Wall clock time and date at job start Tue Mar 31 2020 00:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99557 * 2 1 4 4 H 1.48497 * 109.47195 * 269.99866 * 3 2 1 5 5 H 1.48506 * 109.46981 * 29.99940 * 3 2 1 6 6 H 1.48500 * 109.47227 * 149.99683 * 3 2 1 7 7 C 1.37878 * 120.00637 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99988 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99803 * 0.02562 * 7 2 1 10 10 O 1.42903 * 109.47275 * 180.02562 * 9 7 2 11 11 C 1.42893 * 114.00009 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46936 * 179.97438 * 11 10 9 13 13 O 1.45195 * 109.47440 * 64.99791 * 12 11 10 14 14 C 1.34707 * 117.00073 * 179.97438 * 13 12 11 15 15 O 1.21463 * 119.99907 * 0.02562 * 14 13 12 16 16 C 1.47745 * 119.99682 * 179.97438 * 14 13 12 17 17 C 1.39794 * 120.06638 * 359.97438 * 16 14 13 18 18 C 1.38088 * 120.19324 * 180.02562 * 17 16 14 19 19 C 1.38036 * 120.33595 * 0.02562 * 18 17 16 20 20 C 1.39941 * 120.12485 * 359.97438 * 19 18 17 21 21 C 1.47186 * 120.09882 * 180.02562 * 20 19 18 22 22 O 1.21256 * 119.99902 * 179.97438 * 21 20 19 23 23 C 1.39290 * 120.06448 * 180.02562 * 16 14 13 24 24 H 0.96994 * 120.00929 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47020 * 59.99668 * 9 7 2 26 26 H 1.09007 * 109.47183 * 299.99967 * 9 7 2 27 27 H 1.08998 * 109.47719 * 59.99446 * 11 10 9 28 28 H 1.09001 * 109.47291 * 299.99795 * 11 10 9 29 29 H 1.08998 * 109.46896 * 304.99159 * 12 11 10 30 30 H 1.09004 * 109.47158 * 185.00214 * 12 11 10 31 31 H 1.07997 * 119.90548 * 0.02562 * 17 16 14 32 32 H 1.08000 * 119.83444 * 179.97438 * 18 17 16 33 33 H 1.07995 * 119.93804 * 180.02562 * 19 18 17 34 34 H 1.07994 * 120.00106 * 359.97438 * 21 20 19 35 35 H 1.07997 * 120.16117 * 0.26002 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4463 2.6527 0.7001 6 1 3.5465 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 8 2.1799 -3.5852 0.0017 11 6 1.5655 -4.8753 0.0013 12 6 2.6485 -5.9560 0.0020 13 8 3.3990 -5.8884 1.2431 14 6 4.3965 -6.7793 1.4039 15 8 4.6333 -7.5900 0.5310 16 6 5.2033 -6.7694 2.6416 17 6 4.9330 -5.8358 3.6464 18 6 5.6857 -5.8238 4.8040 19 6 6.7105 -6.7320 4.9787 20 6 6.9930 -7.6725 3.9817 21 6 8.0855 -8.6409 4.1688 22 8 8.3284 -9.4554 3.3039 23 6 6.2355 -7.6895 2.8092 24 1 -0.4851 0.8399 -0.0004 25 1 0.6249 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8903 27 1 0.9462 -4.9826 -0.8893 28 1 0.9444 -4.9823 0.8906 29 1 3.3226 -5.7954 -0.8394 30 1 2.1827 -6.9374 -0.0880 31 1 4.1331 -5.1218 3.5170 32 1 5.4721 -5.0998 5.5764 33 1 7.2949 -6.7171 5.8868 34 1 8.6708 -8.6261 5.0763 35 1 6.4517 -8.4096 2.0338 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815218619.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:22 Heat of formation + Delta-G solvation = -166.297073 kcal Electronic energy + Delta-G solvation = -20061.266807 eV Core-core repulsion = 16602.885526 eV Total energy + Delta-G solvation = -3458.381280 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.78047 -40.58067 -39.11319 -38.67299 -37.49037 -34.96034 -33.05344 -32.20780 -31.54188 -29.05972 -26.09409 -25.68502 -24.55752 -23.50777 -22.40023 -21.74369 -19.13732 -18.73510 -18.33162 -17.97692 -17.25516 -17.10373 -16.95250 -16.43725 -16.31917 -16.18223 -15.38585 -15.31236 -15.22378 -14.84511 -14.53633 -14.28391 -13.78695 -13.48006 -13.26198 -12.98183 -12.93377 -12.71664 -12.57959 -12.41033 -12.03625 -11.82910 -11.72406 -11.29689 -10.91361 -10.84799 -10.29279 -10.20677 -10.14696 -8.33022 -6.45386 -0.56563 -0.21953 1.17483 1.40570 1.43020 1.47404 1.55174 1.64017 2.34034 2.73490 3.00997 3.02335 3.26237 3.43800 3.76739 3.86856 4.01880 4.04118 4.05914 4.21835 4.30673 4.38234 4.49910 4.62147 4.75744 4.82776 4.83931 5.09631 5.16265 5.18443 5.21966 5.31803 5.53398 5.71041 5.93962 6.46456 6.47579 6.54016 6.78009 7.26305 8.79164 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.021859 B = 0.003240 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.602361 B = 8639.831235 C = 9475.138814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.982 3.018 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.264 1.264 7 C -0.551 4.551 8 H 0.060 0.940 9 C 0.208 3.792 10 O -0.409 6.409 11 C 0.055 3.945 12 C 0.077 3.923 13 O -0.348 6.348 14 C 0.504 3.496 15 O -0.540 6.540 16 C -0.161 4.161 17 C -0.036 4.036 18 C -0.139 4.139 19 C -0.007 4.007 20 C -0.216 4.216 21 C 0.395 3.605 22 O -0.511 6.511 23 C -0.019 4.019 24 H 0.272 0.728 25 H -0.009 1.009 26 H -0.008 1.008 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.139 0.861 32 H 0.173 0.827 33 H 0.196 0.804 34 H 0.175 0.825 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.498 -13.492 14.554 23.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.805 3.195 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.188 1.188 7 C -0.588 4.588 8 H 0.078 0.922 9 C 0.133 3.867 10 O -0.330 6.330 11 C -0.021 4.021 12 C 0.004 3.996 13 O -0.264 6.264 14 C 0.351 3.649 15 O -0.432 6.432 16 C -0.162 4.162 17 C -0.054 4.054 18 C -0.156 4.156 19 C -0.024 4.024 20 C -0.217 4.217 21 C 0.257 3.743 22 O -0.386 6.386 23 C -0.038 4.038 24 H 0.080 0.920 25 H 0.009 0.991 26 H 0.010 0.990 27 H 0.102 0.898 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.127 0.873 31 H 0.157 0.843 32 H 0.191 0.809 33 H 0.213 0.787 34 H 0.191 0.809 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 12.693 -14.007 13.810 23.410 hybrid contribution -0.701 0.667 -0.889 1.314 sum 11.991 -13.341 12.921 22.107 Atomic orbital electron populations 1.70050 1.07686 1.28735 1.50357 1.25934 0.95964 1.03299 0.93851 0.85196 0.78435 0.77069 0.78802 1.19468 1.19742 1.18831 1.21377 0.94068 0.90907 1.52471 0.92205 1.19881 0.88540 0.84309 0.93952 1.87866 1.35574 1.14174 1.95348 1.22630 0.94224 0.83200 1.02068 1.23260 0.93163 0.99475 0.83707 1.86611 1.43747 1.54144 1.41939 1.21683 0.78509 0.77443 0.87298 1.90793 1.68866 1.39294 1.44291 1.19103 1.00191 1.02959 0.93924 1.22001 0.97524 0.93892 0.92025 1.21644 0.95706 1.00771 0.97502 1.22236 0.93581 0.88703 0.97888 1.21285 1.01751 1.02854 0.95784 1.24935 0.80851 0.77633 0.90885 1.90567 1.65466 1.35950 1.46653 1.21522 0.90714 0.94253 0.97319 0.91957 0.99088 0.99045 0.89845 0.92195 0.91092 0.87309 0.84300 0.80918 0.78683 0.80928 0.86133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.13 13.29 21.45 0.28 -54.85 16 2 C 0.01 0.47 5.46 84.66 0.46 0.93 16 3 Si 0.98 43.85 29.54 68.60 2.03 45.88 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.55 -32.70 9.43 25.60 0.24 -32.46 16 8 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 9 C 0.21 11.57 5.69 71.23 0.41 11.97 16 10 O -0.41 -20.11 10.30 -145.57 -1.50 -21.60 16 11 C 0.06 2.02 6.33 71.98 0.46 2.48 16 12 C 0.08 2.51 5.85 71.98 0.42 2.93 16 13 O -0.35 -12.06 9.43 -53.51 -0.50 -12.57 16 14 C 0.50 16.73 7.90 70.34 0.56 17.29 16 15 O -0.54 -20.25 16.13 19.96 0.32 -19.92 16 16 C -0.16 -4.26 5.87 -20.13 -0.12 -4.38 16 17 C -0.04 -0.75 9.61 22.61 0.22 -0.54 16 18 C -0.14 -1.65 10.01 22.19 0.22 -1.43 16 19 C -0.01 -0.05 9.79 22.63 0.22 0.17 16 20 C -0.22 -3.24 5.86 -20.18 -0.12 -3.36 16 21 C 0.40 4.84 11.45 70.17 0.80 5.65 16 22 O -0.51 -12.09 17.16 -2.96 -0.05 -12.14 16 23 C -0.02 -0.47 9.14 22.85 0.21 -0.26 16 24 H 0.27 14.90 8.31 -92.71 -0.77 14.12 16 25 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 26 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 27 H 0.08 2.71 8.14 -2.39 -0.02 2.70 16 28 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.11 2.88 8.14 -2.38 -0.02 2.86 16 31 H 0.14 3.14 7.60 -2.91 -0.02 3.12 16 32 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 33 H 0.20 -0.56 8.06 -2.91 -0.02 -0.58 16 34 H 0.17 -0.05 8.06 -2.91 -0.02 -0.07 16 35 H 0.12 3.46 7.23 -2.91 -0.02 3.44 16 Total: -1.00 -80.81 323.52 5.65 -75.16 By element: Atomic # 1 Polarization: -0.04 SS G_CDS: 1.10 Total: 1.06 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 3.98 Total: -1.01 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: 0.28 Total: -54.85 kcal Atomic # 8 Polarization: -64.51 SS G_CDS: -1.73 Total: -66.24 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -80.81 5.65 -75.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815218619.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.138 kcal (2) G-P(sol) polarization free energy of solvation -80.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds