Wall clock time and date at job start Tue Mar 31 2020 00:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 115.56384 * 2 1 4 4 C 1.53001 * 109.47151 * 34.30823 * 3 2 1 5 5 O 1.45196 * 109.46797 * 180.02562 * 4 3 2 6 6 C 1.34234 * 116.99542 * 179.97438 * 5 4 3 7 7 O 1.20827 * 120.00217 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99804 * 180.02562 * 6 5 4 9 9 C 1.53000 * 109.47189 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.47189 * 180.02562 * 9 8 6 11 11 H 1.08001 * 120.00013 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99947 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99962 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00082 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47189 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47411 * 119.99843 * 14 12 10 17 17 H 1.48505 * 109.47392 * 240.00164 * 14 12 10 18 18 C 1.53079 * 117.48813 * 145.70618 * 2 1 3 19 19 C 1.52997 * 59.98332 * 107.48926 * 18 2 1 20 20 F 1.39906 * 117.49737 * 252.49901 * 19 18 2 21 21 Cl 1.80299 * 117.50400 * 107.50110 * 19 18 2 22 22 H 1.08994 * 109.47044 * 205.69479 * 1 2 3 23 23 H 1.09003 * 109.46748 * 325.69048 * 1 2 3 24 24 H 1.08996 * 109.46672 * 85.69055 * 1 2 3 25 25 H 1.08999 * 109.46989 * 154.30515 * 3 2 1 26 26 H 1.08997 * 109.47057 * 274.30653 * 3 2 1 27 27 H 1.09005 * 109.47132 * 300.00129 * 4 3 2 28 28 H 1.08997 * 109.47279 * 59.99965 * 4 3 2 29 29 H 1.08996 * 109.47134 * 299.99877 * 8 6 5 30 30 H 1.09005 * 109.47328 * 59.99808 * 8 6 5 31 31 H 1.09003 * 109.47180 * 299.99613 * 9 8 6 32 32 H 1.08998 * 109.47453 * 59.99677 * 9 8 6 33 33 H 0.97000 * 119.99368 * 179.97438 * 13 12 10 34 34 H 1.08998 * 117.49992 * 359.97438 * 18 2 1 35 35 H 1.09001 * 117.50746 * 214.96539 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1903 1.3802 0.0000 4 6 1.3355 2.3545 0.8131 5 8 1.9618 3.6644 0.8125 6 6 1.3332 4.6406 1.4861 7 8 0.2939 4.4083 2.0569 8 6 1.9232 6.0266 1.5296 9 6 1.0166 6.9413 2.3556 10 6 1.6063 8.3274 2.3985 11 1 2.5346 8.5354 1.8873 12 6 0.9600 9.3304 3.0894 13 7 -0.1713 9.0775 3.7106 14 14 1.6906 11.0488 3.1420 15 1 2.9584 11.0716 2.3690 16 1 0.7305 12.0133 2.5476 17 1 1.9641 11.4276 4.5517 18 6 2.2366 -1.1219 0.7651 19 6 2.2365 -1.1211 -0.7648 20 9 1.4340 -2.0674 -1.4113 21 17 3.7833 -0.7146 -1.5973 22 1 -0.3633 -0.9260 0.4455 23 1 -0.3633 0.8489 0.5793 24 1 -0.3632 0.0772 -1.0247 25 1 3.1824 1.3084 0.4456 26 1 2.2774 1.7413 -1.0247 27 1 0.3432 2.4263 0.3675 28 1 1.2483 1.9934 1.8378 29 1 2.9122 5.9864 1.9860 30 1 2.0067 6.4180 0.5156 31 1 0.0277 6.9815 1.8987 32 1 0.9326 6.5502 3.3695 33 1 -0.6257 9.7832 4.1970 34 1 1.6113 -1.8592 1.2685 35 1 3.1718 -0.8766 1.2685 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822040050.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:32 Heat of formation + Delta-G solvation = -149.914525 kcal Electronic energy + Delta-G solvation = -18838.554212 eV Core-core repulsion = 15390.823272 eV Total energy + Delta-G solvation = -3447.730940 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.087 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.03739 -41.47832 -39.44446 -37.62680 -36.93070 -35.63159 -33.23651 -32.23734 -29.30985 -28.04063 -25.27662 -23.82222 -23.31965 -21.48405 -20.27886 -19.10299 -18.22168 -18.03971 -17.76093 -17.06541 -16.68422 -16.45843 -16.21191 -15.90512 -14.88791 -14.73653 -14.52480 -14.19387 -14.06896 -13.69400 -13.50402 -13.23094 -13.04891 -12.90634 -12.81477 -12.55732 -12.50913 -12.45289 -12.15888 -11.99364 -11.73167 -11.60911 -11.41908 -11.24348 -11.12741 -10.69831 -10.57547 -8.19245 -6.32608 0.44872 1.26397 1.44358 1.45136 1.58120 1.64285 2.09727 2.43836 2.71668 3.14824 3.17216 3.39212 3.66727 3.88005 3.95332 4.15834 4.25823 4.34947 4.47793 4.50545 4.60969 4.66617 4.72422 4.81404 4.84473 4.90837 5.02594 5.18048 5.41815 5.49768 5.57340 5.82237 6.14707 6.81326 6.88625 7.37688 8.93544 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.044524 B = 0.002693 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.728221 B =10396.253453 C =10844.310847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 C -0.077 4.077 4 C 0.060 3.940 5 O -0.357 6.357 6 C 0.467 3.533 7 O -0.543 6.543 8 C -0.096 4.096 9 C 0.038 3.962 10 C -0.543 4.543 11 H 0.077 0.923 12 C -0.005 4.005 13 N -0.936 5.936 14 Si 0.973 3.027 15 H -0.254 1.254 16 H -0.281 1.281 17 H -0.281 1.281 18 C -0.136 4.136 19 C 0.090 3.910 20 F -0.157 7.157 21 Cl -0.115 7.115 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.115 0.885 31 H -0.010 1.010 32 H -0.009 1.009 33 H 0.263 0.737 34 H 0.139 0.861 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.140 -22.115 -8.994 24.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.105 4.105 3 C -0.114 4.114 4 C -0.014 4.014 5 O -0.274 6.274 6 C 0.312 3.688 7 O -0.433 6.433 8 C -0.133 4.133 9 C 0.000 4.000 10 C -0.580 4.580 11 H 0.095 0.905 12 C -0.202 4.202 13 N -0.576 5.576 14 Si 0.797 3.203 15 H -0.177 1.177 16 H -0.207 1.207 17 H -0.206 1.206 18 C -0.173 4.173 19 C 0.046 3.954 20 F -0.137 7.137 21 Cl -0.088 7.088 22 H 0.099 0.901 23 H 0.096 0.904 24 H 0.089 0.911 25 H 0.114 0.886 26 H 0.106 0.894 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.008 0.992 32 H 0.009 0.991 33 H 0.072 0.928 34 H 0.157 0.843 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.804 -22.164 -8.838 24.812 hybrid contribution -0.329 0.568 0.041 0.658 sum 6.474 -21.596 -8.797 24.201 Atomic orbital electron populations 1.21614 0.89654 1.04208 1.03606 1.22512 0.96980 0.91032 0.99980 1.21036 0.99046 0.89561 1.01772 1.23271 0.96979 0.79382 1.01739 1.86490 1.52694 1.20426 1.67811 1.24445 0.82382 0.88072 0.73911 1.90628 1.25119 1.83535 1.44036 1.21518 1.01577 0.85714 1.04481 1.18805 0.93900 0.93444 0.93823 1.21682 1.08812 0.94909 1.32625 0.90471 1.26089 0.95214 1.04088 0.94843 1.70165 1.18041 1.34790 1.34555 0.85277 0.78846 0.78165 0.77989 1.17699 1.20685 1.20640 1.24671 1.04667 0.99502 0.88466 1.24035 0.85110 0.95056 0.91164 1.92911 1.72249 1.65312 1.83235 1.98781 1.34118 1.93618 1.82315 0.90099 0.90435 0.91064 0.88556 0.89372 0.90866 0.90837 0.86570 0.86687 0.99167 0.99087 0.92778 0.84260 0.84239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 9.13 71.98 0.66 -1.23 16 2 C -0.10 -1.48 2.47 -52.15 -0.13 -1.61 16 3 C -0.08 -1.30 4.83 30.59 0.15 -1.15 16 4 C 0.06 1.39 4.47 71.98 0.32 1.71 16 5 O -0.36 -10.70 10.22 -51.46 -0.53 -11.22 16 6 C 0.47 17.71 7.96 71.24 0.57 18.27 16 7 O -0.54 -24.55 15.73 21.96 0.35 -24.21 16 8 C -0.10 -3.76 5.75 29.85 0.17 -3.58 16 9 C 0.04 2.00 4.26 29.85 0.13 2.13 16 10 C -0.54 -29.98 9.11 25.60 0.23 -29.75 16 11 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 12 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 13 N -0.94 -57.72 13.29 21.45 0.28 -57.44 16 14 Si 0.97 43.37 29.54 68.60 2.03 45.40 16 15 H -0.25 -10.46 7.11 99.48 0.71 -9.75 16 16 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 17 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 18 C -0.14 -1.43 9.65 30.62 0.30 -1.14 16 19 C 0.09 1.38 4.32 30.59 0.13 1.51 16 20 F -0.16 -2.89 17.14 44.97 0.77 -2.11 16 21 Cl -0.11 -1.94 28.43 -2.72 -0.08 -2.01 16 22 H 0.08 0.93 7.90 -2.39 -0.02 0.91 16 23 H 0.08 1.21 5.59 -2.39 -0.01 1.19 16 24 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 25 H 0.10 1.46 7.90 -2.39 -0.02 1.45 16 26 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.07 1.73 6.44 -2.38 -0.02 1.72 16 28 H 0.07 1.69 8.13 -2.39 -0.02 1.67 16 29 H 0.12 4.03 8.14 -2.39 -0.02 4.01 16 30 H 0.12 4.01 8.14 -2.38 -0.02 4.00 16 31 H -0.01 -0.60 8.10 -2.39 -0.02 -0.62 16 32 H -0.01 -0.55 8.10 -2.39 -0.02 -0.57 16 33 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 34 H 0.14 1.02 8.05 -2.39 -0.02 1.00 16 35 H 0.14 1.12 8.05 -2.39 -0.02 1.10 16 Total: -1.00 -69.40 319.96 6.90 -62.50 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: 1.09 Total: 3.72 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: 2.99 Total: -14.62 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: 0.28 Total: -57.44 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -0.18 Total: -35.43 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.77 Total: -2.11 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -0.08 Total: -2.01 kcal Total: -69.40 6.90 -62.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822040050.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.412 kcal (2) G-P(sol) polarization free energy of solvation -69.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds