Wall clock time and date at job start Tue Mar 31 2020 00:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81002 * 1 3 3 C 1.76211 * 99.99649 * 2 1 4 4 C 1.35240 * 119.99903 * 180.02562 * 3 2 1 5 5 C 1.41023 * 120.00136 * 180.02562 * 4 3 2 6 6 O 1.21737 * 119.99670 * 359.97438 * 5 4 3 7 7 O 1.34998 * 120.00116 * 179.97438 * 5 4 3 8 8 C 1.42894 * 116.99733 * 179.97438 * 7 5 4 9 9 C 1.50698 * 109.47160 * 179.97438 * 8 7 5 10 10 C 1.38633 * 119.75378 * 269.73125 * 9 8 7 11 11 C 1.37619 * 120.25426 * 179.72134 * 10 9 8 12 12 C 1.40714 * 119.74254 * 0.56485 * 11 10 9 13 13 C 1.41391 * 120.24593 * 179.68631 * 12 11 10 14 14 H 1.07999 * 120.00030 * 155.31324 * 13 12 11 15 15 C 1.39951 * 119.99695 * 335.30716 * 13 12 11 16 16 N 1.30814 * 120.00076 * 342.23501 * 15 13 12 17 17 Si 1.86796 * 119.99703 * 162.23400 * 15 13 12 18 18 H 1.48500 * 109.47276 * 94.66742 * 17 15 13 19 19 H 1.48503 * 109.47280 * 214.66677 * 17 15 13 20 20 H 1.48503 * 109.47294 * 334.66556 * 17 15 13 21 21 C 1.40719 * 119.51236 * 359.70495 * 12 11 10 22 22 C 1.37622 * 119.74453 * 0.02562 * 21 12 11 23 23 H 1.09007 * 109.46585 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46973 * 299.99543 * 1 2 3 25 25 H 1.09000 * 109.47145 * 60.00129 * 1 2 3 26 26 H 1.07994 * 119.99777 * 359.97438 * 3 2 1 27 27 H 1.08009 * 120.00282 * 359.72218 * 4 3 2 28 28 H 1.09003 * 109.47084 * 299.99691 * 8 7 5 29 29 H 1.08999 * 109.47663 * 59.99858 * 8 7 5 30 30 H 1.08009 * 119.87121 * 359.97089 * 10 9 8 31 31 H 1.07997 * 120.12994 * 180.27128 * 11 10 9 32 32 H 0.96999 * 119.99924 * 179.97438 * 16 15 13 33 33 H 1.07995 * 120.12788 * 179.97438 * 21 12 11 34 34 H 1.07996 * 119.88006 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7354 0.0000 4 6 3.3867 2.1980 -0.0005 5 6 3.6316 3.5868 0.0000 6 8 2.6990 4.3692 0.0005 7 8 4.9001 4.0485 0.0000 8 6 5.0742 5.4668 0.0000 9 6 6.5455 5.7924 0.0007 10 6 7.2155 5.9466 1.2045 11 6 8.5604 6.2383 1.2171 12 6 9.2529 6.3918 0.0018 13 6 10.6332 6.6981 0.0024 14 1 11.2454 6.4337 -0.8471 15 6 11.2061 7.3440 1.1038 16 7 10.4448 7.9701 1.9638 17 14 13.0581 7.3121 1.3459 18 1 13.6556 8.5372 0.7564 19 1 13.3668 7.2600 2.7975 20 1 13.6243 6.1137 0.6761 21 6 8.5614 6.2386 -1.2141 22 6 7.2177 5.9414 -1.2028 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.2886 2.4294 -0.0004 27 1 4.2142 1.5038 0.0036 28 1 4.6084 5.8901 -0.8900 29 1 4.6084 5.8901 0.8899 30 1 6.6808 5.8334 2.1361 31 1 9.0813 6.3537 2.1561 32 1 10.8418 8.4175 2.7274 33 1 9.0830 6.3546 -2.1527 34 1 6.6848 5.8237 -2.1347 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776107483.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:49 Heat of formation + Delta-G solvation = -70.459975 kcal Electronic energy + Delta-G solvation = -17681.178476 eV Core-core repulsion = 14669.705875 eV Total energy + Delta-G solvation = -3011.472601 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.076 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.57570 -39.51301 -37.72296 -35.67524 -34.28361 -32.54808 -31.23510 -30.01569 -29.07763 -26.44267 -24.85230 -22.95814 -21.87365 -21.23761 -19.27840 -19.21093 -17.83663 -17.47514 -17.30561 -17.08765 -16.07178 -15.66056 -15.47247 -15.07367 -14.64003 -14.57351 -14.22595 -14.02451 -13.86307 -13.57229 -13.43018 -13.21042 -13.02983 -12.78029 -12.40997 -12.21526 -11.83758 -11.72884 -11.63214 -11.45737 -11.40295 -11.28170 -11.03068 -9.44123 -9.34097 -8.73949 -8.69038 -6.39403 -0.32315 0.33041 0.78483 1.10641 1.24155 1.38802 1.45584 1.54718 1.91534 2.18066 2.21934 2.75878 3.70005 3.86912 4.09763 4.10695 4.11386 4.27170 4.28814 4.47960 4.50472 4.55162 4.68877 4.88094 4.94699 5.00082 5.12027 5.29928 5.39084 5.51355 5.65051 5.88180 6.05459 6.14229 6.31598 6.63972 6.77269 6.88453 6.97027 8.28243 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.040703 B = 0.002674 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.747364 B =10467.557280 C =10669.374551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 S -0.083 6.083 3 C -0.044 4.044 4 C -0.212 4.212 5 C 0.502 3.498 6 O -0.555 6.555 7 O -0.353 6.353 8 C 0.141 3.859 9 C -0.230 4.230 10 C -0.081 4.081 11 C -0.193 4.193 12 C 0.087 3.913 13 C -0.493 4.493 14 H 0.080 0.920 15 C 0.034 3.966 16 N -0.819 5.819 17 Si 0.985 3.015 18 H -0.261 1.261 19 H -0.265 1.265 20 H -0.258 1.258 21 C -0.245 4.245 22 C -0.066 4.066 23 H 0.130 0.870 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.152 0.848 27 H 0.151 0.849 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.291 0.709 33 H 0.104 0.896 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.956 -13.224 -1.518 20.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 S 0.161 5.839 3 C -0.178 4.178 4 C -0.245 4.245 5 C 0.350 3.650 6 O -0.450 6.450 7 O -0.270 6.270 8 C 0.067 3.933 9 C -0.231 4.231 10 C -0.100 4.100 11 C -0.213 4.213 12 C 0.084 3.916 13 C -0.522 4.522 14 H 0.098 0.902 15 C -0.182 4.182 16 N -0.445 5.445 17 Si 0.805 3.195 18 H -0.186 1.186 19 H -0.190 1.190 20 H -0.181 1.181 21 C -0.264 4.264 22 C -0.084 4.084 23 H 0.148 0.852 24 H 0.117 0.883 25 H 0.117 0.883 26 H 0.169 0.831 27 H 0.169 0.831 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.101 0.899 33 H 0.122 0.878 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.593 -13.880 -1.307 20.182 hybrid contribution 0.003 1.649 0.237 1.666 sum -14.589 -12.231 -1.070 19.068 Atomic orbital electron populations 1.23926 0.91463 1.09232 1.07454 1.86130 1.10249 0.99577 1.87896 1.26177 0.99919 1.00319 0.91417 1.20687 0.98575 0.91947 1.13252 1.20126 0.80830 0.91106 0.72943 1.90835 1.44897 1.60160 1.49113 1.86382 1.29541 1.27682 1.83390 1.21124 0.93628 0.76909 1.01594 1.18999 0.94204 1.16274 0.93616 1.20775 0.94359 0.98310 0.96537 1.21269 0.94199 1.07577 0.98239 1.18053 0.93823 0.87832 0.91848 1.19916 0.94284 1.34561 1.03422 0.90177 1.26846 1.05790 0.91673 0.93858 1.69869 1.40143 1.22928 1.11519 0.85150 0.75716 0.79891 0.78716 1.18580 1.18953 1.18141 1.21176 0.94654 1.13624 0.96984 1.20709 0.93994 0.97143 0.96594 0.85159 0.88334 0.88278 0.83079 0.83108 0.91303 0.91853 0.87630 0.87747 0.89865 0.87800 0.86438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.48 113.37 1.19 0.24 16 2 S -0.08 -1.16 22.69 -56.49 -1.28 -2.44 16 3 C -0.04 -0.86 9.53 67.13 0.64 -0.22 16 4 C -0.21 -5.30 9.65 22.26 0.21 -5.08 16 5 C 0.50 16.47 7.67 68.50 0.53 16.99 16 6 O -0.55 -20.07 15.87 19.06 0.30 -19.76 16 7 O -0.35 -13.24 10.09 -59.17 -0.60 -13.84 16 8 C 0.14 5.45 5.49 71.24 0.39 5.84 16 9 C -0.23 -10.34 5.53 -19.67 -0.11 -10.45 16 10 C -0.08 -3.93 9.67 22.22 0.21 -3.71 16 11 C -0.19 -10.41 8.70 22.73 0.20 -10.21 16 12 C 0.09 4.77 5.57 -21.29 -0.12 4.65 16 13 C -0.49 -26.63 9.05 23.46 0.21 -26.42 16 14 H 0.08 4.14 7.91 -2.91 -0.02 4.12 16 15 C 0.03 1.72 5.14 85.26 0.44 2.15 16 16 N -0.82 -42.77 10.97 21.83 0.24 -42.53 16 17 Si 0.99 37.78 29.59 68.60 2.03 39.81 16 18 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 19 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 20 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 21 C -0.24 -12.25 9.80 22.73 0.22 -12.03 16 22 C -0.07 -3.00 9.67 22.22 0.21 -2.79 16 23 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 24 H 0.10 0.51 8.14 -2.40 -0.02 0.49 16 25 H 0.10 0.50 8.14 -2.40 -0.02 0.48 16 26 H 0.15 2.79 7.41 -2.91 -0.02 2.77 16 27 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 28 H 0.07 2.51 8.07 -2.39 -0.02 2.49 16 29 H 0.06 2.38 8.06 -2.39 -0.02 2.36 16 30 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 31 H 0.10 5.82 6.18 -2.91 -0.02 5.80 16 32 H 0.29 13.61 8.30 -92.71 -0.77 12.84 16 33 H 0.10 4.85 8.06 -2.91 -0.02 4.82 16 34 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -63.63 319.05 6.02 -57.60 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 1.10 Total: 22.19 kcal Atomic # 6 Polarization: -45.27 SS G_CDS: 4.23 Total: -41.03 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 0.24 Total: -42.53 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -0.29 Total: -33.60 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.81 kcal Atomic # 16 Polarization: -1.16 SS G_CDS: -1.28 Total: -2.44 kcal Total: -63.63 6.02 -57.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776107483.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.857 kcal (2) G-P(sol) polarization free energy of solvation -63.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds