Wall clock time and date at job start Mon Mar 30 2020 23:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47342 * 261.71084 * 3 2 1 5 5 C 1.36659 * 120.00347 * 96.52397 * 4 3 2 6 6 H 1.08005 * 120.00210 * 156.90517 * 5 4 3 7 7 C 1.39178 * 119.99765 * 336.90628 * 5 4 3 8 8 N 1.31276 * 120.00082 * 354.54891 * 7 5 4 9 9 Si 1.86800 * 119.99695 * 174.55170 * 7 5 4 10 10 H 1.48500 * 109.47543 * 59.99896 * 9 7 5 11 11 H 1.48504 * 109.47029 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47037 * 299.99697 * 9 7 5 13 13 C 1.34784 * 119.99913 * 276.52524 * 4 3 2 14 14 O 1.21647 * 120.00318 * 184.86058 * 13 4 3 15 15 C 1.47285 * 119.99548 * 4.86163 * 13 4 3 16 16 C 1.36864 * 126.83741 * 186.75357 * 15 13 4 17 17 C 1.42076 * 103.78002 * 180.02562 * 16 15 13 18 18 C 1.48226 * 126.83295 * 180.02562 * 17 16 15 19 19 O 1.21406 * 120.00340 * 359.97438 * 18 17 16 20 20 O 1.34655 * 120.00152 * 180.02562 * 18 17 16 21 21 C 1.45191 * 117.00371 * 179.97438 * 20 18 17 22 22 N 1.31045 * 106.33289 * 359.97438 * 17 16 15 23 23 O 1.20866 * 111.83015 * 359.70130 * 22 17 16 24 24 H 4.40636 * 5.51472 * 179.97438 * 4 1 2 25 25 H 1.09002 * 109.47016 * 141.70835 * 3 2 1 26 26 H 1.09006 * 109.47122 * 21.70772 * 3 2 1 27 27 H 0.97005 * 120.00037 * 179.97438 * 8 7 5 28 28 H 1.08001 * 128.11001 * 0.02711 * 16 15 13 29 29 H 1.09004 * 109.47199 * 59.99774 * 21 20 18 30 30 H 1.09000 * 109.47373 * 179.97438 * 21 20 18 31 31 H 1.09001 * 109.47706 * 300.00233 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.2000 1.3667 5 6 3.4893 -0.8769 2.1294 6 1 4.1753 -0.7520 2.9542 7 6 2.9669 -2.1348 1.8433 8 7 2.0526 -2.2693 0.9109 9 14 3.5667 -3.6317 2.7862 10 1 3.2895 -3.4489 4.2336 11 1 2.8597 -4.8419 2.2953 12 1 5.0281 -3.7946 2.5787 13 6 3.2333 1.4456 1.8720 14 8 3.7211 1.6185 2.9729 15 6 2.7509 2.5975 1.0911 16 6 2.8966 3.9214 1.4063 17 6 2.2573 4.5972 0.3324 18 6 2.1189 6.0631 0.1617 19 8 2.5793 6.8174 0.9942 20 8 1.4817 6.5582 -0.9162 21 6 1.3832 8.0032 -1.0178 22 7 1.8154 3.6667 -0.4777 23 8 2.0841 2.5582 -0.0780 24 1 -1.0500 0.0002 0.0000 25 1 3.0089 0.8074 -0.6368 26 1 3.0097 -0.9540 -0.3801 27 1 1.6887 -3.1460 0.7113 28 1 3.3834 4.3515 2.2691 29 1 2.3838 8.4346 -1.0454 30 1 0.8486 8.2678 -1.9301 31 1 0.8436 8.3923 -0.1543 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799088200.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:27 Heat of formation + Delta-G solvation = 11.198029 kcal Electronic energy + Delta-G solvation = -21094.130261 eV Core-core repulsion = 17539.905402 eV Total energy + Delta-G solvation = -3554.224859 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.078 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -46.28765 -41.57818 -40.56921 -37.82546 -37.38261 -35.32189 -34.22366 -33.18171 -32.95863 -29.16071 -28.44554 -27.24042 -26.02793 -24.64275 -23.27779 -21.52465 -19.82305 -19.49047 -19.19733 -18.67185 -18.26423 -17.71945 -17.50937 -17.30798 -16.42287 -16.06905 -15.86235 -15.11517 -14.87608 -14.71426 -14.50460 -14.37178 -13.97882 -13.39109 -13.22921 -12.98463 -12.83616 -12.62775 -12.19702 -12.13228 -11.98195 -11.89895 -11.36044 -11.21476 -10.94156 -10.84317 -10.56382 -9.97418 -8.40793 -6.08955 -0.50706 -0.05885 1.12964 1.42030 1.46158 1.53338 1.53488 1.60484 1.96400 2.10007 2.31975 2.44422 2.63019 2.95821 3.03004 3.47896 3.74028 3.83222 3.94517 4.04252 4.21815 4.29651 4.59583 4.64233 4.66516 4.94782 4.98013 5.36055 5.41702 5.86225 6.20050 6.27966 6.64000 6.92213 7.11168 7.17384 7.66692 8.54011 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.037036 B = 0.004546 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.834001 B = 6157.174095 C = 6757.531271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.145 4.145 3 C 0.227 3.773 4 N -0.410 5.410 5 C -0.344 4.344 6 H 0.094 0.906 7 C 0.009 3.991 8 N -0.860 5.860 9 Si 0.999 3.001 10 H -0.276 1.276 11 H -0.271 1.271 12 H -0.262 1.262 13 C 0.495 3.505 14 O -0.596 6.596 15 C -0.044 4.044 16 C -0.130 4.130 17 C -0.022 4.022 18 C 0.564 3.436 19 O -0.500 6.500 20 O -0.348 6.348 21 C 0.026 3.974 22 N -0.309 5.309 23 O 0.146 5.854 24 H 0.232 0.768 25 H 0.086 0.914 26 H 0.118 0.882 27 H 0.282 0.718 28 H 0.199 0.801 29 H 0.073 0.927 30 H 0.139 0.861 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.409 9.679 -6.777 12.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.147 4.147 3 C 0.105 3.895 4 N -0.124 5.124 5 C -0.472 4.472 6 H 0.111 0.889 7 C -0.197 4.197 8 N -0.495 5.495 9 Si 0.822 3.178 10 H -0.202 1.202 11 H -0.195 1.195 12 H -0.187 1.187 13 C 0.283 3.717 14 O -0.483 6.483 15 C -0.109 4.109 16 C -0.154 4.154 17 C -0.177 4.177 18 C 0.406 3.594 19 O -0.387 6.387 20 O -0.263 6.263 21 C -0.066 4.066 22 N -0.007 5.007 23 O 0.064 5.936 24 H 0.248 0.752 25 H 0.103 0.897 26 H 0.136 0.864 27 H 0.092 0.908 28 H 0.216 0.784 29 H 0.092 0.908 30 H 0.157 0.843 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.816 9.980 -7.309 12.686 hybrid contribution 0.312 -0.438 1.184 1.301 sum -2.504 9.542 -6.125 11.612 Atomic orbital electron populations 1.25088 0.96304 1.04776 1.00010 1.23054 0.94528 0.96926 1.00153 1.18609 0.85297 1.03125 0.82480 1.43798 1.51646 1.04523 1.12426 1.19855 1.27092 0.86002 1.14223 0.88862 1.26255 0.94516 1.01447 0.97439 1.69998 1.23960 1.26114 1.29443 0.84897 0.78906 0.76035 0.77983 1.20172 1.19503 1.18688 1.16628 0.87790 0.81722 0.85548 1.90674 1.52221 1.84059 1.21390 1.24474 1.00625 0.97314 0.88501 1.22752 1.02071 0.89723 1.00871 1.22309 1.05940 0.93434 0.96037 1.19231 0.75010 0.85360 0.79818 1.90855 1.46042 1.58626 1.43134 1.86608 1.68849 1.29077 1.41792 1.23806 1.04102 0.73145 1.05516 1.74153 1.15199 0.90560 1.20804 1.85221 1.53625 1.23903 1.30887 0.75164 0.89655 0.86440 0.90782 0.78365 0.90829 0.84271 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.53 19.25 74.32 1.43 -8.09 16 2 C -0.15 -6.26 9.84 31.12 0.31 -5.95 16 3 C 0.23 9.80 4.75 84.57 0.40 10.20 16 4 N -0.41 -20.14 2.59 -649.35 -1.68 -21.82 16 5 C -0.34 -17.85 9.32 84.17 0.78 -17.07 16 6 H 0.09 5.06 7.36 -2.91 -0.02 5.04 16 7 C 0.01 0.45 5.20 85.00 0.44 0.89 16 8 N -0.86 -40.85 8.90 21.70 0.19 -40.65 16 9 Si 1.00 38.40 29.56 68.60 2.03 40.43 16 10 H -0.28 -10.90 7.11 99.48 0.71 -10.20 16 11 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 12 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 13 C 0.49 24.11 7.55 86.62 0.65 24.76 16 14 O -0.60 -32.37 16.60 -4.18 -0.07 -32.44 16 15 C -0.04 -1.80 6.73 24.33 0.16 -1.63 16 16 C -0.13 -4.72 10.78 22.90 0.25 -4.47 16 17 C -0.02 -0.73 7.22 42.87 0.31 -0.42 16 18 C 0.56 17.05 7.99 70.48 0.56 17.61 16 19 O -0.50 -16.11 16.73 20.14 0.34 -15.77 16 20 O -0.35 -8.83 10.57 -55.64 -0.59 -9.42 16 21 C 0.03 0.41 10.56 113.37 1.20 1.60 16 22 N -0.31 -10.98 12.09 -48.95 -0.59 -11.58 16 23 O 0.15 5.53 7.02 65.77 0.46 6.00 16 24 H 0.23 7.06 7.80 -4.42 -0.03 7.03 16 25 H 0.09 3.27 6.08 -2.39 -0.01 3.25 16 26 H 0.12 5.25 6.29 -2.38 -0.01 5.24 16 27 H 0.28 12.61 8.31 -92.70 -0.77 11.84 16 28 H 0.20 6.66 8.06 -2.91 -0.02 6.63 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -61.75 292.88 7.77 -53.98 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 1.18 Total: 13.85 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: 6.50 Total: 17.43 kcal Atomic # 7 Polarization: -71.97 SS G_CDS: -2.08 Total: -74.06 kcal Atomic # 8 Polarization: -51.77 SS G_CDS: 0.14 Total: -51.63 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Total: -61.75 7.77 -53.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799088200.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.174 kcal (2) G-P(sol) polarization free energy of solvation -61.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds