Wall clock time and date at job start Tue Mar 31 2020 00:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81002 * 1 3 3 C 1.76211 * 99.99649 * 2 1 4 4 C 1.35240 * 119.99903 * 180.02562 * 3 2 1 5 5 C 1.41023 * 120.00136 * 180.02562 * 4 3 2 6 6 O 1.21737 * 119.99670 * 359.97438 * 5 4 3 7 7 O 1.34998 * 120.00116 * 179.97438 * 5 4 3 8 8 C 1.42894 * 116.99733 * 179.97438 * 7 5 4 9 9 C 1.50698 * 109.47160 * 179.97438 * 8 7 5 10 10 C 1.38633 * 119.75378 * 269.73125 * 9 8 7 11 11 C 1.37619 * 120.25426 * 179.72134 * 10 9 8 12 12 C 1.40714 * 119.74254 * 0.56485 * 11 10 9 13 13 C 1.41391 * 120.24593 * 179.68631 * 12 11 10 14 14 H 1.07999 * 120.00030 * 155.31324 * 13 12 11 15 15 C 1.39951 * 119.99695 * 335.30716 * 13 12 11 16 16 N 1.30814 * 120.00076 * 342.23501 * 15 13 12 17 17 Si 1.86796 * 119.99703 * 162.23400 * 15 13 12 18 18 H 1.48500 * 109.47276 * 94.66742 * 17 15 13 19 19 H 1.48503 * 109.47280 * 214.66677 * 17 15 13 20 20 H 1.48503 * 109.47294 * 334.66556 * 17 15 13 21 21 C 1.40719 * 119.51236 * 359.70495 * 12 11 10 22 22 C 1.37622 * 119.74453 * 0.02562 * 21 12 11 23 23 H 1.09007 * 109.46585 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46973 * 299.99543 * 1 2 3 25 25 H 1.09000 * 109.47145 * 60.00129 * 1 2 3 26 26 H 1.07994 * 119.99777 * 359.97438 * 3 2 1 27 27 H 1.08009 * 120.00282 * 359.72218 * 4 3 2 28 28 H 1.09003 * 109.47084 * 299.99691 * 8 7 5 29 29 H 1.08999 * 109.47663 * 59.99858 * 8 7 5 30 30 H 1.08009 * 119.87121 * 359.97089 * 10 9 8 31 31 H 1.07997 * 120.12994 * 180.27128 * 11 10 9 32 32 H 0.96999 * 119.99924 * 179.97438 * 16 15 13 33 33 H 1.07995 * 120.12788 * 179.97438 * 21 12 11 34 34 H 1.07996 * 119.88006 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7354 0.0000 4 6 3.3867 2.1980 -0.0005 5 6 3.6316 3.5868 0.0000 6 8 2.6990 4.3692 0.0005 7 8 4.9001 4.0485 0.0000 8 6 5.0742 5.4668 0.0000 9 6 6.5455 5.7924 0.0007 10 6 7.2155 5.9466 1.2045 11 6 8.5604 6.2383 1.2171 12 6 9.2529 6.3918 0.0018 13 6 10.6332 6.6981 0.0024 14 1 11.2454 6.4337 -0.8471 15 6 11.2061 7.3440 1.1038 16 7 10.4448 7.9701 1.9638 17 14 13.0581 7.3121 1.3459 18 1 13.6556 8.5372 0.7564 19 1 13.3668 7.2600 2.7975 20 1 13.6243 6.1137 0.6761 21 6 8.5614 6.2386 -1.2141 22 6 7.2177 5.9414 -1.2028 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.2886 2.4294 -0.0004 27 1 4.2142 1.5038 0.0036 28 1 4.6084 5.8901 -0.8900 29 1 4.6084 5.8901 0.8899 30 1 6.6808 5.8334 2.1361 31 1 9.0813 6.3537 2.1561 32 1 10.8418 8.4175 2.7274 33 1 9.0830 6.3546 -2.1527 34 1 6.6848 5.8237 -2.1347 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776107483.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:49 Heat of formation + Delta-G solvation = -56.711356 kcal Electronic energy + Delta-G solvation = -17680.582291 eV Core-core repulsion = 14669.705875 eV Total energy + Delta-G solvation = -3010.876416 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.076 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.21999 -37.70921 -36.26068 -33.83668 -33.25713 -30.74879 -29.58736 -29.34059 -27.38109 -25.02264 -23.31171 -21.06202 -20.08856 -20.01016 -18.06268 -17.36615 -16.58050 -16.38250 -16.01772 -15.32468 -14.57478 -14.38315 -14.17138 -13.88082 -13.72265 -13.23899 -12.93182 -12.61501 -12.45627 -12.24926 -11.99895 -11.52531 -11.24061 -11.10321 -10.95359 -10.77906 -10.64551 -10.59271 -10.29661 -10.06386 -9.66138 -9.44185 -9.18990 -8.00265 -7.53294 -7.42751 -6.84648 -4.43619 0.69829 1.07706 1.84361 2.55051 3.01422 3.02903 3.04695 3.10521 3.10627 3.64112 3.87814 4.56852 4.60723 4.61449 4.75339 5.20404 5.29341 5.58461 5.65643 5.71571 5.73434 5.85608 6.16012 6.28962 6.34600 6.86514 6.90871 7.00125 7.21088 7.29244 7.54586 7.76710 7.98535 8.03805 8.09666 8.22003 8.56536 8.81303 8.89616 10.09649 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.040703 B = 0.002674 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.747364 B =10467.557280 C =10669.374551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 S -0.088 6.088 3 C -0.076 4.076 4 C -0.175 4.175 5 C 0.499 3.501 6 O -0.529 6.529 7 O -0.339 6.339 8 C 0.134 3.866 9 C -0.234 4.234 10 C -0.076 4.076 11 C -0.170 4.170 12 C 0.118 3.882 13 C -0.457 4.457 14 H 0.080 0.920 15 C 0.075 3.925 16 N -0.787 5.787 17 Si 0.909 3.091 18 H -0.270 1.270 19 H -0.274 1.274 20 H -0.259 1.259 21 C -0.230 4.230 22 C -0.064 4.064 23 H 0.109 0.891 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.148 0.852 27 H 0.144 0.856 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.282 0.718 33 H 0.095 0.905 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.598 -11.734 -1.286 18.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 S 0.155 5.845 3 C -0.210 4.210 4 C -0.207 4.207 5 C 0.345 3.655 6 O -0.423 6.423 7 O -0.255 6.255 8 C 0.061 3.939 9 C -0.235 4.235 10 C -0.094 4.094 11 C -0.190 4.190 12 C 0.116 3.884 13 C -0.486 4.486 14 H 0.098 0.902 15 C -0.144 4.144 16 N -0.412 5.412 17 Si 0.733 3.267 18 H -0.195 1.195 19 H -0.199 1.199 20 H -0.183 1.183 21 C -0.250 4.250 22 C -0.083 4.083 23 H 0.127 0.873 24 H 0.107 0.893 25 H 0.107 0.893 26 H 0.165 0.835 27 H 0.161 0.839 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.137 0.863 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.205 -12.357 -1.069 18.117 hybrid contribution -0.105 1.360 0.191 1.377 sum -13.310 -10.998 -0.877 17.288 Atomic orbital electron populations 1.23735 0.94695 1.07512 1.06398 1.85993 1.06737 1.02131 1.89645 1.25910 1.00717 0.98493 0.95834 1.20839 0.97263 0.93904 1.08667 1.19651 0.82094 0.89923 0.73853 1.90855 1.44748 1.59382 1.47276 1.86431 1.27790 1.28650 1.82650 1.21325 0.95732 0.75962 1.00835 1.18674 0.92687 1.17987 0.94143 1.20539 0.94919 0.98889 0.95095 1.21292 0.93134 1.05719 0.98806 1.17686 0.92972 0.86849 0.90940 1.19659 0.93910 1.32874 1.02146 0.90191 1.25968 1.00878 0.92777 0.94732 1.69822 1.37950 1.22477 1.10918 0.86283 0.82140 0.79782 0.78469 1.19493 1.19942 1.18307 1.20954 0.93672 1.13206 0.97135 1.20389 0.94469 0.98224 0.95198 0.87274 0.89315 0.89314 0.83454 0.83860 0.92331 0.92253 0.89312 0.86277 0.90681 0.88710 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 10.48 101.05 1.06 0.29 16 2 S -0.09 -0.73 22.69 -107.50 -2.44 -3.17 16 3 C -0.08 -0.81 9.53 29.66 0.28 -0.53 16 4 C -0.17 -2.27 9.65 -39.59 -0.38 -2.66 16 5 C 0.50 8.34 7.67 31.79 0.24 8.58 16 6 O -0.53 -9.75 15.87 -19.45 -0.31 -10.06 16 7 O -0.34 -6.44 10.09 -41.31 -0.42 -6.85 16 8 C 0.13 2.65 5.49 36.00 0.20 2.85 16 9 C -0.23 -5.28 5.53 -104.33 -0.58 -5.86 16 10 C -0.08 -1.80 9.67 -39.66 -0.38 -2.19 16 11 C -0.17 -4.42 8.70 -38.87 -0.34 -4.76 16 12 C 0.12 3.14 5.57 -106.83 -0.60 2.55 16 13 C -0.46 -11.97 9.05 -37.74 -0.34 -12.31 16 14 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 15 C 0.08 1.86 5.14 -17.34 -0.09 1.77 16 16 N -0.79 -20.04 10.97 55.55 0.61 -19.43 16 17 Si 0.91 18.29 29.59 -169.99 -5.03 13.26 16 18 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 19 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 20 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 21 C -0.23 -5.66 9.80 -38.87 -0.38 -6.04 16 22 C -0.06 -1.47 9.67 -39.66 -0.38 -1.85 16 23 H 0.11 0.37 8.14 -51.91 -0.42 -0.05 16 24 H 0.09 0.39 8.14 -51.92 -0.42 -0.03 16 25 H 0.09 0.39 8.14 -51.92 -0.42 -0.03 16 26 H 0.15 1.52 7.41 -52.49 -0.39 1.13 16 27 H 0.14 1.69 8.06 -52.48 -0.42 1.27 16 28 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 29 H 0.06 1.13 8.06 -51.93 -0.42 0.72 16 30 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 31 H 0.12 3.17 6.18 -52.49 -0.32 2.84 16 32 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 33 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 34 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 LS Contribution 319.05 15.07 4.81 4.81 Total: -1.00 -28.91 319.05 -8.52 -37.43 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -4.06 Total: 4.18 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: -1.69 Total: -20.16 kcal Atomic # 7 Polarization: -20.04 SS G_CDS: 0.61 Total: -19.43 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.73 Total: -16.92 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Atomic # 16 Polarization: -0.73 SS G_CDS: -2.44 Total: -3.17 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.91 -8.52 -37.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776107483.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.279 kcal (2) G-P(sol) polarization free energy of solvation -28.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds