Wall clock time and date at job start Mon Mar 30 2020 23:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47410 * 2 1 4 4 C 1.34242 * 125.74690 * 125.29800 * 3 2 1 5 5 C 1.38160 * 107.40403 * 180.15523 * 4 3 2 6 6 C 1.47253 * 126.43173 * 179.83286 * 5 4 3 7 7 O 1.21550 * 119.99896 * 179.68904 * 6 5 4 8 8 O 1.34787 * 119.99976 * 359.68864 * 6 5 4 9 9 C 1.34894 * 116.99993 * 180.02562 * 8 6 5 10 10 H 1.07997 * 120.00240 * 0.02562 * 9 8 6 11 11 C 1.38762 * 119.99998 * 179.73031 * 9 8 6 12 12 N 1.31444 * 120.00294 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 119.99974 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47209 * 90.00553 * 13 11 9 15 15 H 1.48506 * 109.47294 * 210.00401 * 13 11 9 16 16 H 1.48501 * 109.47275 * 330.00304 * 13 11 9 17 17 C 1.41355 * 107.13808 * 359.57431 * 5 4 3 18 18 C 1.50692 * 125.99254 * 180.28308 * 17 5 4 19 19 F 1.39900 * 109.47356 * 90.00059 * 18 17 5 20 20 F 1.39901 * 109.47302 * 209.99897 * 18 17 5 21 21 F 1.39900 * 109.47139 * 329.99866 * 18 17 5 22 22 N 1.30434 * 108.01469 * 0.25865 * 17 5 4 23 23 H 1.09010 * 109.46728 * 299.99963 * 1 2 3 24 24 H 1.08993 * 109.46985 * 59.99945 * 1 2 3 25 25 H 1.08993 * 109.47378 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47047 * 239.99723 * 2 1 3 27 27 H 1.09003 * 109.46960 * 120.00173 * 2 1 3 28 28 H 1.08003 * 126.29711 * 0.02562 * 4 3 2 29 29 H 0.96995 * 120.00248 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8734 1.9107 0.8892 5 6 3.0710 3.2318 0.5364 6 6 3.9310 4.2035 1.2324 7 8 4.0237 5.3413 0.8150 8 8 4.6155 3.8312 2.3322 9 6 5.3843 4.7698 2.9219 10 1 5.4303 5.7671 2.5101 11 6 6.1113 4.4555 4.0613 12 7 6.8600 5.3702 4.6363 13 14 6.0248 2.7330 4.7790 14 1 7.0853 1.8897 4.1713 15 1 6.2259 2.7984 6.2489 16 1 4.6942 2.1415 4.4874 17 6 2.2972 3.4739 -0.6215 18 6 2.2054 4.7796 -1.3683 19 9 3.1957 4.8229 -2.3555 20 9 0.9454 4.8870 -1.9667 21 9 2.3898 5.8411 -0.4759 22 7 1.6771 2.3688 -0.9306 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.3224 1.3987 1.7275 29 1 7.3679 5.1506 5.4330 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797935344.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:21 Heat of formation + Delta-G solvation = -143.801587 kcal Electronic energy + Delta-G solvation = -21992.451833 eV Core-core repulsion = 17889.648947 eV Total energy + Delta-G solvation = -4102.802887 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.066 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.73221 -47.33991 -47.09292 -41.54804 -38.87931 -35.46097 -34.73077 -32.34218 -31.19744 -30.13536 -26.70129 -25.63486 -23.71018 -22.39493 -20.91836 -19.84916 -18.20418 -18.09421 -17.80881 -17.61096 -16.89221 -16.23624 -15.71471 -15.02701 -14.69740 -14.23889 -14.19490 -14.03010 -13.85432 -13.66677 -13.48856 -13.28750 -13.21368 -12.86892 -12.51998 -12.46516 -12.16648 -11.99713 -11.76923 -11.31172 -11.10388 -10.55476 -10.45256 -9.89183 -9.72253 -9.18143 -8.79055 -8.69135 -6.38709 -4.11218 1.42641 1.75836 1.86874 2.94247 3.16031 3.19478 3.28197 3.77637 3.88633 4.09669 4.18057 4.21330 4.46466 4.57891 4.70255 4.73990 4.82926 5.12332 5.16765 5.24800 5.39278 5.47345 5.75261 5.86626 6.40686 6.65086 7.17100 7.72158 8.03205 8.63626 8.98866 9.66695 10.69797 Molecular weight = 278.07amu Principal moments of inertia in cm(-1) A = 0.017023 B = 0.006938 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.418107 B = 4034.980708 C = 5447.170259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.125 3.875 3 N -0.349 5.349 4 C 0.111 3.889 5 C -0.203 4.203 6 C 0.476 3.524 7 O -0.518 6.518 8 O -0.248 6.248 9 C -0.372 4.372 10 H 0.113 0.887 11 C 0.064 3.936 12 N -0.872 5.872 13 Si 0.905 3.095 14 H -0.273 1.273 15 H -0.282 1.282 16 H -0.262 1.262 17 C 0.030 3.970 18 C 0.553 3.447 19 F -0.170 7.170 20 F -0.177 7.177 21 F -0.132 7.132 22 N -0.246 5.246 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.106 0.894 28 H 0.200 0.800 29 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.274 -12.900 -8.095 18.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.005 3.995 3 N -0.130 5.130 4 C -0.038 4.038 5 C -0.216 4.216 6 C 0.321 3.679 7 O -0.412 6.412 8 O -0.157 6.157 9 C -0.448 4.448 10 H 0.130 0.870 11 C -0.139 4.139 12 N -0.511 5.511 13 Si 0.731 3.269 14 H -0.198 1.198 15 H -0.207 1.207 16 H -0.186 1.186 17 C -0.138 4.138 18 C 0.497 3.503 19 F -0.151 7.151 20 F -0.159 7.159 21 F -0.112 7.112 22 N -0.069 5.069 23 H 0.083 0.917 24 H 0.092 0.908 25 H 0.097 0.903 26 H 0.111 0.889 27 H 0.124 0.876 28 H 0.217 0.783 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.951 -13.230 -8.835 19.898 hybrid contribution 0.667 -0.226 0.938 1.173 sum -11.284 -13.455 -7.897 19.255 Atomic orbital electron populations 1.22089 0.93209 1.03246 1.04044 1.21952 0.96608 0.76193 1.04772 1.48566 1.34027 1.10322 1.20122 1.23374 0.92053 0.93360 0.94966 1.19421 1.07886 0.94293 1.00007 1.19286 0.81282 0.86014 0.81306 1.90782 1.63984 1.20248 1.66187 1.83513 1.52268 1.43092 1.36787 1.20695 1.21534 0.93500 1.09070 0.86987 1.24534 0.94958 0.99191 0.95260 1.69601 1.27346 1.33751 1.20422 0.86230 0.79411 0.83248 0.78058 1.19849 1.20748 1.18575 1.22119 1.00188 0.94287 0.97190 1.16817 0.73698 0.83003 0.76801 1.93216 1.62176 1.96696 1.63017 1.93193 1.41536 1.96584 1.84567 1.93437 1.94471 1.56720 1.66619 1.76999 1.21474 0.95727 1.12675 0.91675 0.90834 0.90271 0.88912 0.87590 0.78294 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.09 37.16 0.37 -0.78 15 2 C 0.12 0.92 7.21 -4.04 -0.03 0.89 15 3 N -0.35 -4.45 3.65 -60.78 -0.22 -4.67 15 4 C 0.11 1.62 11.29 -16.53 -0.19 1.43 15 5 C -0.20 -3.91 6.09 -105.08 -0.64 -4.55 15 6 C 0.48 11.53 7.85 34.39 0.27 11.80 15 7 O -0.52 -13.97 12.51 -19.30 -0.24 -14.21 15 8 O -0.25 -6.39 8.40 -21.91 -0.18 -6.58 15 9 C -0.37 -10.88 10.11 30.93 0.31 -10.57 15 10 H 0.11 3.63 7.09 -52.49 -0.37 3.26 15 11 C 0.06 1.80 5.49 -17.52 -0.10 1.70 15 12 N -0.87 -25.45 13.96 55.48 0.77 -24.67 15 13 Si 0.91 20.42 28.62 -169.99 -4.86 15.56 15 14 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 15 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 16 H -0.26 -5.57 7.11 56.52 0.40 -5.16 15 17 C 0.03 0.55 6.61 -82.00 -0.54 0.01 15 18 C 0.55 10.20 3.37 36.00 0.12 10.32 15 19 F -0.17 -3.12 17.30 2.25 0.04 -3.08 15 20 F -0.18 -2.94 17.25 2.25 0.04 -2.91 15 21 F -0.13 -2.77 13.56 2.25 0.03 -2.74 15 22 N -0.25 -3.87 12.26 33.90 0.42 -3.46 15 23 H 0.06 0.51 8.14 -51.92 -0.42 0.08 15 24 H 0.07 0.62 8.14 -51.93 -0.42 0.19 15 25 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 15 26 H 0.09 0.57 8.14 -51.93 -0.42 0.14 15 27 H 0.11 0.50 8.06 -51.93 -0.42 0.08 15 28 H 0.20 2.33 8.06 -52.48 -0.42 1.90 15 29 H 0.28 7.44 8.31 -40.82 -0.34 7.10 15 LS Contribution 281.01 15.07 4.23 4.23 Total: -1.00 -33.70 281.01 -2.43 -36.13 By element: Atomic # 1 Polarization: -1.82 SS G_CDS: -2.04 Total: -3.86 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: -0.41 Total: 10.25 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: 0.97 Total: -32.80 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.43 Total: -20.79 kcal Atomic # 9 Polarization: -8.83 SS G_CDS: 0.11 Total: -8.72 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.86 Total: 15.56 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.70 -2.43 -36.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797935344.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.668 kcal (2) G-P(sol) polarization free energy of solvation -33.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds