Wall clock time and date at job start Tue Mar 31 2020 00:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 119.99661 * 2 1 4 4 H 1.48508 * 109.47074 * 270.00132 * 3 2 1 5 5 H 1.48499 * 109.47321 * 30.00012 * 3 2 1 6 6 H 1.48501 * 109.47172 * 150.00200 * 3 2 1 7 7 C 1.37875 * 120.00627 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99755 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00409 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47334 * 179.97438 * 9 7 2 11 11 N 1.46507 * 109.47450 * 180.02562 * 10 9 7 12 12 C 1.34774 * 119.99807 * 180.02562 * 11 10 9 13 13 O 1.21528 * 120.00589 * 359.97438 * 12 11 10 14 14 C 1.47953 * 119.99347 * 179.97438 * 12 11 10 15 15 C 1.39606 * 119.99156 * 179.97438 * 14 12 11 16 16 C 1.37748 * 120.00919 * 180.02562 * 15 14 12 17 17 C 1.39664 * 119.99339 * 0.02562 * 16 15 14 18 18 C 1.47739 * 120.00926 * 179.97438 * 17 16 15 19 19 N 1.34784 * 120.00093 * 214.99887 * 18 17 16 20 20 S 1.71199 * 119.99935 * 34.99990 * 18 17 16 21 21 C 1.39674 * 119.98242 * 0.24936 * 17 16 15 22 22 C 1.37743 * 119.99096 * 359.51413 * 21 17 16 23 23 H 0.96997 * 120.00837 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46809 * 60.00469 * 9 7 2 25 25 H 1.08993 * 109.47669 * 300.00524 * 9 7 2 26 26 H 1.09001 * 109.47100 * 60.00169 * 10 9 7 27 27 H 1.09002 * 109.47356 * 300.00737 * 10 9 7 28 28 H 0.97001 * 119.99522 * 359.97438 * 11 10 9 29 29 H 1.08006 * 119.99976 * 359.97438 * 15 14 12 30 30 H 1.08000 * 120.00627 * 179.97438 * 16 15 14 31 31 H 0.97000 * 119.99339 * 359.97438 * 19 18 17 32 32 H 0.96995 * 120.00015 * 179.72471 * 19 18 17 33 33 H 1.08003 * 120.00109 * 179.74544 * 21 17 16 34 34 H 1.08001 * 119.99226 * 180.20888 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0465 -1.4002 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6363 -0.0010 11 7 5.4867 -2.6363 -0.0009 12 6 6.1606 -3.8034 -0.0014 13 8 5.5530 -4.8560 -0.0013 14 6 7.6401 -3.8033 -0.0019 15 6 8.3381 -5.0124 -0.0018 16 6 9.7155 -5.0126 -0.0017 17 6 10.4140 -3.8032 -0.0012 18 6 11.8914 -3.8031 -0.0006 19 7 12.5650 -2.8470 0.6693 20 16 12.7478 -5.0174 -0.8508 21 6 9.7154 -2.5937 0.0045 22 6 8.3379 -2.5942 -0.0005 23 1 -0.4851 0.8400 0.0004 24 1 3.8752 -0.6803 0.8889 25 1 3.8746 -0.6798 -0.8910 26 1 3.6580 -3.1503 -0.8907 27 1 3.6586 -3.1500 0.8892 28 1 5.9716 -1.7962 -0.0014 29 1 7.7980 -5.9477 -0.0009 30 1 10.2555 -5.9480 -0.0012 31 1 12.0796 -2.1588 1.1507 32 1 13.5349 -2.8492 0.6730 33 1 10.2552 -1.6583 0.0090 34 1 7.7977 -1.6590 0.0005 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784697460.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:19 Heat of formation + Delta-G solvation = -3.794302 kcal Electronic energy + Delta-G solvation = -17840.939839 eV Core-core repulsion = 14864.650829 eV Total energy + Delta-G solvation = -2976.289009 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.46732 -38.94589 -36.90860 -35.21084 -33.03180 -32.01104 -31.45104 -30.09595 -26.63362 -24.80212 -23.37630 -22.49659 -20.95314 -20.47341 -19.17753 -18.23262 -17.39448 -17.00601 -16.02044 -15.84138 -15.22536 -15.01014 -14.76674 -14.23896 -14.10950 -13.88791 -13.61224 -13.43139 -12.72703 -12.65733 -12.56683 -11.72558 -11.58701 -11.38926 -11.30006 -10.50095 -10.42453 -10.05480 -9.76139 -9.58191 -9.52031 -9.40083 -8.76880 -8.66869 -8.60039 -8.07733 -6.17267 -4.18056 -0.42099 0.84622 0.88446 1.59672 2.59144 2.86770 3.19068 3.25671 3.27569 3.29653 3.54679 3.65468 4.24997 4.30986 4.38417 4.63977 4.82587 4.96621 5.15261 5.18231 5.47311 5.65004 5.73217 5.88254 5.96146 6.04712 6.09423 6.23440 6.30312 6.44968 6.55232 7.01622 7.12684 7.58149 7.68241 8.29541 8.38442 8.86890 9.42247 10.95724 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.033107 B = 0.002998 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.543479 B = 9336.585562 C =10071.840959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.525 4.525 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.128 3.872 11 N -0.717 5.717 12 C 0.544 3.456 13 O -0.533 6.533 14 C -0.089 4.089 15 C -0.067 4.067 16 C -0.054 4.054 17 C -0.099 4.099 18 C 0.397 3.603 19 N -0.761 5.761 20 S -0.550 6.550 21 C -0.091 4.091 22 C -0.094 4.094 23 H 0.265 0.735 24 H 0.022 0.978 25 H 0.018 0.982 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.395 0.605 29 H 0.149 0.851 30 H 0.150 0.850 31 H 0.405 0.595 32 H 0.423 0.577 33 H 0.132 0.868 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.606 -1.575 3.151 24.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.563 4.563 8 H 0.095 0.905 9 C -0.060 4.060 10 C 0.006 3.994 11 N -0.367 5.367 12 C 0.329 3.671 13 O -0.412 6.412 14 C -0.094 4.094 15 C -0.086 4.086 16 C -0.075 4.075 17 C -0.104 4.104 18 C 0.143 3.857 19 N -0.294 5.294 20 S -0.415 6.415 21 C -0.114 4.114 22 C -0.112 4.112 23 H 0.075 0.925 24 H 0.040 0.960 25 H 0.036 0.964 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.230 0.770 29 H 0.167 0.833 30 H 0.168 0.832 31 H 0.237 0.763 32 H 0.258 0.742 33 H 0.150 0.850 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 24.612 -2.927 2.642 24.926 hybrid contribution 0.341 2.479 0.591 2.571 sum 24.953 -0.449 3.233 25.166 Atomic orbital electron populations 1.69892 1.06296 1.27131 1.50162 1.25001 0.94767 0.99149 0.94338 0.86754 0.80207 0.83589 0.78512 1.20187 1.21231 1.19151 1.20896 0.88537 0.94962 1.51901 0.90541 1.19800 0.98160 0.91163 0.96855 1.21607 0.75289 1.00430 1.02027 1.46295 1.09509 1.07593 1.73306 1.18233 0.86529 0.84582 0.77721 1.90785 1.69568 1.31101 1.49701 1.20464 0.94116 0.94251 1.00581 1.21365 0.93255 0.98531 0.95468 1.21484 0.93723 0.97540 0.94789 1.19144 0.89481 0.95305 1.06462 1.24318 0.93237 0.86644 0.81527 1.43490 1.12223 1.26862 1.46816 1.93416 1.69518 1.32003 1.46580 1.21137 0.94434 0.96506 0.99285 1.21285 0.93811 0.97897 0.98254 0.92472 0.95984 0.96381 0.91535 0.91537 0.76999 0.83294 0.83231 0.76277 0.74198 0.85043 0.84389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.70 13.96 55.43 0.77 -25.92 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 20.26 27.47 -169.99 -4.67 15.59 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -5.70 6.54 56.52 0.37 -5.33 16 7 C -0.52 -14.20 9.66 -34.44 -0.33 -14.54 16 8 H 0.08 2.25 7.99 -52.48 -0.42 1.84 16 9 C -0.02 -0.48 4.16 -27.89 -0.12 -0.59 16 10 C 0.13 2.46 5.61 -4.04 -0.02 2.43 16 11 N -0.72 -10.78 5.51 -61.22 -0.34 -11.12 16 12 C 0.54 8.26 7.78 -12.28 -0.10 8.17 16 13 O -0.53 -10.11 16.33 5.34 0.09 -10.02 16 14 C -0.09 -1.01 5.88 -104.90 -0.62 -1.63 16 15 C -0.07 -0.71 9.58 -39.25 -0.38 -1.08 16 16 C -0.05 -0.50 9.40 -39.23 -0.37 -0.87 16 17 C -0.10 -0.80 5.74 -104.95 -0.60 -1.40 16 18 C 0.40 3.09 7.04 -12.37 -0.09 3.00 16 19 N -0.76 -2.56 8.77 32.71 0.29 -2.28 16 20 S -0.55 -6.80 29.90 -107.50 -3.21 -10.01 16 21 C -0.09 -0.60 9.31 -39.23 -0.37 -0.97 16 22 C -0.09 -0.78 9.52 -39.25 -0.37 -1.15 16 23 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 25 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 26 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.40 4.72 6.49 -40.82 -0.27 4.46 16 29 H 0.15 1.59 7.64 -52.48 -0.40 1.19 16 30 H 0.15 1.34 7.53 -52.49 -0.40 0.94 16 31 H 0.41 0.26 7.95 -40.82 -0.32 -0.07 16 32 H 0.42 0.95 8.81 -40.82 -0.36 0.59 16 33 H 0.13 0.45 7.55 -52.48 -0.40 0.05 16 34 H 0.14 0.90 6.39 -52.49 -0.34 0.56 16 LS Contribution 311.54 15.07 4.69 4.69 Total: -1.00 -35.21 311.54 -9.51 -44.72 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -3.67 Total: 1.14 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -3.45 Total: -6.79 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.72 Total: -39.32 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.67 Total: 15.59 kcal Atomic # 16 Polarization: -6.80 SS G_CDS: -3.21 Total: -10.01 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -35.21 -9.51 -44.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784697460.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.926 kcal (2) G-P(sol) polarization free energy of solvation -35.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds