Wall clock time and date at job start Tue Mar 31 2020 00:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99557 * 2 1 4 4 H 1.48497 * 109.47195 * 269.99866 * 3 2 1 5 5 H 1.48506 * 109.46981 * 29.99940 * 3 2 1 6 6 H 1.48500 * 109.47227 * 149.99683 * 3 2 1 7 7 C 1.37878 * 120.00637 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99988 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99803 * 0.02562 * 7 2 1 10 10 O 1.42903 * 109.47275 * 180.02562 * 9 7 2 11 11 C 1.42893 * 114.00009 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46936 * 179.97438 * 11 10 9 13 13 O 1.45195 * 109.47440 * 64.99791 * 12 11 10 14 14 C 1.34707 * 117.00073 * 179.97438 * 13 12 11 15 15 O 1.21463 * 119.99907 * 0.02562 * 14 13 12 16 16 C 1.47745 * 119.99682 * 179.97438 * 14 13 12 17 17 C 1.39794 * 120.06638 * 359.97438 * 16 14 13 18 18 C 1.38088 * 120.19324 * 180.02562 * 17 16 14 19 19 C 1.38036 * 120.33595 * 0.02562 * 18 17 16 20 20 C 1.39941 * 120.12485 * 359.97438 * 19 18 17 21 21 C 1.47186 * 120.09882 * 180.02562 * 20 19 18 22 22 O 1.21256 * 119.99902 * 179.97438 * 21 20 19 23 23 C 1.39290 * 120.06448 * 180.02562 * 16 14 13 24 24 H 0.96994 * 120.00929 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47020 * 59.99668 * 9 7 2 26 26 H 1.09007 * 109.47183 * 299.99967 * 9 7 2 27 27 H 1.08998 * 109.47719 * 59.99446 * 11 10 9 28 28 H 1.09001 * 109.47291 * 299.99795 * 11 10 9 29 29 H 1.08998 * 109.46896 * 304.99159 * 12 11 10 30 30 H 1.09004 * 109.47158 * 185.00214 * 12 11 10 31 31 H 1.07997 * 119.90548 * 0.02562 * 17 16 14 32 32 H 1.08000 * 119.83444 * 179.97438 * 18 17 16 33 33 H 1.07995 * 119.93804 * 180.02562 * 19 18 17 34 34 H 1.07994 * 120.00106 * 359.97438 * 21 20 19 35 35 H 1.07997 * 120.16117 * 0.26002 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4463 2.6527 0.7001 6 1 3.5465 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 8 2.1799 -3.5852 0.0017 11 6 1.5655 -4.8753 0.0013 12 6 2.6485 -5.9560 0.0020 13 8 3.3990 -5.8884 1.2431 14 6 4.3965 -6.7793 1.4039 15 8 4.6333 -7.5900 0.5310 16 6 5.2033 -6.7694 2.6416 17 6 4.9330 -5.8358 3.6464 18 6 5.6857 -5.8238 4.8040 19 6 6.7105 -6.7320 4.9787 20 6 6.9930 -7.6725 3.9817 21 6 8.0855 -8.6409 4.1688 22 8 8.3284 -9.4554 3.3039 23 6 6.2355 -7.6895 2.8092 24 1 -0.4851 0.8399 -0.0004 25 1 0.6249 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8903 27 1 0.9462 -4.9826 -0.8893 28 1 0.9444 -4.9823 0.8906 29 1 3.3226 -5.7954 -0.8394 30 1 2.1827 -6.9374 -0.0880 31 1 4.1331 -5.1218 3.5170 32 1 5.4721 -5.0998 5.5764 33 1 7.2949 -6.7171 5.8868 34 1 8.6708 -8.6261 5.0763 35 1 6.4517 -8.4096 2.0338 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815218619.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:24 Heat of formation + Delta-G solvation = -143.373568 kcal Electronic energy + Delta-G solvation = -20060.272769 eV Core-core repulsion = 16602.885526 eV Total energy + Delta-G solvation = -3457.387243 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.69012 -39.72773 -38.26735 -37.05700 -36.04758 -32.82100 -32.18941 -31.47137 -30.05098 -27.00231 -25.26885 -24.78426 -22.50022 -22.11706 -21.62909 -20.74726 -18.16488 -17.30705 -16.56975 -16.54151 -16.49444 -16.04447 -15.44176 -15.37297 -14.82676 -14.63710 -14.47861 -14.32214 -14.16964 -13.64688 -13.20792 -12.75990 -12.55130 -12.29804 -12.01172 -11.69838 -11.46217 -10.98155 -10.88180 -10.81243 -10.55185 -10.42892 -10.18898 -10.07583 -9.46003 -9.40561 -9.16548 -8.91507 -8.25175 -6.15149 -4.17063 0.15982 0.60225 1.92496 2.54604 2.62669 3.27831 3.32954 3.38121 3.49523 3.82037 4.29172 4.36508 4.45958 4.66543 4.72322 4.75230 4.86771 5.07287 5.18430 5.21476 5.37678 5.42689 5.51909 5.75148 5.82613 5.88051 5.92416 5.97707 6.06945 6.36941 6.48773 7.01531 7.02113 7.35894 7.73767 7.75622 8.08924 8.48397 8.95537 9.47907 10.96373 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.021859 B = 0.003240 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.602361 B = 8639.831235 C = 9475.138814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.516 4.516 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.075 3.925 13 O -0.336 6.336 14 C 0.506 3.494 15 O -0.510 6.510 16 C -0.134 4.134 17 C -0.024 4.024 18 C -0.145 4.145 19 C -0.038 4.038 20 C -0.210 4.210 21 C 0.385 3.615 22 O -0.458 6.458 23 C 0.001 3.999 24 H 0.264 0.736 25 H 0.006 0.994 26 H 0.007 0.993 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.150 0.850 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.110 0.890 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.787 -14.344 11.807 21.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.002 3.998 13 O -0.251 6.251 14 C 0.351 3.649 15 O -0.400 6.400 16 C -0.135 4.135 17 C -0.042 4.042 18 C -0.163 4.163 19 C -0.056 4.056 20 C -0.211 4.211 21 C 0.243 3.757 22 O -0.330 6.330 23 C -0.018 4.018 24 H 0.074 0.926 25 H 0.024 0.976 26 H 0.025 0.975 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.168 0.832 32 H 0.159 0.841 33 H 0.157 0.843 34 H 0.126 0.874 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 10.990 -14.848 11.050 21.525 hybrid contribution -0.166 1.001 -0.119 1.022 sum 10.824 -13.846 10.930 20.697 Atomic orbital electron populations 1.69952 1.06111 1.27245 1.50473 1.24948 0.94982 0.99457 0.95082 0.86329 0.79663 0.82180 0.78284 1.20440 1.21048 1.19590 1.21046 0.94100 0.89284 1.50944 0.91504 1.20242 0.88732 0.83476 0.95527 1.87919 1.35338 1.12609 1.95236 1.22328 0.93180 0.85421 1.00677 1.23273 0.93646 0.98967 0.83936 1.86617 1.43190 1.53516 1.41822 1.21052 0.78959 0.78374 0.86500 1.90828 1.68036 1.38146 1.42969 1.19167 0.99241 1.00812 0.94270 1.21957 0.96821 0.94384 0.91059 1.21223 0.96448 1.00217 0.98391 1.21664 0.94927 0.91646 0.97350 1.20889 1.01857 1.01827 0.96535 1.24053 0.81829 0.79768 0.90051 1.90560 1.64168 1.33879 1.44392 1.21558 0.89739 0.94426 0.96056 0.92597 0.97592 0.97481 0.91789 0.93129 0.90288 0.90229 0.83177 0.84141 0.84312 0.87392 0.83530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 7 C -0.52 -15.02 9.43 -34.44 -0.32 -15.35 16 8 H 0.07 1.94 7.81 -52.48 -0.41 1.53 16 9 C 0.19 5.24 5.69 36.00 0.20 5.44 16 10 O -0.39 -9.31 10.30 -38.80 -0.40 -9.71 16 11 C 0.06 1.10 6.33 37.16 0.24 1.34 16 12 C 0.08 1.19 5.85 37.16 0.22 1.40 16 13 O -0.34 -5.54 9.43 -43.29 -0.41 -5.95 16 14 C 0.51 7.88 7.90 34.62 0.27 8.16 16 15 O -0.51 -8.91 16.13 -19.24 -0.31 -9.22 16 16 C -0.13 -1.70 5.87 -105.04 -0.62 -2.31 16 17 C -0.02 -0.26 9.61 -39.05 -0.38 -0.63 16 18 C -0.14 -1.11 10.01 -39.71 -0.40 -1.51 16 19 C -0.04 -0.24 9.79 -39.02 -0.38 -0.62 16 20 C -0.21 -1.82 5.86 -105.12 -0.62 -2.43 16 21 C 0.38 2.92 11.45 34.36 0.39 3.31 16 22 O -0.46 -5.53 17.16 5.58 0.10 -5.43 16 23 C 0.00 0.01 9.14 -38.68 -0.35 -0.35 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.15 1.64 7.60 -52.49 -0.40 1.24 16 32 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.14 0.36 8.06 -52.49 -0.42 -0.07 16 34 H 0.11 0.32 8.06 -52.49 -0.42 -0.11 16 35 H 0.15 1.89 7.23 -52.49 -0.38 1.51 16 LS Contribution 323.52 15.07 4.88 4.88 Total: -1.00 -35.10 323.52 -6.40 -41.49 By element: Atomic # 1 Polarization: -0.65 SS G_CDS: -4.13 Total: -4.78 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -1.84 Total: -2.03 kcal Atomic # 7 Polarization: -26.53 SS G_CDS: 0.74 Total: -25.79 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -1.02 Total: -30.31 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.10 -6.40 -41.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815218619.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.879 kcal (2) G-P(sol) polarization free energy of solvation -35.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds