Wall clock time and date at job start Tue Mar 31 2020 00:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80998 * 1 3 3 C 1.76202 * 99.99848 * 2 1 4 4 C 1.35245 * 119.99559 * 180.02562 * 3 2 1 5 5 C 1.41016 * 120.00449 * 359.97438 * 4 3 2 6 6 O 1.21738 * 120.00052 * 359.97438 * 5 4 3 7 7 O 1.34998 * 119.99920 * 180.02562 * 5 4 3 8 8 C 1.42906 * 116.99986 * 180.02562 * 7 5 4 9 9 C 1.50696 * 109.47128 * 179.97438 * 8 7 5 10 10 C 1.38639 * 119.74723 * 90.00010 * 9 8 7 11 11 C 1.37622 * 120.24860 * 180.27284 * 10 9 8 12 12 C 1.40715 * 119.74171 * 359.52374 * 11 10 9 13 13 C 1.41399 * 120.24183 * 180.22515 * 12 11 10 14 14 H 1.07996 * 120.00044 * 204.52621 * 13 12 11 15 15 C 1.39950 * 119.99773 * 24.53568 * 13 12 11 16 16 N 1.30821 * 119.99991 * 17.71280 * 15 13 12 17 17 Si 1.86800 * 119.99756 * 197.70913 * 15 13 12 18 18 H 1.48502 * 109.46794 * 89.99841 * 17 15 13 19 19 H 1.48499 * 109.47177 * 209.99507 * 17 15 13 20 20 H 1.48492 * 109.47228 * 330.00168 * 17 15 13 21 21 C 1.40715 * 119.51175 * 0.47555 * 12 11 10 22 22 C 1.37615 * 119.74353 * 359.75047 * 21 12 11 23 23 H 1.09001 * 109.47356 * 60.00343 * 1 2 3 24 24 H 1.09008 * 109.46964 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47360 * 299.99729 * 1 2 3 26 26 H 1.07991 * 119.99886 * 0.02562 * 3 2 1 27 27 H 1.08004 * 119.99531 * 180.02562 * 4 3 2 28 28 H 1.09001 * 109.47143 * 59.99479 * 8 7 5 29 29 H 1.09000 * 109.46665 * 299.99710 * 8 7 5 30 30 H 1.08000 * 119.87572 * 359.97438 * 10 9 8 31 31 H 1.08002 * 120.12750 * 179.72105 * 11 10 9 32 32 H 0.97005 * 119.99803 * 180.02562 * 16 15 13 33 33 H 1.08000 * 120.12426 * 179.73134 * 21 12 11 34 34 H 1.08002 * 119.87199 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 6 3.3868 2.1978 -0.0005 5 6 4.4671 1.2914 -0.0005 6 8 4.2557 0.0925 0.0004 7 8 5.7356 1.7531 -0.0005 8 6 6.7808 0.7786 -0.0011 9 6 8.1171 1.4751 -0.0016 10 6 8.7277 1.7930 1.2018 11 6 9.9454 2.4341 1.2134 12 6 10.5753 2.7580 -0.0025 13 6 11.8288 3.4124 -0.0030 14 1 12.1290 4.0036 -0.8554 15 6 12.6804 3.2938 1.1012 16 7 12.4982 2.3304 1.9673 17 14 14.0773 4.5112 1.3383 18 1 13.5987 5.6627 2.1446 19 1 15.2002 3.8445 2.0453 20 1 14.5432 4.9941 0.0136 21 6 9.9463 2.4305 -1.2179 22 6 8.7264 1.7936 -1.2054 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.2886 2.4294 0.0004 27 1 3.5743 3.2614 -0.0001 28 1 6.6959 0.1553 -0.8913 29 1 6.6962 0.1547 0.8887 30 1 8.2436 1.5408 2.1337 31 1 10.4171 2.6848 2.1520 32 1 13.0883 2.2485 2.7329 33 1 10.4189 2.6784 -2.1568 34 1 8.2419 1.5410 -2.1370 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776107482.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:44 Heat of formation + Delta-G solvation = -65.276500 kcal Electronic energy + Delta-G solvation = -17882.946754 eV Core-core repulsion = 14871.698926 eV Total energy + Delta-G solvation = -3011.247829 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.076 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.52911 -39.50944 -37.69625 -35.66603 -34.17304 -32.52848 -31.22959 -29.86124 -29.04438 -26.33315 -24.74509 -22.95148 -21.85674 -21.25975 -19.30198 -19.24876 -18.04010 -17.44613 -17.11884 -16.41875 -16.01316 -15.70578 -15.46772 -15.20440 -14.58049 -14.48161 -14.21621 -13.96540 -13.88642 -13.83810 -13.27416 -13.03976 -12.81255 -12.74501 -12.39262 -12.29033 -12.05657 -11.64757 -11.56730 -11.47463 -11.27102 -11.04169 -10.42199 -9.43647 -9.33500 -8.70642 -8.68465 -6.39216 -0.18559 0.62608 0.76955 1.10946 1.38869 1.45491 1.52852 1.54242 1.99117 2.19232 2.22467 2.75990 3.69748 3.93920 4.12855 4.13615 4.34986 4.36212 4.36370 4.48754 4.54359 4.56962 4.77361 4.95554 4.96881 5.00442 5.12444 5.30609 5.39795 5.60287 5.65398 5.89256 6.05840 6.15175 6.31992 6.64451 6.84680 6.88883 6.97539 8.28683 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.058389 B = 0.002783 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.424879 B =10057.627411 C =10097.483405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 S -0.049 6.049 3 C -0.054 4.054 4 C -0.223 4.223 5 C 0.473 3.527 6 O -0.524 6.524 7 O -0.355 6.355 8 C 0.143 3.857 9 C -0.228 4.228 10 C -0.082 4.082 11 C -0.193 4.193 12 C 0.087 3.913 13 C -0.493 4.493 14 H 0.080 0.920 15 C 0.034 3.966 16 N -0.820 5.820 17 Si 0.986 3.014 18 H -0.261 1.261 19 H -0.267 1.267 20 H -0.257 1.257 21 C -0.245 4.245 22 C -0.066 4.066 23 H 0.096 0.904 24 H 0.109 0.891 25 H 0.095 0.905 26 H 0.195 0.805 27 H 0.171 0.829 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.290 0.710 33 H 0.104 0.896 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.233 0.132 -1.542 19.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.365 4.365 2 S 0.197 5.803 3 C -0.189 4.189 4 C -0.257 4.257 5 C 0.323 3.677 6 O -0.420 6.420 7 O -0.272 6.272 8 C 0.070 3.930 9 C -0.229 4.229 10 C -0.100 4.100 11 C -0.212 4.212 12 C 0.084 3.916 13 C -0.522 4.522 14 H 0.098 0.902 15 C -0.182 4.182 16 N -0.445 5.445 17 Si 0.807 3.193 18 H -0.186 1.186 19 H -0.192 1.192 20 H -0.180 1.180 21 C -0.264 4.264 22 C -0.085 4.085 23 H 0.115 0.885 24 H 0.128 0.872 25 H 0.114 0.886 26 H 0.212 0.788 27 H 0.189 0.811 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.101 0.899 33 H 0.122 0.878 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -18.573 -1.395 -1.335 18.673 hybrid contribution 0.118 1.242 0.242 1.271 sum -18.455 -0.153 -1.093 18.488 Atomic orbital electron populations 1.24187 0.97568 1.07973 1.06802 1.87984 1.04276 1.03000 1.85022 1.26609 1.00229 0.99695 0.92334 1.20925 0.89276 1.01372 1.14097 1.20597 0.84314 0.88432 0.74397 1.90720 1.84361 1.18565 1.48312 1.86373 1.15352 1.41640 1.83860 1.21048 0.82187 0.88508 1.01299 1.19012 0.96557 1.13796 0.93582 1.20769 0.95080 0.97645 0.96520 1.21276 0.95688 1.06029 0.98255 1.18050 0.92737 0.88955 0.91831 1.19922 1.01011 1.28113 1.03157 0.90191 1.26850 1.01410 0.96031 0.93890 1.69876 1.36670 1.26727 1.11248 0.85140 0.76379 0.78171 0.79654 1.18601 1.19171 1.18037 1.21169 0.98950 1.09320 0.96974 1.20691 0.94601 0.96605 0.96564 0.88540 0.87202 0.88600 0.78840 0.81143 0.91613 0.92150 0.87723 0.87735 0.89883 0.87827 0.86528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.01 10.48 113.37 1.19 -0.82 16 2 S -0.05 -1.01 19.25 -56.49 -1.09 -2.10 16 3 C -0.05 -0.92 10.09 67.13 0.68 -0.24 16 4 C -0.22 -5.09 9.97 22.26 0.22 -4.87 16 5 C 0.47 15.32 7.66 68.50 0.52 15.85 16 6 O -0.52 -18.71 13.11 19.06 0.25 -18.46 16 7 O -0.36 -13.25 10.09 -59.17 -0.60 -13.84 16 8 C 0.14 5.58 5.49 71.23 0.39 5.97 16 9 C -0.23 -10.33 5.53 -19.68 -0.11 -10.43 16 10 C -0.08 -3.96 9.67 22.22 0.21 -3.74 16 11 C -0.19 -10.41 8.70 22.73 0.20 -10.21 16 12 C 0.09 4.77 5.57 -21.29 -0.12 4.65 16 13 C -0.49 -26.65 9.06 23.46 0.21 -26.44 16 14 H 0.08 4.14 7.91 -2.91 -0.02 4.12 16 15 C 0.03 1.71 5.14 85.26 0.44 2.15 16 16 N -0.82 -42.90 10.95 21.83 0.24 -42.67 16 17 Si 0.99 37.84 29.59 68.60 2.03 39.87 16 18 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 19 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 20 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 21 C -0.24 -12.25 9.80 22.73 0.22 -12.03 16 22 C -0.07 -3.02 9.67 22.21 0.21 -2.81 16 23 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.10 0.71 8.14 -2.40 -0.02 0.69 16 26 H 0.19 1.46 8.03 -2.92 -0.02 1.44 16 27 H 0.17 3.11 8.06 -2.91 -0.02 3.08 16 28 H 0.07 2.44 8.07 -2.39 -0.02 2.42 16 29 H 0.06 2.31 8.07 -2.39 -0.02 2.29 16 30 H 0.10 4.60 8.06 -2.91 -0.02 4.57 16 31 H 0.10 5.84 6.16 -2.91 -0.02 5.82 16 32 H 0.29 13.65 8.30 -92.70 -0.77 12.88 16 33 H 0.10 4.84 8.06 -2.91 -0.02 4.82 16 34 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -64.92 314.32 6.21 -58.72 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 1.10 Total: 21.48 kcal Atomic # 6 Polarization: -47.27 SS G_CDS: 4.28 Total: -42.99 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.24 Total: -42.67 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.35 Total: -32.30 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 2.03 Total: 39.87 kcal Atomic # 16 Polarization: -1.01 SS G_CDS: -1.09 Total: -2.10 kcal Total: -64.92 6.21 -58.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776107482.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.560 kcal (2) G-P(sol) polarization free energy of solvation -64.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds