Wall clock time and date at job start Tue Mar 31 2020 00:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99732 * 2 1 4 4 H 1.48496 * 109.47144 * 269.99698 * 3 2 1 5 5 H 1.48498 * 109.47062 * 29.99710 * 3 2 1 6 6 H 1.48496 * 109.46995 * 149.99746 * 3 2 1 7 7 C 1.37874 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99780 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00038 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.46786 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46786 * 180.02562 * 10 9 7 12 12 O 1.20831 * 119.99840 * 359.97438 * 11 10 9 13 13 O 1.34241 * 119.99831 * 180.02562 * 11 10 9 14 14 C 1.35995 * 116.99874 * 185.42461 * 13 11 10 15 15 C 1.38664 * 120.01503 * 261.16656 * 14 13 11 16 16 C 1.38175 * 120.05267 * 179.97438 * 15 14 13 17 17 C 1.38218 * 120.15411 * 0.04722 * 16 15 14 18 18 C 1.38772 * 120.17281 * 0.28625 * 17 16 15 19 19 C 1.38851 * 119.85001 * 359.36403 * 18 17 16 20 20 O 1.36175 * 120.80617 * 180.55157 * 19 18 17 21 21 C 1.43178 * 116.70998 * 342.96753 * 20 19 18 22 22 C 1.53470 * 108.24223 * 46.14401 * 21 20 19 23 23 O 1.36113 * 119.37475 * 179.87855 * 18 17 16 24 24 H 0.96996 * 120.00082 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47037 * 59.99907 * 9 7 2 26 26 H 1.08993 * 109.47199 * 299.99820 * 9 7 2 27 27 H 1.09000 * 109.46990 * 60.00392 * 10 9 7 28 28 H 1.09001 * 109.47337 * 299.99890 * 10 9 7 29 29 H 1.08003 * 119.97264 * 359.96740 * 15 14 13 30 30 H 1.07997 * 119.92448 * 180.02562 * 16 15 14 31 31 H 1.08004 * 119.91838 * 180.02562 * 17 16 15 32 32 H 1.08997 * 109.71031 * 165.82833 * 21 20 19 33 33 H 1.09002 * 109.70995 * 286.45846 * 21 20 19 34 34 H 1.08991 * 109.71265 * 59.99905 * 22 21 20 35 35 H 1.08999 * 109.70672 * 180.58420 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4919 -4.9672 -0.0001 12 8 0.2836 -4.9672 0.0000 13 8 2.1632 -6.1297 0.0003 14 6 1.4273 -7.2676 -0.1149 15 6 1.1083 -8.0047 1.0155 16 6 0.3602 -9.1606 0.8994 17 6 -0.0716 -9.5864 -0.3426 18 6 0.2490 -8.8585 -1.4798 19 6 0.9943 -7.6925 -1.3667 20 8 1.3105 -6.9572 -2.4684 21 6 1.1804 -7.6094 -3.7364 22 6 -0.1681 -8.3417 -3.7639 23 8 -0.1826 -9.2941 -2.6950 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8902 27 1 2.8720 -3.6043 0.8906 28 1 2.8721 -3.6043 -0.8895 29 1 1.4449 -7.6751 1.9873 30 1 0.1126 -9.7329 1.7812 31 1 -0.6565 -10.4903 -0.4289 32 1 1.2129 -6.8689 -4.5356 33 1 1.9909 -8.3266 -3.8658 34 1 -0.9783 -7.6253 -3.6290 35 1 -0.2875 -8.8563 -4.7173 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813087614.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:27 Heat of formation + Delta-G solvation = -128.315460 kcal Electronic energy + Delta-G solvation = -21310.432403 eV Core-core repulsion = 17853.698128 eV Total energy + Delta-G solvation = -3456.734274 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.59515 -40.32309 -37.75589 -37.37892 -36.14101 -33.58902 -31.39570 -31.24745 -29.96962 -28.59169 -26.19584 -24.97962 -23.57790 -21.78404 -21.24620 -20.03091 -18.85449 -17.89325 -17.69119 -17.06547 -16.26541 -15.73446 -15.56649 -15.42434 -15.14269 -14.82203 -14.47948 -14.40878 -14.17881 -13.42242 -12.96097 -12.79681 -12.37132 -12.20329 -12.06725 -11.45066 -11.26599 -11.22913 -10.96958 -10.82495 -10.64800 -10.59248 -10.05968 -9.99225 -9.64945 -9.19046 -8.53045 -8.37955 -8.22038 -6.01613 -4.06666 0.98337 1.16775 2.73458 2.77693 3.07186 3.17584 3.31686 3.37925 3.41029 3.68222 4.06474 4.43480 4.53134 4.62667 4.70326 4.90557 4.94885 5.13348 5.18111 5.28223 5.33835 5.37822 5.75957 5.89902 5.97381 6.11636 6.19222 6.24327 6.40050 6.70355 6.74032 6.92554 7.26557 7.66222 7.72615 7.97594 8.26665 8.43338 9.00294 9.57392 11.09432 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.027769 B = 0.003946 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.091866 B = 7094.899940 C = 7604.201341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.033 3.967 10 C -0.099 4.099 11 C 0.457 3.543 12 O -0.487 6.487 13 O -0.297 6.297 14 C 0.101 3.899 15 C -0.119 4.119 16 C -0.103 4.103 17 C -0.117 4.117 18 C 0.059 3.941 19 C 0.045 3.955 20 O -0.295 6.295 21 C 0.020 3.980 22 C 0.019 3.981 23 O -0.306 6.306 24 H 0.262 0.738 25 H 0.026 0.974 26 H 0.027 0.973 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.124 0.876 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.145 -20.293 -4.446 20.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.004 4.004 10 C -0.136 4.136 11 C 0.301 3.699 12 O -0.370 6.370 13 O -0.213 6.213 14 C 0.059 3.941 15 C -0.137 4.137 16 C -0.121 4.121 17 C -0.135 4.135 18 C 0.014 3.986 19 C -0.001 4.001 20 O -0.209 6.209 21 C -0.055 4.055 22 C -0.057 4.057 23 O -0.221 6.221 24 H 0.072 0.928 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.158 0.842 30 H 0.158 0.842 31 H 0.156 0.844 32 H 0.142 0.858 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.583 -20.151 -4.503 20.708 hybrid contribution 0.300 0.912 -0.335 1.016 sum 1.883 -19.239 -4.838 19.927 Atomic orbital electron populations 1.69996 1.06113 1.26768 1.49917 1.25016 0.94844 0.99324 0.95090 0.86535 0.79780 0.83201 0.78128 1.20612 1.21179 1.19748 1.21144 0.93095 0.90555 1.51842 0.92240 1.19036 0.93206 0.89179 0.98954 1.21803 1.00722 0.86874 1.04227 1.25243 0.88189 0.84948 0.71480 1.90651 1.15741 1.86818 1.43819 1.84738 1.39488 1.13090 1.84025 1.17861 0.97435 0.88710 0.90101 1.21074 0.99077 0.96077 0.97483 1.20745 0.98115 0.96332 0.96947 1.20470 1.02306 1.01250 0.89487 1.18668 0.98188 0.95162 0.86610 1.19125 0.99107 0.93970 0.87875 1.86430 1.83492 1.38339 1.12657 1.23675 0.97476 0.99124 0.85269 1.23678 0.98185 0.93203 0.90590 1.86283 1.81786 1.37952 1.16034 0.92842 0.95577 0.95505 0.88709 0.88678 0.84171 0.84230 0.84438 0.85769 0.90362 0.90123 0.85894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.53 -14.85 9.11 -34.44 -0.31 -15.16 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.89 4.26 -27.88 -0.12 0.78 16 10 C -0.10 -2.09 5.75 -27.88 -0.16 -2.25 16 11 C 0.46 9.69 7.77 36.01 0.28 9.97 16 12 O -0.49 -11.85 15.72 -18.75 -0.29 -12.14 16 13 O -0.30 -5.57 9.78 -29.29 -0.29 -5.86 16 14 C 0.10 1.75 4.96 -39.10 -0.19 1.55 16 15 C -0.12 -1.66 9.98 -39.45 -0.39 -2.05 16 16 C -0.10 -1.17 10.03 -39.61 -0.40 -1.57 16 17 C -0.12 -1.40 9.96 -39.39 -0.39 -1.79 16 18 C 0.06 0.84 6.49 -39.16 -0.25 0.58 16 19 C 0.05 0.75 6.46 -39.03 -0.25 0.50 16 20 O -0.30 -4.84 10.09 -45.12 -0.46 -5.30 16 21 C 0.02 0.22 7.26 37.40 0.27 0.49 16 22 C 0.02 0.19 7.26 37.40 0.27 0.46 16 23 O -0.31 -3.87 10.42 -32.92 -0.34 -4.21 16 24 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 26 H 0.03 0.77 8.10 -51.93 -0.42 0.35 16 27 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 28 H 0.10 1.86 8.14 -51.93 -0.42 1.43 16 29 H 0.14 1.70 8.06 -52.48 -0.42 1.27 16 30 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.14 1.28 8.06 -52.48 -0.42 0.85 16 32 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.12 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 310.20 15.07 4.67 4.67 Total: -1.00 -35.02 310.20 -6.93 -41.95 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -4.19 Total: -2.28 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -1.75 Total: -6.89 kcal Atomic # 7 Polarization: -27.14 SS G_CDS: 0.74 Total: -26.40 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -1.38 Total: -27.51 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.02 -6.93 -41.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813087614.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.367 kcal (2) G-P(sol) polarization free energy of solvation -35.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds