Wall clock time and date at job start Tue Mar 31 2020 01:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46509 * 109.46920 * 17.99035 * 3 2 1 5 5 C 1.37094 * 119.99856 * 263.92312 * 4 3 2 6 6 H 1.08001 * 119.99933 * 199.75326 * 5 4 3 7 7 C 1.38951 * 120.00278 * 19.76388 * 5 4 3 8 8 N 1.31411 * 119.99988 * 21.73254 * 7 5 4 9 9 Si 1.86797 * 119.99837 * 201.74202 * 7 5 4 10 10 H 1.48499 * 109.47292 * 59.99749 * 9 7 5 11 11 H 1.48504 * 109.46845 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47053 * 299.99187 * 9 7 5 13 13 C 1.34778 * 119.99558 * 83.93231 * 4 3 2 14 14 O 1.21291 * 119.99729 * 179.97438 * 13 4 3 15 15 C 1.50697 * 120.00312 * 359.97438 * 13 4 3 16 16 C 1.53003 * 109.46928 * 180.02562 * 15 13 4 17 17 C 1.50707 * 109.46854 * 179.97438 * 16 15 13 18 18 C 1.33636 * 122.74588 * 124.72787 * 17 16 15 19 19 S 1.76197 * 107.92212 * 179.97438 * 18 17 16 20 20 C 1.70976 * 90.28430 * 0.28003 * 19 18 17 21 21 C 1.50692 * 124.91826 * 179.83520 * 20 19 18 22 22 N 1.29033 * 110.16384 * 359.83781 * 20 19 18 23 23 H 4.40639 * 5.51376 * 180.02562 * 4 1 2 24 24 H 1.09002 * 109.46967 * 257.99390 * 3 2 1 25 25 H 1.08997 * 109.47140 * 137.99204 * 3 2 1 26 26 H 0.97001 * 119.99875 * 180.02562 * 8 7 5 27 27 H 1.09000 * 109.47224 * 60.00477 * 15 13 4 28 28 H 1.08998 * 109.47113 * 300.00144 * 15 13 4 29 29 H 1.08998 * 109.47023 * 299.99809 * 16 15 13 30 30 H 1.09000 * 109.47097 * 60.00009 * 16 15 13 31 31 H 1.07998 * 126.04243 * 0.04559 * 18 17 16 32 32 H 1.09004 * 109.47581 * 269.99609 * 21 20 19 33 33 H 1.08999 * 109.47191 * 30.00419 * 21 20 19 34 34 H 1.09004 * 109.47050 * 150.00220 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3129 -0.4266 5 6 3.4823 -2.2522 0.5096 6 1 4.1258 -3.0752 0.2359 7 6 3.0062 -2.1455 1.8107 8 7 1.9250 -1.4412 2.0590 9 14 3.9034 -3.0032 3.2067 10 1 5.2944 -2.4901 3.2904 11 1 3.1994 -2.7347 4.4863 12 1 3.9298 -4.4662 2.9532 13 6 3.2433 -1.5977 -1.7395 14 8 3.6485 -2.6850 -2.0927 15 6 2.8611 -0.5653 -2.7686 16 6 3.0763 -1.1387 -4.1707 17 6 2.6935 -0.1065 -5.1998 18 6 3.5286 0.3013 -6.1600 19 16 2.6871 1.5025 -7.1365 20 6 1.2987 1.3430 -6.1514 21 6 0.0144 2.1081 -6.3406 22 7 1.5101 0.4727 -5.2225 23 1 -1.0498 -0.0003 -0.0003 24 1 3.0092 0.2146 1.0052 25 1 3.0090 0.7644 -0.6877 26 1 1.5929 -1.3664 2.9674 27 1 3.4801 0.3226 -2.6399 28 1 1.8118 -0.2980 -2.6429 29 1 4.1254 -1.4063 -4.2966 30 1 2.4570 -2.0265 -4.2991 31 1 4.5403 -0.0452 -6.3116 32 1 0.0565 3.0358 -5.7699 33 1 -0.1195 2.3375 -7.3977 34 1 -0.8231 1.5043 -5.9910 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798803097.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:44 Heat of formation + Delta-G solvation = 48.805288 kcal Electronic energy + Delta-G solvation = -18714.221947 eV Core-core repulsion = 15740.213827 eV Total energy + Delta-G solvation = -2974.008120 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.06207 -40.34088 -37.14256 -34.86274 -33.96054 -33.01824 -32.05450 -29.27494 -28.30452 -27.19851 -25.40319 -23.30681 -20.73858 -20.59587 -19.67759 -18.50726 -18.41395 -17.80412 -16.66485 -16.52017 -16.03467 -15.92478 -15.77279 -14.93270 -14.70626 -14.29360 -14.08479 -13.98062 -13.82169 -13.49368 -13.41741 -12.99590 -12.86046 -12.65985 -12.53142 -12.35124 -12.12619 -11.96987 -11.15846 -11.08109 -10.65985 -10.53945 -10.34154 -10.31387 -9.81630 -9.57428 -8.30458 -5.93162 -0.20690 0.47726 0.77336 1.38554 1.42791 1.52741 1.79679 1.89727 2.16042 2.33353 2.39867 3.05424 3.12794 3.25665 3.86472 3.93574 4.03455 4.15979 4.28769 4.39009 4.50159 4.57599 4.68827 4.71269 4.78988 4.91419 4.98583 5.09443 5.12841 5.31054 5.41415 5.48005 6.07337 6.45002 6.86986 7.14376 7.15785 7.42362 7.99439 8.67856 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.030393 B = 0.004149 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.031738 B = 6747.712810 C = 7431.984716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.154 4.154 3 C 0.237 3.763 4 N -0.452 5.452 5 C -0.357 4.357 6 H 0.075 0.925 7 C 0.003 3.997 8 N -0.872 5.872 9 Si 0.984 3.016 10 H -0.265 1.265 11 H -0.273 1.273 12 H -0.280 1.280 13 C 0.441 3.559 14 O -0.627 6.627 15 C -0.103 4.103 16 C -0.017 4.017 17 C 0.057 3.943 18 C -0.264 4.264 19 S 0.161 5.839 20 C 0.037 3.963 21 C -0.078 4.078 22 N -0.506 5.506 23 H 0.231 0.769 24 H 0.091 0.909 25 H 0.094 0.906 26 H 0.272 0.728 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.195 0.805 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.328 12.054 -14.833 19.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.155 4.155 3 C 0.114 3.886 4 N -0.170 5.170 5 C -0.484 4.484 6 H 0.093 0.907 7 C -0.200 4.200 8 N -0.508 5.508 9 Si 0.808 3.192 10 H -0.190 1.190 11 H -0.198 1.198 12 H -0.205 1.205 13 C 0.231 3.769 14 O -0.514 6.514 15 C -0.143 4.143 16 C -0.058 4.058 17 C -0.073 4.073 18 C -0.403 4.403 19 S 0.415 5.585 20 C -0.241 4.241 21 C -0.138 4.138 22 N -0.223 5.223 23 H 0.248 0.752 24 H 0.109 0.891 25 H 0.112 0.888 26 H 0.082 0.918 27 H 0.113 0.887 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.213 0.787 32 H 0.117 0.883 33 H 0.125 0.875 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.401 12.102 -15.326 19.579 hybrid contribution 0.279 -1.496 1.743 2.314 sum -1.122 10.607 -13.583 17.270 Atomic orbital electron populations 1.25095 0.96345 1.01130 1.03802 1.23427 0.95024 0.99299 0.97757 1.18245 0.84618 0.84479 1.01249 1.43903 1.55973 1.12631 1.04523 1.19540 1.29785 1.08730 0.90333 0.90674 1.26009 0.95244 0.98344 1.00443 1.70186 1.18105 1.40778 1.21738 0.85146 0.78796 0.78249 0.77002 1.19006 1.19800 1.20529 1.20995 0.82896 0.89143 0.83828 1.90463 1.52950 1.27208 1.80822 1.21300 1.02916 0.97413 0.92684 1.19727 1.02143 0.94282 0.89628 1.20185 0.89042 0.99801 0.98321 1.27113 1.06617 1.05207 1.01326 1.83518 1.06251 1.37482 1.31219 1.27693 1.02874 0.98850 0.94668 1.20623 0.89289 0.99134 1.04774 1.66083 1.21671 1.10458 1.24050 0.75207 0.89134 0.88775 0.91835 0.88685 0.89958 0.89410 0.92080 0.78748 0.88275 0.87532 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.28 19.25 74.32 1.43 -8.85 16 2 C -0.15 -7.07 10.75 31.13 0.33 -6.74 16 3 C 0.24 10.80 4.91 84.57 0.42 11.22 16 4 N -0.45 -23.94 2.60 -645.40 -1.68 -25.61 16 5 C -0.36 -20.55 9.28 84.04 0.78 -19.77 16 6 H 0.08 4.63 7.42 -2.91 -0.02 4.61 16 7 C 0.00 0.18 4.83 84.93 0.41 0.59 16 8 N -0.87 -46.55 9.59 21.66 0.21 -46.34 16 9 Si 0.98 42.66 29.60 68.60 2.03 44.69 16 10 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 11 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 12 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 13 C 0.44 22.52 7.56 87.66 0.66 23.18 16 14 O -0.63 -36.39 15.65 -3.06 -0.05 -36.44 16 15 C -0.10 -4.07 4.21 29.85 0.13 -3.94 16 16 C -0.02 -0.62 5.00 29.85 0.15 -0.47 16 17 C 0.06 1.74 6.08 41.52 0.25 2.00 16 18 C -0.26 -6.21 11.07 66.78 0.74 -5.47 16 19 S 0.16 2.93 23.18 -56.49 -1.31 1.62 16 20 C 0.04 0.84 7.39 88.52 0.65 1.49 16 21 C -0.08 -1.13 10.46 71.23 0.75 -0.39 16 22 N -0.51 -15.51 10.34 -179.41 -1.86 -17.36 16 23 H 0.23 7.62 7.80 -4.43 -0.03 7.58 16 24 H 0.09 4.33 6.60 -2.39 -0.02 4.31 16 25 H 0.09 3.56 6.70 -2.39 -0.02 3.54 16 26 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 27 H 0.09 3.30 7.42 -2.39 -0.02 3.28 16 28 H 0.08 3.40 7.42 -2.39 -0.02 3.38 16 29 H 0.09 2.99 7.98 -2.39 -0.02 2.97 16 30 H 0.06 2.43 8.10 -2.39 -0.02 2.41 16 31 H 0.20 3.65 8.06 -2.91 -0.02 3.62 16 32 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -72.21 313.31 5.16 -67.05 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 1.11 Total: 19.57 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 6.70 Total: -7.17 kcal Atomic # 7 Polarization: -85.99 SS G_CDS: -3.32 Total: -89.32 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: -0.05 Total: -36.44 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -1.31 Total: 1.62 kcal Total: -72.21 5.16 -67.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798803097.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.854 kcal (2) G-P(sol) polarization free energy of solvation -72.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds