Wall clock time and date at job start Tue Mar 31 2020 00:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35723 * 117.00017 * 2 1 4 4 C 1.41840 * 126.78581 * 180.02562 * 3 2 1 5 5 C 1.36685 * 103.81130 * 179.97438 * 4 3 2 6 6 C 1.47504 * 126.87861 * 179.97438 * 5 4 3 7 7 O 1.21616 * 120.00177 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99786 * 180.02562 * 6 5 4 9 9 C 1.40474 * 119.99758 * 180.02562 * 8 6 5 10 10 C 1.40682 * 126.09095 * 359.95700 * 9 8 6 11 11 N 1.30891 * 108.38840 * 179.75386 * 10 9 8 12 12 N 1.40075 * 108.41655 * 0.43841 * 11 10 9 13 13 C 1.37307 * 126.06679 * 179.81735 * 12 11 10 14 14 H 1.08002 * 120.00270 * 179.69743 * 13 12 11 15 15 C 1.38992 * 119.99825 * 359.41624 * 13 12 11 16 16 N 1.31294 * 120.00157 * 0.27648 * 15 13 12 17 17 Si 1.86803 * 119.99838 * 180.27794 * 15 13 12 18 18 H 1.48496 * 109.47187 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47428 * 120.00127 * 17 15 13 20 20 H 1.48498 * 109.47018 * 239.99998 * 17 15 13 21 21 C 1.35716 * 126.08726 * 179.97438 * 9 8 6 22 22 O 1.34662 * 106.23948 * 0.24278 * 5 4 3 23 23 N 1.20874 * 111.62823 * 359.55975 * 22 5 4 24 24 H 1.08993 * 109.46655 * 299.99921 * 1 2 3 25 25 H 1.09003 * 109.46991 * 59.99732 * 1 2 3 26 26 H 1.09002 * 109.46970 * 179.97438 * 1 2 3 27 27 H 1.08000 * 128.09087 * 359.97438 * 4 3 2 28 28 H 0.96997 * 120.00435 * 359.97438 * 8 6 5 29 29 H 1.08000 * 125.80348 * 359.97438 * 10 9 8 30 30 H 0.97005 * 119.99961 * 179.97438 * 16 15 13 31 31 H 1.07991 * 126.25170 * 0.02562 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 3.4430 1.4504 -0.0005 5 6 3.5390 2.8139 -0.0009 6 6 4.7781 3.6140 -0.0009 7 8 5.8603 3.0592 -0.0011 8 7 4.7110 4.9602 -0.0008 9 6 5.8911 5.7222 -0.0014 10 6 7.2039 5.2168 -0.0013 11 7 8.0355 6.2275 -0.0073 12 7 7.2904 7.4136 -0.0013 13 6 7.8002 8.6886 -0.0012 14 1 7.1323 9.5373 -0.0012 15 6 9.1759 8.8869 0.0047 16 7 9.9879 7.8551 0.0047 17 14 9.8695 10.6213 0.0126 18 1 8.7534 11.6008 0.0106 19 1 10.6986 10.8174 1.2288 20 1 10.7079 10.8247 -1.1961 21 6 5.9676 7.0772 -0.0018 22 8 2.2757 3.2803 0.0049 23 7 1.4686 2.3805 -0.0001 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.2441 0.7260 -0.0006 28 1 3.8479 5.4028 -0.0010 29 1 7.4789 4.1723 -0.0004 30 1 10.9481 7.9936 0.0084 31 1 5.1342 7.7639 -0.0013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764033348.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:30 Heat of formation + Delta-G solvation = 64.017065 kcal Electronic energy + Delta-G solvation = -20234.824029 eV Core-core repulsion = 16715.182326 eV Total energy + Delta-G solvation = -3519.641702 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -46.10421 -41.76173 -40.28663 -39.92985 -36.11876 -35.07202 -34.32978 -33.03844 -32.19153 -29.72498 -28.59190 -27.02273 -25.11481 -24.42662 -22.91500 -22.11847 -21.31584 -20.19329 -19.11687 -19.08296 -17.94769 -17.51614 -17.25766 -16.83055 -16.61367 -16.14059 -16.10123 -15.67504 -15.16484 -15.07582 -14.91107 -14.57683 -13.47991 -13.34796 -13.15565 -12.93312 -12.89779 -12.86847 -12.53905 -12.00864 -11.99160 -11.26172 -11.08318 -10.99238 -10.81686 -10.46507 -10.10639 -8.58831 -8.46063 -6.23478 -0.40864 0.93736 1.27822 1.38038 1.44216 1.57188 1.61950 1.63907 1.91997 2.09263 2.32759 2.51911 2.87855 3.02551 3.10809 3.64340 3.85084 3.99811 4.26565 4.29899 4.45136 4.56582 4.60823 4.65724 5.00551 5.03122 5.24963 5.32934 5.83308 5.95793 6.25842 6.46221 6.71882 6.89551 7.08255 7.45427 7.66719 8.53308 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.073369 B = 0.003042 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.539337 B = 9201.776000 C = 9568.157244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.289 6.289 3 C 0.205 3.795 4 C -0.153 4.153 5 C -0.043 4.043 6 C 0.591 3.409 7 O -0.538 6.538 8 N -0.591 5.591 9 C -0.052 4.052 10 C -0.051 4.051 11 N -0.309 5.309 12 N -0.166 5.166 13 C -0.351 4.351 14 H 0.143 0.857 15 C -0.006 4.006 16 N -0.823 5.823 17 Si 1.018 2.982 18 H -0.240 1.240 19 H -0.274 1.274 20 H -0.274 1.274 21 C -0.071 4.071 22 O 0.118 5.882 23 N -0.397 5.397 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.137 0.863 27 H 0.203 0.797 28 H 0.425 0.575 29 H 0.174 0.826 30 H 0.277 0.723 31 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.092 -7.492 0.021 18.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.195 6.195 3 C 0.008 3.992 4 C -0.176 4.176 5 C -0.110 4.110 6 C 0.375 3.625 7 O -0.416 6.416 8 N -0.234 5.234 9 C -0.158 4.158 10 C -0.226 4.226 11 N -0.141 5.141 12 N 0.066 4.934 13 C -0.482 4.482 14 H 0.160 0.840 15 C -0.218 4.218 16 N -0.451 5.451 17 Si 0.838 3.162 18 H -0.163 1.163 19 H -0.199 1.199 20 H -0.199 1.199 21 C -0.221 4.221 22 O 0.052 5.948 23 N -0.122 5.122 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.155 0.845 27 H 0.220 0.780 28 H 0.263 0.737 29 H 0.190 0.810 30 H 0.086 0.914 31 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -16.055 -7.487 0.017 17.715 hybrid contribution -0.275 -0.093 0.006 0.290 sum -16.330 -7.580 0.023 18.003 Atomic orbital electron populations 1.23410 0.74731 1.06376 1.02598 1.86236 1.24609 1.19582 1.89096 1.21950 0.90651 0.86169 1.00434 1.22375 0.94976 0.94811 1.05463 1.23584 0.86171 0.93768 1.07440 1.16492 0.85396 0.81592 0.79040 1.90782 1.27559 1.71479 1.51803 1.42160 1.08051 1.04340 1.68891 1.17206 0.86025 0.89741 1.22872 1.24245 0.90612 0.99287 1.08473 1.78181 1.19132 0.89384 1.27395 1.44874 1.02986 1.05552 1.40025 1.20679 0.93239 0.80552 1.53735 0.83966 1.26868 0.96163 1.04629 0.94150 1.70392 1.04463 1.33026 1.37171 0.84540 0.78856 0.74729 0.78124 1.16304 1.19878 1.19881 1.22028 0.88501 0.94449 1.17158 1.84942 1.11437 1.29619 1.68778 1.73950 1.15876 0.96953 1.25448 0.91968 0.91977 0.84459 0.78016 0.73658 0.80970 0.91350 0.79111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.73 113.37 1.22 1.50 16 2 O -0.29 -5.83 10.57 -90.45 -0.96 -6.78 16 3 C 0.21 4.81 8.00 85.77 0.69 5.49 16 4 C -0.15 -3.72 10.97 22.80 0.25 -3.47 16 5 C -0.04 -1.15 7.29 24.35 0.18 -0.97 16 6 C 0.59 19.71 7.79 86.69 0.68 20.38 16 7 O -0.54 -21.93 14.06 -4.08 -0.06 -21.99 16 8 N -0.59 -19.51 5.46 -306.81 -1.67 -21.18 16 9 C -0.05 -2.29 6.90 37.77 0.26 -2.03 16 10 C -0.05 -2.64 10.85 85.43 0.93 -1.71 16 11 N -0.31 -18.10 10.39 -56.45 -0.59 -18.68 16 12 N -0.17 -8.93 3.74 -190.00 -0.71 -9.64 16 13 C -0.35 -18.02 10.25 84.02 0.86 -17.16 16 14 H 0.14 6.29 7.83 -2.91 -0.02 6.27 16 15 C -0.01 -0.32 5.50 84.95 0.47 0.15 16 16 N -0.82 -46.55 11.81 21.66 0.26 -46.29 16 17 Si 1.02 37.70 29.55 68.60 2.03 39.73 16 18 H -0.24 -7.93 7.11 99.48 0.71 -7.22 16 19 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 20 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 21 C -0.07 -3.11 11.50 83.38 0.96 -2.15 16 22 O 0.12 2.86 11.03 65.64 0.72 3.59 16 23 N -0.40 -9.65 11.50 -172.00 -1.98 -11.63 16 24 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.20 4.28 8.06 -2.91 -0.02 4.26 16 28 H 0.43 10.47 8.65 -92.71 -0.80 9.67 16 29 H 0.17 8.91 5.91 -2.91 -0.02 8.89 16 30 H 0.28 14.37 8.31 -92.70 -0.77 13.60 16 31 H 0.19 6.50 8.06 -2.91 -0.02 6.48 16 Total: -1.00 -71.09 290.42 3.93 -67.16 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: 0.40 Total: 25.67 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 6.48 Total: 0.05 kcal Atomic # 7 Polarization: -102.73 SS G_CDS: -4.69 Total: -107.42 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.29 Total: -25.18 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.03 Total: 39.73 kcal Total: -71.09 3.93 -67.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764033348.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.178 kcal (2) G-P(sol) polarization free energy of solvation -71.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds