Wall clock time and date at job start Tue Mar 31 2020 00:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31425 * 1 3 3 Si 1.86797 * 119.99818 * 2 1 4 4 H 1.48499 * 109.47532 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47063 * 299.99908 * 3 2 1 6 6 H 1.48500 * 109.47431 * 59.99739 * 3 2 1 7 7 C 1.38796 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99657 * 180.02562 * 7 2 1 9 9 O 1.34855 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.34766 * 117.00280 * 180.02562 * 9 7 2 11 11 O 1.21540 * 119.99972 * 0.02562 * 10 9 7 12 12 C 1.47416 * 120.00358 * 179.97438 * 10 9 7 13 13 C 1.39823 * 120.09879 * 180.02562 * 12 10 9 14 14 C 1.37669 * 119.90328 * 179.97438 * 13 12 10 15 15 C 1.39016 * 120.09888 * 359.97438 * 14 13 12 16 16 O 1.35704 * 119.90394 * 179.97438 * 15 14 13 17 17 C 1.42891 * 117.00087 * 354.39661 * 16 15 14 18 18 H 1.09000 * 110.45857 * 326.47892 * 17 16 15 19 19 C 1.54508 * 110.51276 * 203.87471 * 17 16 15 20 20 C 1.54476 * 104.06677 * 241.35671 * 19 17 16 21 21 O 1.44431 * 104.89870 * 335.96604 * 20 19 17 22 22 C 1.44682 * 105.13752 * 40.49571 * 21 20 19 23 23 C 1.39019 * 120.19196 * 0.25346 * 15 14 13 24 24 C 1.37674 * 120.09767 * 359.49180 * 23 15 14 25 25 H 0.96992 * 120.00392 * 359.97438 * 1 2 3 26 26 H 1.08009 * 120.04898 * 359.95431 * 13 12 10 27 27 H 1.08005 * 119.95352 * 180.02562 * 14 13 12 28 28 H 1.08998 * 110.51417 * 122.71189 * 19 17 16 29 29 H 1.09004 * 110.62543 * 0.06062 * 19 17 16 30 30 H 1.09001 * 110.37323 * 94.84907 * 20 19 17 31 31 H 1.08999 * 110.37770 * 217.07796 * 20 19 17 32 32 H 1.08998 * 110.35647 * 200.67558 * 22 21 20 33 33 H 1.09000 * 110.45513 * 78.41035 * 22 21 20 34 34 H 1.08003 * 119.95455 * 179.72461 * 23 15 14 35 35 H 1.07993 * 120.05439 * 180.25502 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3465 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3965 1.2124 7 6 2.0082 -1.2020 -0.0005 8 1 3.0883 -1.2020 -0.0001 9 8 1.3340 -2.3699 -0.0005 10 6 2.0680 -3.5002 -0.0005 11 8 3.2817 -3.4365 -0.0001 12 6 1.3988 -4.8137 0.0000 13 6 2.1584 -5.9876 0.0006 14 6 1.5293 -7.2122 0.0016 15 6 0.1410 -7.2827 0.0027 16 8 -0.4751 -8.4918 0.0032 17 6 0.3594 -9.6450 -0.1217 18 1 1.2194 -9.4262 -0.7545 19 6 -0.4438 -10.8352 -0.6924 20 6 -0.3754 -11.9030 0.4218 21 8 0.8135 -11.5783 1.1749 22 6 0.8181 -10.1347 1.2699 23 6 -0.6182 -6.1181 -0.0026 24 6 0.0026 -4.8892 0.0016 25 1 -0.4850 0.8399 0.0004 26 1 3.2372 -5.9338 -0.0002 27 1 2.1153 -8.1194 0.0025 28 1 0.0205 -11.2064 -1.6060 29 1 -1.4776 -10.5456 -0.8809 30 1 -1.2570 -11.8426 1.0600 31 1 -0.2895 -12.8993 -0.0120 32 1 1.8227 -9.7722 1.4875 33 1 0.1205 -9.8013 2.0383 34 1 -1.6966 -6.1773 -0.0062 35 1 -0.5879 -3.9850 0.0016 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789193808.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:49 Heat of formation + Delta-G solvation = -153.783156 kcal Electronic energy + Delta-G solvation = -20619.452764 eV Core-core repulsion = 17161.614128 eV Total energy + Delta-G solvation = -3457.838636 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.73444 -41.01571 -39.77752 -38.13455 -37.12882 -34.34592 -32.84148 -32.16914 -31.16931 -29.80393 -27.63819 -25.07878 -24.24833 -23.83432 -22.14507 -21.67558 -19.90577 -19.64631 -18.87990 -17.59479 -17.19962 -16.89128 -16.74059 -16.54901 -16.30943 -16.07647 -15.57827 -15.44782 -14.89197 -14.55929 -14.27868 -14.16697 -13.76468 -13.51601 -13.37365 -13.15995 -12.95135 -12.45293 -12.35668 -12.35386 -12.18033 -12.01175 -11.73865 -11.60049 -11.16717 -10.88525 -10.72329 -10.16362 -9.38662 -8.57866 -6.34785 -0.22306 0.26467 1.33859 1.35286 1.52581 1.74637 1.91697 2.10146 2.69905 2.73286 3.00176 3.02488 3.37859 3.65607 3.71207 3.72913 3.89416 4.12204 4.17105 4.23023 4.27386 4.46153 4.57042 4.60372 4.70944 4.80866 4.84853 4.94735 4.99011 5.07249 5.11056 5.26112 5.45277 5.50445 5.69179 5.79630 6.27185 6.59299 6.86962 7.71399 8.63038 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.053461 B = 0.003104 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.618230 B = 9017.592368 C = 9371.567236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C -0.003 4.003 3 Si 1.020 2.980 4 H -0.265 1.265 5 H -0.258 1.258 6 H -0.258 1.258 7 C -0.420 4.420 8 H 0.082 0.918 9 O -0.233 6.233 10 C 0.436 3.564 11 O -0.586 6.586 12 C -0.163 4.163 13 C -0.026 4.026 14 C -0.207 4.207 15 C 0.157 3.843 16 O -0.299 6.299 17 C 0.039 3.961 18 H 0.105 0.895 19 C -0.148 4.148 20 C 0.040 3.960 21 O -0.388 6.388 22 C 0.022 3.978 23 C -0.156 4.156 24 C -0.034 4.034 25 H 0.281 0.719 26 H 0.136 0.864 27 H 0.167 0.833 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.116 0.884 32 H 0.108 0.892 33 H 0.070 0.930 34 H 0.159 0.841 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.746 -21.644 -0.805 21.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.204 4.204 3 Si 0.838 3.162 4 H -0.189 1.189 5 H -0.182 1.182 6 H -0.182 1.182 7 C -0.496 4.496 8 H 0.099 0.901 9 O -0.141 6.141 10 C 0.286 3.714 11 O -0.486 6.486 12 C -0.164 4.164 13 C -0.044 4.044 14 C -0.225 4.225 15 C 0.111 3.889 16 O -0.212 6.212 17 C -0.017 4.017 18 H 0.122 0.878 19 C -0.185 4.185 20 C -0.037 4.037 21 O -0.307 6.307 22 C -0.055 4.055 23 C -0.174 4.174 24 C -0.053 4.053 25 H 0.090 0.910 26 H 0.154 0.846 27 H 0.184 0.816 28 H 0.126 0.874 29 H 0.118 0.882 30 H 0.087 0.913 31 H 0.134 0.866 32 H 0.126 0.874 33 H 0.088 0.912 34 H 0.177 0.823 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.701 -21.688 -0.702 22.012 hybrid contribution 0.506 1.193 -0.008 1.296 sum -3.195 -20.495 -0.709 20.754 Atomic orbital electron populations 1.70056 1.07610 1.29524 1.46195 1.26575 0.96953 1.02269 0.94555 0.84545 0.77743 0.74527 0.79374 1.18932 1.18241 1.18249 1.21523 0.92281 0.81087 1.54696 0.90074 1.83917 1.39864 1.13959 1.76385 1.21718 0.85849 0.86553 0.77275 1.90569 1.16506 1.88571 1.52934 1.19224 0.94674 0.89929 1.12572 1.21071 1.00521 0.90101 0.92724 1.21342 0.93331 0.98530 1.09327 1.19239 0.91168 0.85511 0.92995 1.86123 1.36345 1.11854 1.86862 1.24163 0.94997 0.84519 0.98047 0.87754 1.23062 1.02808 0.92557 1.00080 1.23643 0.88043 0.99994 0.91980 1.89217 1.44861 1.20645 1.75974 1.24061 1.03628 0.81510 0.96340 1.20504 1.01503 0.88510 1.06916 1.21303 0.92761 0.98556 0.92666 0.90986 0.84598 0.81564 0.87447 0.88241 0.91327 0.86613 0.87385 0.91182 0.82339 0.85167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.03 13.67 21.63 0.30 -52.74 16 2 C 0.00 -0.16 5.49 84.89 0.47 0.31 16 3 Si 1.02 43.78 29.55 68.60 2.03 45.81 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 6 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 7 C -0.42 -26.17 9.65 67.95 0.66 -25.51 16 8 H 0.08 5.15 6.86 -2.91 -0.02 5.13 16 9 O -0.23 -14.25 8.98 10.98 0.10 -14.15 16 10 C 0.44 23.69 7.83 70.24 0.55 24.24 16 11 O -0.59 -34.11 15.59 19.71 0.31 -33.81 16 12 C -0.16 -6.82 5.87 -20.09 -0.12 -6.94 16 13 C -0.03 -0.86 9.59 22.52 0.22 -0.65 16 14 C -0.21 -5.17 8.84 22.32 0.20 -4.97 16 15 C 0.16 3.94 6.67 22.64 0.15 4.09 16 16 O -0.30 -6.15 9.76 -90.24 -0.88 -7.03 16 17 C 0.04 0.60 2.94 31.61 0.09 0.69 16 18 H 0.10 1.41 6.27 -2.39 -0.01 1.39 16 19 C -0.15 -1.62 6.89 31.61 0.22 -1.40 16 20 C 0.04 0.45 7.62 72.48 0.55 1.00 16 21 O -0.39 -6.80 11.67 -148.98 -1.74 -8.54 16 22 C 0.02 0.35 7.09 72.49 0.51 0.86 16 23 C -0.16 -4.43 9.97 22.32 0.22 -4.21 16 24 C -0.03 -1.27 9.61 22.52 0.22 -1.05 16 25 H 0.28 14.92 8.31 -92.71 -0.77 14.15 16 26 H 0.14 4.53 7.64 -2.91 -0.02 4.51 16 27 H 0.17 2.91 5.51 -2.91 -0.02 2.90 16 28 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.10 1.05 8.00 -2.38 -0.02 1.03 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 31 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.11 1.54 7.71 -2.39 -0.02 1.52 16 33 H 0.07 1.20 8.08 -2.39 -0.02 1.18 16 34 H 0.16 3.68 8.06 -2.91 -0.02 3.66 16 35 H 0.13 5.25 7.60 -2.91 -0.02 5.23 16 Total: -1.00 -75.87 307.08 5.16 -70.71 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 1.12 Total: 13.30 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: 3.93 Total: -13.54 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.30 Total: -52.74 kcal Atomic # 8 Polarization: -61.32 SS G_CDS: -2.21 Total: -63.53 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -75.87 5.16 -70.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789193808.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.071 kcal (2) G-P(sol) polarization free energy of solvation -75.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds