Wall clock time and date at job start Tue Mar 31 2020 00:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80998 * 1 3 3 C 1.76202 * 99.99848 * 2 1 4 4 C 1.35245 * 119.99559 * 180.02562 * 3 2 1 5 5 C 1.41016 * 120.00449 * 359.97438 * 4 3 2 6 6 O 1.21738 * 120.00052 * 359.97438 * 5 4 3 7 7 O 1.34998 * 119.99920 * 180.02562 * 5 4 3 8 8 C 1.42906 * 116.99986 * 180.02562 * 7 5 4 9 9 C 1.50696 * 109.47128 * 179.97438 * 8 7 5 10 10 C 1.38639 * 119.74723 * 90.00010 * 9 8 7 11 11 C 1.37622 * 120.24860 * 180.27284 * 10 9 8 12 12 C 1.40715 * 119.74171 * 359.52374 * 11 10 9 13 13 C 1.41399 * 120.24183 * 180.22515 * 12 11 10 14 14 H 1.07996 * 120.00044 * 204.52621 * 13 12 11 15 15 C 1.39950 * 119.99773 * 24.53568 * 13 12 11 16 16 N 1.30821 * 119.99991 * 17.71280 * 15 13 12 17 17 Si 1.86800 * 119.99756 * 197.70913 * 15 13 12 18 18 H 1.48502 * 109.46794 * 89.99841 * 17 15 13 19 19 H 1.48499 * 109.47177 * 209.99507 * 17 15 13 20 20 H 1.48492 * 109.47228 * 330.00168 * 17 15 13 21 21 C 1.40715 * 119.51175 * 0.47555 * 12 11 10 22 22 C 1.37615 * 119.74353 * 359.75047 * 21 12 11 23 23 H 1.09001 * 109.47356 * 60.00343 * 1 2 3 24 24 H 1.09008 * 109.46964 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47360 * 299.99729 * 1 2 3 26 26 H 1.07991 * 119.99886 * 0.02562 * 3 2 1 27 27 H 1.08004 * 119.99531 * 180.02562 * 4 3 2 28 28 H 1.09001 * 109.47143 * 59.99479 * 8 7 5 29 29 H 1.09000 * 109.46665 * 299.99710 * 8 7 5 30 30 H 1.08000 * 119.87572 * 359.97438 * 10 9 8 31 31 H 1.08002 * 120.12750 * 179.72105 * 11 10 9 32 32 H 0.97005 * 119.99803 * 180.02562 * 16 15 13 33 33 H 1.08000 * 120.12426 * 179.73134 * 21 12 11 34 34 H 1.08002 * 119.87199 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 6 3.3868 2.1978 -0.0005 5 6 4.4671 1.2914 -0.0005 6 8 4.2557 0.0925 0.0004 7 8 5.7356 1.7531 -0.0005 8 6 6.7808 0.7786 -0.0011 9 6 8.1171 1.4751 -0.0016 10 6 8.7277 1.7930 1.2018 11 6 9.9454 2.4341 1.2134 12 6 10.5753 2.7580 -0.0025 13 6 11.8288 3.4124 -0.0030 14 1 12.1290 4.0036 -0.8554 15 6 12.6804 3.2938 1.1012 16 7 12.4982 2.3304 1.9673 17 14 14.0773 4.5112 1.3383 18 1 13.5987 5.6627 2.1446 19 1 15.2002 3.8445 2.0453 20 1 14.5432 4.9941 0.0136 21 6 9.9463 2.4305 -1.2179 22 6 8.7264 1.7936 -1.2054 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.2886 2.4294 0.0004 27 1 3.5743 3.2614 -0.0001 28 1 6.6959 0.1553 -0.8913 29 1 6.6962 0.1547 0.8887 30 1 8.2436 1.5408 2.1337 31 1 10.4171 2.6848 2.1520 32 1 13.0883 2.2485 2.7329 33 1 10.4189 2.6784 -2.1568 34 1 8.2419 1.5410 -2.1370 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776107482.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:47 Heat of formation + Delta-G solvation = -51.144162 kcal Electronic energy + Delta-G solvation = -17882.333930 eV Core-core repulsion = 14871.698926 eV Total energy + Delta-G solvation = -3010.635005 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.076 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.22359 -37.70868 -36.26672 -33.82607 -33.20029 -30.72753 -29.33463 -29.26641 -27.34485 -24.91321 -23.24999 -21.05106 -20.14766 -20.01895 -18.15329 -17.35711 -16.76915 -16.00437 -15.43523 -15.24063 -14.78886 -14.25074 -13.97471 -13.87996 -13.66681 -13.47851 -12.80646 -12.47608 -12.42847 -11.99576 -11.92940 -11.50753 -11.31265 -11.17354 -11.05415 -10.73816 -10.56826 -10.51019 -10.04500 -9.69325 -9.45890 -9.40970 -9.19164 -7.79687 -7.52450 -7.41951 -6.83751 -4.43116 0.76809 1.43054 2.22244 2.55997 3.02715 3.03338 3.06764 3.07692 3.12997 3.59963 3.88134 4.55126 4.80678 4.83072 4.85307 5.34451 5.43758 5.63120 5.67355 5.73980 5.75615 5.82919 6.18753 6.30279 6.35824 6.89312 6.93838 7.01028 7.22191 7.30328 7.55393 7.77835 7.99372 8.05078 8.12555 8.22835 8.57441 8.82094 8.90451 10.10473 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.058389 B = 0.002783 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.424879 B =10057.627411 C =10097.483405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 S 0.024 5.976 3 C -0.095 4.095 4 C -0.192 4.192 5 C 0.480 3.520 6 O -0.500 6.500 7 O -0.340 6.340 8 C 0.134 3.866 9 C -0.232 4.232 10 C -0.076 4.076 11 C -0.170 4.170 12 C 0.118 3.882 13 C -0.458 4.458 14 H 0.080 0.920 15 C 0.075 3.925 16 N -0.787 5.787 17 Si 0.911 3.089 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.261 1.261 21 C -0.230 4.230 22 C -0.065 4.065 23 H 0.078 0.922 24 H 0.101 0.899 25 H 0.078 0.922 26 H 0.149 0.851 27 H 0.151 0.849 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.282 0.718 33 H 0.094 0.906 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.101 -0.573 -1.294 17.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.387 4.387 2 S 0.269 5.731 3 C -0.229 4.229 4 C -0.227 4.227 5 C 0.327 3.673 6 O -0.395 6.395 7 O -0.256 6.256 8 C 0.062 3.938 9 C -0.234 4.234 10 C -0.095 4.095 11 C -0.190 4.190 12 C 0.115 3.885 13 C -0.487 4.487 14 H 0.098 0.902 15 C -0.144 4.144 16 N -0.412 5.412 17 Si 0.735 3.265 18 H -0.192 1.192 19 H -0.202 1.202 20 H -0.185 1.185 21 C -0.250 4.250 22 C -0.083 4.083 23 H 0.097 0.903 24 H 0.120 0.880 25 H 0.097 0.903 26 H 0.167 0.833 27 H 0.169 0.831 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.137 0.863 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.414 -2.087 -1.081 16.582 hybrid contribution -0.227 1.599 0.189 1.626 sum -16.641 -0.489 -0.892 16.672 Atomic orbital electron populations 1.24224 1.02556 1.06817 1.05116 1.87679 0.99011 1.00697 1.85683 1.26222 0.99857 1.00326 0.96533 1.20866 0.89866 1.01107 1.10822 1.19923 0.84664 0.87836 0.74837 1.90693 1.84118 1.17599 1.47079 1.86423 1.14318 1.41861 1.83000 1.21302 0.82990 0.88730 1.00811 1.18687 0.95315 1.15270 0.94108 1.20544 0.95653 0.98159 0.95117 1.21302 0.94587 1.04249 0.98814 1.17687 0.91868 0.87988 0.90942 1.19671 1.00265 1.26811 1.01904 0.90194 1.25969 0.98978 0.94642 0.94775 1.69828 1.35327 1.25404 1.10642 0.86272 0.79766 0.80882 0.79602 1.19166 1.20248 1.18533 1.20950 0.98104 1.08814 0.97120 1.20382 0.95186 0.97528 0.95209 0.90277 0.88013 0.90276 0.83304 0.83129 0.92373 0.92283 0.89322 0.86264 0.90680 0.88739 0.89309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.52 10.48 101.05 1.06 -0.46 16 2 S 0.02 0.28 19.25 -107.50 -2.07 -1.79 16 3 C -0.09 -0.95 10.09 29.67 0.30 -0.66 16 4 C -0.19 -2.38 9.97 -39.60 -0.39 -2.78 16 5 C 0.48 7.93 7.66 31.78 0.24 8.18 16 6 O -0.50 -8.99 13.11 -19.45 -0.25 -9.25 16 7 O -0.34 -6.42 10.09 -41.31 -0.42 -6.83 16 8 C 0.13 2.65 5.49 36.00 0.20 2.85 16 9 C -0.23 -5.26 5.53 -104.33 -0.58 -5.84 16 10 C -0.08 -1.81 9.67 -39.66 -0.38 -2.19 16 11 C -0.17 -4.43 8.70 -38.87 -0.34 -4.77 16 12 C 0.12 3.13 5.57 -106.82 -0.60 2.54 16 13 C -0.46 -11.99 9.06 -37.74 -0.34 -12.33 16 14 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 15 C 0.08 1.86 5.14 -17.34 -0.09 1.77 16 16 N -0.79 -20.08 10.95 55.55 0.61 -19.47 16 17 Si 0.91 18.33 29.59 -169.99 -5.03 13.30 16 18 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 19 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 20 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 21 C -0.23 -5.67 9.80 -38.87 -0.38 -6.05 16 22 C -0.06 -1.48 9.67 -39.67 -0.38 -1.86 16 23 H 0.08 0.47 8.14 -51.92 -0.42 0.04 16 24 H 0.10 0.63 8.14 -51.91 -0.42 0.21 16 25 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 26 H 0.15 0.95 8.03 -52.49 -0.42 0.53 16 27 H 0.15 1.55 8.06 -52.48 -0.42 1.12 16 28 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 29 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 30 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 31 H 0.12 3.17 6.16 -52.49 -0.32 2.85 16 32 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 33 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 34 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 314.32 15.07 4.74 4.74 Total: -1.00 -28.89 314.32 -8.20 -37.09 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -4.09 Total: 3.82 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -1.68 Total: -21.61 kcal Atomic # 7 Polarization: -20.08 SS G_CDS: 0.61 Total: -19.47 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.67 Total: -16.08 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Atomic # 16 Polarization: 0.28 SS G_CDS: -2.07 Total: -1.79 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.89 -8.20 -37.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776107482.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.055 kcal (2) G-P(sol) polarization free energy of solvation -28.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds