Wall clock time and date at job start Tue Mar 31 2020 00:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 115.54844 * 2 1 4 4 C 1.52997 * 109.47482 * 34.32853 * 3 2 1 5 5 O 1.45199 * 109.47075 * 179.97438 * 4 3 2 6 6 C 1.34230 * 116.99614 * 179.97438 * 5 4 3 7 7 O 1.20824 * 120.00179 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99717 * 179.97438 * 6 5 4 9 9 C 1.53003 * 109.47116 * 180.02562 * 8 6 5 10 10 C 1.50693 * 109.47172 * 180.02562 * 9 8 6 11 11 H 1.08006 * 120.00258 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00172 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00174 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 119.99921 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.47347 * 89.99468 * 14 12 10 16 16 H 1.48501 * 109.47249 * 209.99861 * 14 12 10 17 17 H 1.48508 * 109.46795 * 329.99871 * 14 12 10 18 18 C 1.52996 * 117.51507 * 145.70165 * 2 1 3 19 19 C 1.52993 * 60.00427 * 107.47793 * 18 2 1 20 20 F 1.39904 * 117.49925 * 107.48140 * 19 18 2 21 21 Cl 1.80295 * 117.50103 * 252.51110 * 19 18 2 22 22 H 1.09007 * 109.46706 * 85.58268 * 1 2 3 23 23 H 1.08997 * 109.47538 * 205.58006 * 1 2 3 24 24 H 1.08997 * 109.47408 * 325.58586 * 1 2 3 25 25 H 1.09002 * 109.47103 * 274.32606 * 3 2 1 26 26 H 1.08998 * 109.46862 * 154.33418 * 3 2 1 27 27 H 1.09002 * 109.47153 * 59.99783 * 4 3 2 28 28 H 1.09001 * 109.46832 * 299.99974 * 4 3 2 29 29 H 1.09000 * 109.47303 * 300.00327 * 8 6 5 30 30 H 1.09003 * 109.46535 * 60.00663 * 8 6 5 31 31 H 1.09000 * 109.47151 * 300.00236 * 9 8 6 32 32 H 1.09003 * 109.46860 * 60.00013 * 9 8 6 33 33 H 0.97004 * 120.00463 * 180.02562 * 13 12 10 34 34 H 1.09003 * 117.49933 * 214.97189 * 18 2 1 35 35 H 1.09000 * 117.50148 * 359.97438 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3803 0.0000 4 6 1.3351 2.3543 0.8134 5 8 1.9617 3.6641 0.8139 6 6 1.3332 4.6400 1.4880 7 8 0.2942 4.4073 2.0591 8 6 1.9241 6.0256 1.5334 9 6 1.0180 6.9397 2.3607 10 6 1.6086 8.3253 2.4055 11 1 2.5372 8.5334 1.8947 12 6 0.9630 9.3278 3.0978 13 7 1.4781 10.5372 3.1366 14 14 -0.6434 8.9681 3.9807 15 1 -0.3573 8.5324 5.3713 16 1 -1.4786 10.1957 4.0086 17 1 -1.3714 7.8902 3.2642 18 6 2.2368 -1.1210 0.7646 19 6 2.2364 -1.1209 -0.7653 20 9 3.4363 -0.8050 -1.4116 21 17 1.2022 -2.3408 -1.5976 22 1 -0.3633 0.0792 -1.0247 23 1 -0.3634 -0.9269 0.4437 24 1 -0.3634 0.8478 0.5808 25 1 2.2766 1.7416 -1.0248 26 1 3.1822 1.3086 0.4451 27 1 1.2483 1.9930 1.8382 28 1 0.3428 2.4259 0.3682 29 1 2.9127 5.9842 1.9906 30 1 2.0086 6.4179 0.5199 31 1 0.0292 6.9811 1.9038 32 1 0.9338 6.5471 3.3741 33 1 1.0241 11.2424 3.6239 34 1 3.1720 -0.8751 1.2677 35 1 1.6119 -1.8585 1.2682 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822040051.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:44 Heat of formation + Delta-G solvation = -129.812380 kcal Electronic energy + Delta-G solvation = -18889.493360 eV Core-core repulsion = 15442.634115 eV Total energy + Delta-G solvation = -3446.859246 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.087 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -48.35025 -40.18471 -38.75481 -36.59285 -36.12218 -33.64861 -31.82033 -31.21995 -28.61469 -26.61153 -24.15628 -22.88488 -21.76021 -19.96087 -19.54608 -17.73633 -17.34967 -16.84618 -16.58704 -16.11951 -15.73045 -15.28231 -14.86268 -14.23336 -14.10086 -13.82550 -13.46099 -13.05756 -12.94307 -12.65666 -12.60927 -12.23708 -12.10321 -11.95758 -11.64049 -11.60779 -11.40949 -11.04620 -10.73806 -10.37700 -10.34988 -10.20336 -10.13707 -9.93705 -9.71821 -9.28020 -8.57679 -6.09007 -4.09073 1.02883 2.57884 2.64423 2.91410 3.29405 3.32538 3.39671 3.48338 3.73618 4.01277 4.32882 4.44325 4.72353 4.80314 4.92525 5.02779 5.10539 5.18380 5.25636 5.26894 5.34427 5.47944 5.56938 5.70850 5.78645 5.96873 5.99963 6.45061 6.74157 7.21035 7.28443 7.68646 8.15961 8.44917 8.93308 9.52623 11.03564 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.048703 B = 0.002742 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.775691 B =10207.385233 C =10565.434597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.099 4.099 3 C -0.088 4.088 4 C 0.066 3.934 5 O -0.364 6.364 6 C 0.459 3.541 7 O -0.511 6.511 8 C -0.096 4.096 9 C -0.002 4.002 10 C -0.528 4.528 11 H 0.076 0.924 12 C 0.071 3.929 13 N -0.900 5.900 14 Si 0.877 3.123 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.262 1.262 18 C -0.154 4.154 19 C 0.102 3.898 20 F -0.146 7.146 21 Cl -0.109 7.109 22 H 0.075 0.925 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.026 0.974 32 H 0.021 0.979 33 H 0.264 0.736 34 H 0.123 0.877 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.586 -26.165 -7.294 27.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.101 4.101 3 C -0.125 4.125 4 C -0.008 4.008 5 O -0.282 6.282 6 C 0.303 3.697 7 O -0.398 6.398 8 C -0.133 4.133 9 C -0.039 4.039 10 C -0.565 4.565 11 H 0.094 0.906 12 C -0.131 4.131 13 N -0.538 5.538 14 Si 0.704 3.296 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.186 1.186 18 C -0.192 4.192 19 C 0.059 3.941 20 F -0.126 7.126 21 Cl -0.082 7.082 22 H 0.093 0.907 23 H 0.089 0.911 24 H 0.100 0.900 25 H 0.107 0.893 26 H 0.104 0.896 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.044 0.956 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.141 0.859 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.191 -26.173 -7.151 27.134 hybrid contribution -0.726 -0.322 0.322 0.856 sum -0.534 -26.495 -6.830 27.367 Atomic orbital electron populations 1.21638 0.89580 1.03858 1.03804 1.22557 0.97208 0.91202 0.99121 1.21063 0.99129 0.89911 1.02421 1.22964 0.96378 0.80626 1.00854 1.86537 1.53102 1.19612 1.68952 1.24748 0.83006 0.87714 0.74246 1.90618 1.23655 1.82983 1.42586 1.21554 1.01925 0.85455 1.04399 1.19482 0.95159 0.94269 0.95039 1.21029 1.09858 0.91969 1.33680 0.90640 1.24958 0.97519 0.94843 0.95809 1.69901 1.39701 1.01714 1.42532 0.86800 0.84149 0.78018 0.80594 1.20166 1.21312 1.18601 1.24482 1.04314 1.00420 0.89943 1.23841 0.83213 0.97000 0.90081 1.92948 1.44446 1.92356 1.82827 1.98772 1.68452 1.58945 1.82034 0.90655 0.91080 0.89951 0.89278 0.89639 0.91093 0.90695 0.88292 0.88252 0.95606 0.96058 0.92579 0.85907 0.85695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 8.53 37.16 0.32 -0.60 16 2 C -0.10 -0.75 2.47 -154.51 -0.38 -1.13 16 3 C -0.09 -0.79 5.42 -26.74 -0.14 -0.93 16 4 C 0.07 0.76 4.47 37.16 0.17 0.92 16 5 O -0.36 -5.44 10.22 -39.26 -0.40 -5.84 16 6 C 0.46 8.27 7.96 36.01 0.29 8.55 16 7 O -0.51 -10.53 15.73 -18.75 -0.29 -10.82 16 8 C -0.10 -1.83 5.75 -27.88 -0.16 -1.99 16 9 C 0.00 -0.05 3.33 -27.88 -0.09 -0.14 16 10 C -0.53 -14.74 9.66 -34.44 -0.33 -15.07 16 11 H 0.08 2.21 7.99 -52.48 -0.42 1.79 16 12 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 13 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 14 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 18 C -0.15 -0.95 9.65 -26.74 -0.26 -1.21 16 19 C 0.10 0.84 4.33 -26.73 -0.12 0.72 16 20 F -0.15 -1.46 17.14 2.25 0.04 -1.42 16 21 Cl -0.11 -0.90 28.43 -51.86 -1.47 -2.37 16 22 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 0.41 7.90 -51.93 -0.41 0.00 16 24 H 0.08 0.61 5.59 -51.93 -0.29 0.32 16 25 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.09 0.73 7.90 -51.93 -0.41 0.32 16 27 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 28 H 0.07 0.84 6.44 -51.93 -0.33 0.51 16 29 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 30 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 31 H 0.03 0.64 7.16 -51.93 -0.37 0.27 16 32 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.12 0.65 8.05 -51.93 -0.42 0.24 16 35 H 0.12 0.58 8.05 -51.93 -0.42 0.16 16 LS Contribution 316.36 15.07 4.77 4.77 Total: -1.00 -31.83 316.36 -6.82 -38.65 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: -4.74 Total: -4.66 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -0.81 Total: -8.93 kcal Atomic # 7 Polarization: -27.43 SS G_CDS: 0.77 Total: -26.66 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.70 Total: -16.66 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.47 Total: -2.37 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.83 -6.82 -38.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822040051.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.163 kcal (2) G-P(sol) polarization free energy of solvation -31.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds