Wall clock time and date at job start Tue Mar 31 2020 00:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35723 * 117.00017 * 2 1 4 4 C 1.41840 * 126.78581 * 180.02562 * 3 2 1 5 5 C 1.36685 * 103.81130 * 179.97438 * 4 3 2 6 6 C 1.47504 * 126.87861 * 179.97438 * 5 4 3 7 7 O 1.21616 * 120.00177 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99786 * 180.02562 * 6 5 4 9 9 C 1.40474 * 119.99758 * 180.02562 * 8 6 5 10 10 C 1.40682 * 126.09095 * 359.95700 * 9 8 6 11 11 N 1.30891 * 108.38840 * 179.75386 * 10 9 8 12 12 N 1.40075 * 108.41655 * 0.43841 * 11 10 9 13 13 C 1.37307 * 126.06679 * 179.81735 * 12 11 10 14 14 H 1.08002 * 120.00270 * 179.69743 * 13 12 11 15 15 C 1.38992 * 119.99825 * 359.41624 * 13 12 11 16 16 N 1.31294 * 120.00157 * 0.27648 * 15 13 12 17 17 Si 1.86803 * 119.99838 * 180.27794 * 15 13 12 18 18 H 1.48496 * 109.47187 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47428 * 120.00127 * 17 15 13 20 20 H 1.48498 * 109.47018 * 239.99998 * 17 15 13 21 21 C 1.35716 * 126.08726 * 179.97438 * 9 8 6 22 22 O 1.34662 * 106.23948 * 0.24278 * 5 4 3 23 23 N 1.20874 * 111.62823 * 359.55975 * 22 5 4 24 24 H 1.08993 * 109.46655 * 299.99921 * 1 2 3 25 25 H 1.09003 * 109.46991 * 59.99732 * 1 2 3 26 26 H 1.09002 * 109.46970 * 179.97438 * 1 2 3 27 27 H 1.08000 * 128.09087 * 359.97438 * 4 3 2 28 28 H 0.96997 * 120.00435 * 359.97438 * 8 6 5 29 29 H 1.08000 * 125.80348 * 359.97438 * 10 9 8 30 30 H 0.97005 * 119.99961 * 179.97438 * 16 15 13 31 31 H 1.07991 * 126.25170 * 0.02562 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 3.4430 1.4504 -0.0005 5 6 3.5390 2.8139 -0.0009 6 6 4.7781 3.6140 -0.0009 7 8 5.8603 3.0592 -0.0011 8 7 4.7110 4.9602 -0.0008 9 6 5.8911 5.7222 -0.0014 10 6 7.2039 5.2168 -0.0013 11 7 8.0355 6.2275 -0.0073 12 7 7.2904 7.4136 -0.0013 13 6 7.8002 8.6886 -0.0012 14 1 7.1323 9.5373 -0.0012 15 6 9.1759 8.8869 0.0047 16 7 9.9879 7.8551 0.0047 17 14 9.8695 10.6213 0.0126 18 1 8.7534 11.6008 0.0106 19 1 10.6986 10.8174 1.2288 20 1 10.7079 10.8247 -1.1961 21 6 5.9676 7.0772 -0.0018 22 8 2.2757 3.2803 0.0049 23 7 1.4686 2.3805 -0.0001 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.2441 0.7260 -0.0006 28 1 3.8479 5.4028 -0.0010 29 1 7.4789 4.1723 -0.0004 30 1 10.9481 7.9936 0.0084 31 1 5.1342 7.7639 -0.0013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764033348.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:31 Heat of formation + Delta-G solvation = 88.710192 kcal Electronic energy + Delta-G solvation = -20233.753254 eV Core-core repulsion = 16715.182326 eV Total energy + Delta-G solvation = -3518.570928 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.04532 -40.02635 -39.08824 -38.64660 -34.51341 -33.34843 -33.22665 -31.85980 -30.30604 -28.05182 -27.81240 -25.25891 -23.76698 -23.33647 -21.24576 -20.78486 -19.60156 -18.79250 -18.03443 -17.40473 -16.98815 -16.14471 -15.77083 -15.52042 -15.30456 -15.06364 -14.61795 -14.24295 -13.79931 -13.53938 -13.24171 -12.95640 -12.50706 -12.14830 -11.74232 -11.64975 -11.46930 -11.32583 -11.02075 -10.54003 -10.38118 -9.89342 -9.71661 -9.51059 -9.26258 -8.90601 -8.15033 -6.82082 -6.62187 -4.29679 0.75075 1.97985 2.46183 2.64192 2.86818 3.02870 3.08919 3.09321 3.51610 3.63544 3.82141 3.98686 4.33055 4.63202 4.69520 4.80891 4.84325 4.96458 5.06594 5.13714 5.18527 5.60832 6.17445 6.33531 6.69606 6.72650 6.86459 6.91687 7.14003 7.76210 7.84272 8.04654 8.14645 8.41734 8.65766 9.28991 9.57439 10.33594 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.073369 B = 0.003042 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.539337 B = 9201.776000 C = 9568.157244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.282 6.282 3 C 0.204 3.796 4 C -0.164 4.164 5 C -0.037 4.037 6 C 0.580 3.420 7 O -0.506 6.506 8 N -0.597 5.597 9 C -0.068 4.068 10 C -0.026 4.026 11 N -0.260 5.260 12 N -0.139 5.139 13 C -0.321 4.321 14 H 0.119 0.881 15 C 0.046 3.954 16 N -0.767 5.767 17 Si 0.936 3.064 18 H -0.262 1.262 19 H -0.273 1.273 20 H -0.273 1.273 21 C -0.077 4.077 22 O 0.111 5.889 23 N -0.396 5.396 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.106 0.894 27 H 0.190 0.810 28 H 0.405 0.595 29 H 0.178 0.822 30 H 0.276 0.724 31 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.653 -7.924 0.016 16.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.188 6.188 3 C 0.007 3.993 4 C -0.187 4.187 5 C -0.103 4.103 6 C 0.363 3.637 7 O -0.382 6.382 8 N -0.238 5.238 9 C -0.174 4.174 10 C -0.202 4.202 11 N -0.091 5.091 12 N 0.095 4.905 13 C -0.453 4.453 14 H 0.136 0.864 15 C -0.172 4.172 16 N -0.393 5.393 17 Si 0.760 3.240 18 H -0.186 1.186 19 H -0.199 1.199 20 H -0.199 1.199 21 C -0.229 4.229 22 O 0.047 5.953 23 N -0.121 5.121 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.124 0.876 27 H 0.207 0.793 28 H 0.239 0.761 29 H 0.194 0.806 30 H 0.086 0.914 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.539 -7.903 0.011 15.677 hybrid contribution -0.786 0.269 0.009 0.831 sum -14.325 -7.634 0.020 16.233 Atomic orbital electron populations 1.23084 0.76763 1.04136 1.02423 1.86216 1.22616 1.20538 1.89436 1.21887 0.90709 0.85757 1.00979 1.22130 0.94240 0.95028 1.07326 1.24295 0.86692 0.93980 1.05364 1.16263 0.84858 0.81765 0.80850 1.90790 1.25756 1.70779 1.50889 1.42298 1.08609 1.04373 1.68523 1.17197 0.85536 0.89499 1.25155 1.24142 0.89018 0.99704 1.07352 1.78287 1.17012 0.88023 1.25728 1.44602 1.01830 1.05659 1.38458 1.19972 0.92140 0.80080 1.53132 0.86361 1.25673 0.96061 1.00064 0.95388 1.70220 1.04135 1.30114 1.34834 0.85739 0.79457 0.80291 0.78532 1.18620 1.19860 1.19861 1.21279 0.88592 0.93554 1.19448 1.84935 1.12036 1.29663 1.68709 1.73963 1.16041 0.96667 1.25460 0.92171 0.92178 0.87598 0.79295 0.76061 0.80571 0.91370 0.83320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.73 101.05 1.08 1.32 16 2 O -0.28 -3.19 10.57 -18.87 -0.20 -3.39 16 3 C 0.20 2.62 8.00 -16.72 -0.13 2.49 16 4 C -0.16 -2.15 10.97 -38.77 -0.43 -2.57 16 5 C -0.04 -0.52 7.29 -36.37 -0.26 -0.79 16 6 C 0.58 9.96 7.79 -12.48 -0.10 9.86 16 7 O -0.51 -10.28 14.06 5.26 0.07 -10.21 16 8 N -0.60 -10.29 5.46 -10.95 -0.06 -10.35 16 9 C -0.07 -1.51 6.90 -83.87 -0.58 -2.09 16 10 C -0.03 -0.67 10.85 -17.03 -0.18 -0.85 16 11 N -0.26 -7.33 10.39 30.80 0.32 -7.01 16 12 N -0.14 -3.69 3.74 -11.41 -0.04 -3.73 16 13 C -0.32 -8.23 10.25 -14.82 -0.15 -8.38 16 14 H 0.12 2.70 7.83 -52.49 -0.41 2.29 16 15 C 0.05 1.15 5.50 -17.50 -0.10 1.05 16 16 N -0.77 -20.91 11.81 55.50 0.66 -20.25 16 17 Si 0.94 18.42 29.55 -169.99 -5.02 13.40 16 18 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 19 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 20 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 21 C -0.08 -1.75 11.50 -16.38 -0.19 -1.93 16 22 O 0.11 1.47 11.03 15.50 0.17 1.65 16 23 N -0.40 -5.27 11.50 30.47 0.35 -4.92 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.19 2.18 8.06 -52.49 -0.42 1.75 16 28 H 0.41 5.48 8.65 -40.82 -0.35 5.12 16 29 H 0.18 4.36 5.91 -52.49 -0.31 4.05 16 30 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.15 2.76 8.06 -52.49 -0.42 2.34 16 LS Contribution 290.42 15.07 4.38 4.38 Total: -1.00 -31.79 290.42 -2.74 -34.53 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -2.32 Total: 7.80 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -1.04 Total: -1.89 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 1.22 Total: -46.26 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.05 Total: -11.95 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.02 Total: 13.40 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.79 -2.74 -34.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764033348.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.239 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds