Wall clock time and date at job start Tue Mar 31 2020 00:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 115.56384 * 2 1 4 4 C 1.53001 * 109.47151 * 34.30823 * 3 2 1 5 5 O 1.45196 * 109.46797 * 180.02562 * 4 3 2 6 6 C 1.34234 * 116.99542 * 179.97438 * 5 4 3 7 7 O 1.20827 * 120.00217 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99804 * 180.02562 * 6 5 4 9 9 C 1.53000 * 109.47189 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.47189 * 180.02562 * 9 8 6 11 11 H 1.08001 * 120.00013 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99947 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99962 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00082 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47189 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47411 * 119.99843 * 14 12 10 17 17 H 1.48505 * 109.47392 * 240.00164 * 14 12 10 18 18 C 1.53079 * 117.48813 * 145.70618 * 2 1 3 19 19 C 1.52997 * 59.98332 * 107.48926 * 18 2 1 20 20 F 1.39906 * 117.49737 * 252.49901 * 19 18 2 21 21 Cl 1.80299 * 117.50400 * 107.50110 * 19 18 2 22 22 H 1.08994 * 109.47044 * 205.69479 * 1 2 3 23 23 H 1.09003 * 109.46748 * 325.69048 * 1 2 3 24 24 H 1.08996 * 109.46672 * 85.69055 * 1 2 3 25 25 H 1.08999 * 109.46989 * 154.30515 * 3 2 1 26 26 H 1.08997 * 109.47057 * 274.30653 * 3 2 1 27 27 H 1.09005 * 109.47132 * 300.00129 * 4 3 2 28 28 H 1.08997 * 109.47279 * 59.99965 * 4 3 2 29 29 H 1.08996 * 109.47134 * 299.99877 * 8 6 5 30 30 H 1.09005 * 109.47328 * 59.99808 * 8 6 5 31 31 H 1.09003 * 109.47180 * 299.99613 * 9 8 6 32 32 H 1.08998 * 109.47453 * 59.99677 * 9 8 6 33 33 H 0.97000 * 119.99368 * 179.97438 * 13 12 10 34 34 H 1.08998 * 117.49992 * 359.97438 * 18 2 1 35 35 H 1.09001 * 117.50746 * 214.96539 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1903 1.3802 0.0000 4 6 1.3355 2.3545 0.8131 5 8 1.9618 3.6644 0.8125 6 6 1.3332 4.6406 1.4861 7 8 0.2939 4.4083 2.0569 8 6 1.9232 6.0266 1.5296 9 6 1.0166 6.9413 2.3556 10 6 1.6063 8.3274 2.3985 11 1 2.5346 8.5354 1.8873 12 6 0.9600 9.3304 3.0894 13 7 -0.1713 9.0775 3.7106 14 14 1.6906 11.0488 3.1420 15 1 2.9584 11.0716 2.3690 16 1 0.7305 12.0133 2.5476 17 1 1.9641 11.4276 4.5517 18 6 2.2366 -1.1219 0.7651 19 6 2.2365 -1.1211 -0.7648 20 9 1.4340 -2.0674 -1.4113 21 17 3.7833 -0.7146 -1.5973 22 1 -0.3633 -0.9260 0.4455 23 1 -0.3633 0.8489 0.5793 24 1 -0.3632 0.0772 -1.0247 25 1 3.1824 1.3084 0.4456 26 1 2.2774 1.7413 -1.0247 27 1 0.3432 2.4263 0.3675 28 1 1.2483 1.9934 1.8378 29 1 2.9122 5.9864 1.9860 30 1 2.0067 6.4180 0.5156 31 1 0.0277 6.9815 1.8987 32 1 0.9326 6.5502 3.3695 33 1 -0.6257 9.7832 4.1970 34 1 1.6113 -1.8592 1.2685 35 1 3.1718 -0.8766 1.2685 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822040050.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:36 Heat of formation + Delta-G solvation = -133.019031 kcal Electronic energy + Delta-G solvation = -18837.821568 eV Core-core repulsion = 15390.823272 eV Total energy + Delta-G solvation = -3446.998296 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.087 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.33623 -40.05000 -38.69640 -36.45696 -36.02689 -33.59975 -31.69081 -30.93585 -28.62791 -26.16864 -24.10509 -22.82871 -21.97976 -19.94543 -19.52943 -17.56923 -17.28026 -16.52631 -16.46749 -16.00241 -15.62790 -15.20534 -14.75755 -14.47973 -14.19352 -13.64517 -13.24282 -12.97869 -12.83809 -12.56968 -12.34066 -12.23913 -11.93901 -11.85783 -11.66748 -11.41384 -11.16699 -10.98941 -10.66927 -10.63433 -10.27658 -10.09437 -10.06279 -9.93144 -9.56675 -9.17782 -8.39534 -6.03208 -4.07993 1.09842 2.62036 2.79867 2.94240 3.29835 3.37137 3.40461 3.45466 3.77103 4.03557 4.37980 4.43488 4.79158 4.85330 5.03203 5.06584 5.20383 5.21484 5.30780 5.32430 5.40992 5.55635 5.65616 5.79840 5.85028 6.10529 6.18403 6.62520 6.91046 7.65056 7.71467 7.96350 8.23371 8.39011 8.99386 9.56269 11.07836 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.044524 B = 0.002693 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.728221 B =10396.253453 C =10844.310847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.099 4.099 3 C -0.086 4.086 4 C 0.065 3.935 5 O -0.366 6.366 6 C 0.457 3.543 7 O -0.506 6.506 8 C -0.103 4.103 9 C 0.032 3.968 10 C -0.528 4.528 11 H 0.059 0.941 12 C 0.058 3.942 13 N -0.889 5.889 14 Si 0.895 3.105 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.154 4.154 19 C 0.101 3.899 20 F -0.148 7.148 21 Cl -0.106 7.106 22 H 0.068 0.932 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.261 0.739 34 H 0.122 0.878 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.412 -21.847 -8.476 24.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.100 4.100 3 C -0.123 4.123 4 C -0.009 4.009 5 O -0.285 6.285 6 C 0.301 3.699 7 O -0.392 6.392 8 C -0.141 4.141 9 C -0.005 4.005 10 C -0.566 4.566 11 H 0.078 0.922 12 C -0.144 4.144 13 N -0.528 5.528 14 Si 0.723 3.277 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.192 4.192 19 C 0.057 3.943 20 F -0.128 7.128 21 Cl -0.079 7.079 22 H 0.087 0.913 23 H 0.103 0.897 24 H 0.092 0.908 25 H 0.105 0.895 26 H 0.108 0.892 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.140 0.860 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.043 -21.871 -8.291 23.927 hybrid contribution 0.233 0.587 -0.092 0.638 sum 5.276 -21.284 -8.383 23.476 Atomic orbital electron populations 1.21609 0.89782 1.03889 1.03741 1.22567 0.96870 0.91552 0.99058 1.21101 0.99125 0.89688 1.02435 1.22949 0.96354 0.80802 1.00808 1.86539 1.53246 1.19537 1.69146 1.24778 0.83131 0.87631 0.74353 1.90634 1.23474 1.82864 1.42253 1.21771 1.02170 0.85920 1.04245 1.19025 0.94243 0.92193 0.95007 1.21195 1.08280 0.94226 1.32900 0.92241 1.25027 0.94895 0.99122 0.95332 1.70006 1.16236 1.33153 1.33397 0.86486 0.79172 0.84239 0.77787 1.19633 1.20963 1.20970 1.24489 1.04199 1.00564 0.89910 1.23844 0.85417 0.94902 0.90130 1.92932 1.71949 1.64994 1.82884 1.98782 1.33648 1.93556 1.81960 0.91309 0.89697 0.90812 0.89489 0.89205 0.90848 0.91173 0.88927 0.88917 0.95588 0.95591 0.92900 0.86007 0.85626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 9.13 37.16 0.34 -0.68 16 2 C -0.10 -0.80 2.47 -154.46 -0.38 -1.18 16 3 C -0.09 -0.81 4.83 -26.73 -0.13 -0.93 16 4 C 0.06 0.79 4.47 37.16 0.17 0.96 16 5 O -0.37 -5.75 10.22 -39.27 -0.40 -6.15 16 6 C 0.46 8.77 7.96 36.01 0.29 9.06 16 7 O -0.51 -11.20 15.73 -18.75 -0.29 -11.50 16 8 C -0.10 -2.08 5.75 -27.88 -0.16 -2.24 16 9 C 0.03 0.85 4.26 -27.88 -0.12 0.73 16 10 C -0.53 -14.63 9.11 -34.44 -0.31 -14.95 16 11 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 14 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 15 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 C -0.15 -1.02 9.65 -26.69 -0.26 -1.27 16 19 C 0.10 0.86 4.32 -26.73 -0.12 0.75 16 20 F -0.15 -1.46 17.14 2.25 0.04 -1.42 16 21 Cl -0.11 -0.97 28.43 -51.86 -1.47 -2.44 16 22 H 0.07 0.46 7.90 -51.93 -0.41 0.04 16 23 H 0.08 0.69 5.59 -51.93 -0.29 0.40 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.09 0.77 7.90 -51.93 -0.41 0.36 16 26 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.07 0.89 6.44 -51.93 -0.33 0.55 16 28 H 0.07 0.85 8.13 -51.93 -0.42 0.42 16 29 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 30 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 31 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 32 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.12 0.64 8.05 -51.93 -0.42 0.22 16 35 H 0.13 0.70 8.05 -51.93 -0.42 0.28 16 LS Contribution 319.96 15.07 4.82 4.82 Total: -1.00 -31.76 319.96 -7.15 -38.91 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: -4.78 Total: -4.20 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -0.78 Total: -8.21 kcal Atomic # 7 Polarization: -26.83 SS G_CDS: 0.74 Total: -26.09 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.70 Total: -17.65 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.47 Total: -2.44 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.76 -7.15 -38.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822040050.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.106 kcal (2) G-P(sol) polarization free energy of solvation -31.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds