Wall clock time and date at job start Tue Mar 31 2020 01:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46509 * 109.46920 * 17.99035 * 3 2 1 5 5 C 1.37094 * 119.99856 * 263.92312 * 4 3 2 6 6 H 1.08001 * 119.99933 * 199.75326 * 5 4 3 7 7 C 1.38951 * 120.00278 * 19.76388 * 5 4 3 8 8 N 1.31411 * 119.99988 * 21.73254 * 7 5 4 9 9 Si 1.86797 * 119.99837 * 201.74202 * 7 5 4 10 10 H 1.48499 * 109.47292 * 59.99749 * 9 7 5 11 11 H 1.48504 * 109.46845 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47053 * 299.99187 * 9 7 5 13 13 C 1.34778 * 119.99558 * 83.93231 * 4 3 2 14 14 O 1.21291 * 119.99729 * 179.97438 * 13 4 3 15 15 C 1.50697 * 120.00312 * 359.97438 * 13 4 3 16 16 C 1.53003 * 109.46928 * 180.02562 * 15 13 4 17 17 C 1.50707 * 109.46854 * 179.97438 * 16 15 13 18 18 C 1.33636 * 122.74588 * 124.72787 * 17 16 15 19 19 S 1.76197 * 107.92212 * 179.97438 * 18 17 16 20 20 C 1.70976 * 90.28430 * 0.28003 * 19 18 17 21 21 C 1.50692 * 124.91826 * 179.83520 * 20 19 18 22 22 N 1.29033 * 110.16384 * 359.83781 * 20 19 18 23 23 H 4.40639 * 5.51376 * 180.02562 * 4 1 2 24 24 H 1.09002 * 109.46967 * 257.99390 * 3 2 1 25 25 H 1.08997 * 109.47140 * 137.99204 * 3 2 1 26 26 H 0.97001 * 119.99875 * 180.02562 * 8 7 5 27 27 H 1.09000 * 109.47224 * 60.00477 * 15 13 4 28 28 H 1.08998 * 109.47113 * 300.00144 * 15 13 4 29 29 H 1.08998 * 109.47023 * 299.99809 * 16 15 13 30 30 H 1.09000 * 109.47097 * 60.00009 * 16 15 13 31 31 H 1.07998 * 126.04243 * 0.04559 * 18 17 16 32 32 H 1.09004 * 109.47581 * 269.99609 * 21 20 19 33 33 H 1.08999 * 109.47191 * 30.00419 * 21 20 19 34 34 H 1.09004 * 109.47050 * 150.00220 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3129 -0.4266 5 6 3.4823 -2.2522 0.5096 6 1 4.1258 -3.0752 0.2359 7 6 3.0062 -2.1455 1.8107 8 7 1.9250 -1.4412 2.0590 9 14 3.9034 -3.0032 3.2067 10 1 5.2944 -2.4901 3.2904 11 1 3.1994 -2.7347 4.4863 12 1 3.9298 -4.4662 2.9532 13 6 3.2433 -1.5977 -1.7395 14 8 3.6485 -2.6850 -2.0927 15 6 2.8611 -0.5653 -2.7686 16 6 3.0763 -1.1387 -4.1707 17 6 2.6935 -0.1065 -5.1998 18 6 3.5286 0.3013 -6.1600 19 16 2.6871 1.5025 -7.1365 20 6 1.2987 1.3430 -6.1514 21 6 0.0144 2.1081 -6.3406 22 7 1.5101 0.4727 -5.2225 23 1 -1.0498 -0.0003 -0.0003 24 1 3.0092 0.2146 1.0052 25 1 3.0090 0.7644 -0.6877 26 1 1.5929 -1.3664 2.9674 27 1 3.4801 0.3226 -2.6399 28 1 1.8118 -0.2980 -2.6429 29 1 4.1254 -1.4063 -4.2966 30 1 2.4570 -2.0265 -4.2991 31 1 4.5403 -0.0452 -6.3116 32 1 0.0565 3.0358 -5.7699 33 1 -0.1195 2.3375 -7.3977 34 1 -0.8231 1.5043 -5.9910 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798803097.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:44 Heat of formation + Delta-G solvation = 68.764270 kcal Electronic energy + Delta-G solvation = -18713.356460 eV Core-core repulsion = 15740.213827 eV Total energy + Delta-G solvation = -2973.142634 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.92481 -38.53324 -35.20977 -33.57139 -32.10308 -31.15797 -30.83862 -28.29365 -26.47622 -25.53423 -23.80760 -22.16573 -19.65461 -18.86365 -17.80959 -17.36784 -16.57565 -16.08523 -15.21944 -15.07747 -14.55498 -14.47156 -14.07135 -13.64117 -13.40235 -13.05323 -12.85655 -12.40914 -12.27155 -12.17622 -11.92424 -11.63180 -11.31152 -11.17426 -10.94355 -10.58262 -10.48343 -10.26661 -9.57318 -9.39568 -9.29024 -9.18305 -8.85140 -8.65509 -8.31976 -7.79911 -6.27867 -3.81963 0.73163 1.36278 1.72745 2.86262 3.20342 3.27374 3.30857 3.74533 4.00011 4.07965 4.12820 4.23433 4.87811 5.00363 5.09316 5.23643 5.28278 5.32449 5.41697 5.54605 5.65508 5.72762 5.84152 5.89367 6.11073 6.28150 6.42179 6.53995 6.62059 6.76357 7.08803 7.60805 7.83647 8.11401 8.47486 8.89215 9.18504 9.41172 9.97181 10.72776 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.030393 B = 0.004149 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.031738 B = 6747.712810 C = 7431.984716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.113 4.113 3 C 0.234 3.766 4 N -0.441 5.441 5 C -0.318 4.318 6 H 0.102 0.898 7 C 0.032 3.968 8 N -0.861 5.861 9 Si 0.920 3.080 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.453 3.547 14 O -0.586 6.586 15 C -0.122 4.122 16 C -0.026 4.026 17 C 0.084 3.916 18 C -0.261 4.261 19 S 0.088 5.912 20 C 0.051 3.949 21 C -0.077 4.077 22 N -0.463 5.463 23 H 0.198 0.802 24 H 0.105 0.895 25 H 0.062 0.938 26 H 0.268 0.732 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.177 0.823 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.019 10.190 -13.956 17.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.115 4.115 3 C 0.111 3.889 4 N -0.159 5.159 5 C -0.445 4.445 6 H 0.120 0.880 7 C -0.172 4.172 8 N -0.498 5.498 9 Si 0.746 3.254 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.242 3.758 14 O -0.471 6.471 15 C -0.163 4.163 16 C -0.066 4.066 17 C -0.047 4.047 18 C -0.399 4.399 19 S 0.342 5.658 20 C -0.228 4.228 21 C -0.137 4.137 22 N -0.178 5.178 23 H 0.215 0.785 24 H 0.123 0.877 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.194 0.806 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.073 10.195 -14.442 17.710 hybrid contribution 0.244 -0.966 1.552 1.845 sum -0.830 9.228 -12.890 15.874 Atomic orbital electron populations 1.24226 0.95337 1.02799 1.05356 1.23118 0.94324 0.97775 0.96287 1.18189 0.84383 0.85165 1.01211 1.43681 1.56058 1.11881 1.04323 1.19588 1.28390 1.07842 0.88688 0.87992 1.25291 0.94987 0.97875 0.99078 1.70092 1.17868 1.40686 1.21171 0.86108 0.79547 0.79869 0.79850 1.19944 1.21092 1.19885 1.20099 0.83932 0.88560 0.83234 1.90507 1.51255 1.25201 1.80100 1.21463 1.03343 0.98372 0.93148 1.19943 1.02454 0.94312 0.89918 1.20542 0.87898 0.98868 0.97435 1.26804 1.05937 1.05259 1.01907 1.83790 1.08602 1.39869 1.33561 1.27073 1.00960 0.99610 0.95162 1.20437 0.91234 0.99313 1.02734 1.66117 1.21112 1.08692 1.21871 0.78479 0.87742 0.92030 0.92168 0.90871 0.89239 0.89699 0.89516 0.80588 0.89573 0.90315 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.57 19.25 29.55 0.57 -5.00 16 2 C -0.11 -2.62 10.75 -37.12 -0.40 -3.02 16 3 C 0.23 5.30 4.91 -6.82 -0.03 5.27 16 4 N -0.44 -11.35 2.60 -117.93 -0.31 -11.65 16 5 C -0.32 -8.86 9.28 -14.93 -0.14 -9.00 16 6 H 0.10 2.98 7.42 -52.49 -0.39 2.59 16 7 C 0.03 0.85 4.83 -17.47 -0.08 0.77 16 8 N -0.86 -23.00 9.59 55.50 0.53 -22.47 16 9 Si 0.92 20.68 29.60 -169.99 -5.03 15.64 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 13 C 0.45 11.17 7.56 -10.99 -0.08 11.09 16 14 O -0.59 -16.22 15.65 5.55 0.09 -16.13 16 15 C -0.12 -2.39 4.21 -27.88 -0.12 -2.51 16 16 C -0.03 -0.45 5.00 -27.88 -0.14 -0.59 16 17 C 0.08 1.29 6.08 -84.23 -0.51 0.78 16 18 C -0.26 -3.31 11.07 29.12 0.32 -2.98 16 19 S 0.09 0.94 23.18 -107.50 -2.49 -1.56 16 20 C 0.05 0.62 7.39 -13.46 -0.10 0.53 16 21 C -0.08 -0.65 10.46 36.00 0.38 -0.28 16 22 N -0.46 -7.25 10.34 -8.06 -0.08 -7.34 16 23 H 0.20 3.50 7.80 -54.10 -0.42 3.08 16 24 H 0.10 2.46 6.60 -51.93 -0.34 2.12 16 25 H 0.06 1.18 6.70 -51.93 -0.35 0.83 16 26 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 27 H 0.07 1.29 7.42 -51.93 -0.39 0.90 16 28 H 0.09 1.82 7.42 -51.93 -0.39 1.44 16 29 H 0.08 1.41 7.98 -51.93 -0.41 0.99 16 30 H 0.09 1.63 8.10 -51.93 -0.42 1.21 16 31 H 0.18 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 313.31 15.07 4.72 4.72 Total: -1.00 -32.53 313.31 -6.85 -39.38 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -3.93 Total: 4.36 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -0.34 Total: -4.96 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.14 Total: -41.46 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.09 Total: -16.13 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.64 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.49 Total: -1.56 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.53 -6.85 -39.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798803097.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.144 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds