Wall clock time and date at job start Tue Mar 31 2020 00:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 115.54844 * 2 1 4 4 C 1.52997 * 109.47482 * 34.32853 * 3 2 1 5 5 O 1.45199 * 109.47075 * 179.97438 * 4 3 2 6 6 C 1.34230 * 116.99614 * 179.97438 * 5 4 3 7 7 O 1.20824 * 120.00179 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99717 * 179.97438 * 6 5 4 9 9 C 1.53003 * 109.47116 * 180.02562 * 8 6 5 10 10 C 1.50693 * 109.47172 * 180.02562 * 9 8 6 11 11 H 1.08006 * 120.00258 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00172 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00174 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 119.99921 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.47347 * 89.99468 * 14 12 10 16 16 H 1.48501 * 109.47249 * 209.99861 * 14 12 10 17 17 H 1.48508 * 109.46795 * 329.99871 * 14 12 10 18 18 C 1.52996 * 117.51507 * 145.70165 * 2 1 3 19 19 C 1.52993 * 60.00427 * 107.47793 * 18 2 1 20 20 F 1.39904 * 117.49925 * 107.48140 * 19 18 2 21 21 Cl 1.80295 * 117.50103 * 252.51110 * 19 18 2 22 22 H 1.09007 * 109.46706 * 85.58268 * 1 2 3 23 23 H 1.08997 * 109.47538 * 205.58006 * 1 2 3 24 24 H 1.08997 * 109.47408 * 325.58586 * 1 2 3 25 25 H 1.09002 * 109.47103 * 274.32606 * 3 2 1 26 26 H 1.08998 * 109.46862 * 154.33418 * 3 2 1 27 27 H 1.09002 * 109.47153 * 59.99783 * 4 3 2 28 28 H 1.09001 * 109.46832 * 299.99974 * 4 3 2 29 29 H 1.09000 * 109.47303 * 300.00327 * 8 6 5 30 30 H 1.09003 * 109.46535 * 60.00663 * 8 6 5 31 31 H 1.09000 * 109.47151 * 300.00236 * 9 8 6 32 32 H 1.09003 * 109.46860 * 60.00013 * 9 8 6 33 33 H 0.97004 * 120.00463 * 180.02562 * 13 12 10 34 34 H 1.09003 * 117.49933 * 214.97189 * 18 2 1 35 35 H 1.09000 * 117.50148 * 359.97438 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3803 0.0000 4 6 1.3351 2.3543 0.8134 5 8 1.9617 3.6641 0.8139 6 6 1.3332 4.6400 1.4880 7 8 0.2942 4.4073 2.0591 8 6 1.9241 6.0256 1.5334 9 6 1.0180 6.9397 2.3607 10 6 1.6086 8.3253 2.4055 11 1 2.5372 8.5334 1.8947 12 6 0.9630 9.3278 3.0978 13 7 1.4781 10.5372 3.1366 14 14 -0.6434 8.9681 3.9807 15 1 -0.3573 8.5324 5.3713 16 1 -1.4786 10.1957 4.0086 17 1 -1.3714 7.8902 3.2642 18 6 2.2368 -1.1210 0.7646 19 6 2.2364 -1.1209 -0.7653 20 9 3.4363 -0.8050 -1.4116 21 17 1.2022 -2.3408 -1.5976 22 1 -0.3633 0.0792 -1.0247 23 1 -0.3634 -0.9269 0.4437 24 1 -0.3634 0.8478 0.5808 25 1 2.2766 1.7416 -1.0248 26 1 3.1822 1.3086 0.4451 27 1 1.2483 1.9930 1.8382 28 1 0.3428 2.4259 0.3682 29 1 2.9127 5.9842 1.9906 30 1 2.0086 6.4179 0.5199 31 1 0.0292 6.9811 1.9038 32 1 0.9338 6.5471 3.3741 33 1 1.0241 11.2424 3.6239 34 1 3.1720 -0.8751 1.2677 35 1 1.6119 -1.8585 1.2682 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822040051.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:38 Heat of formation + Delta-G solvation = -146.956090 kcal Electronic energy + Delta-G solvation = -18890.236767 eV Core-core repulsion = 15442.634115 eV Total energy + Delta-G solvation = -3447.602653 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.087 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.03384 -41.50996 -39.43427 -37.69007 -36.93426 -35.62014 -33.48730 -32.35647 -29.24279 -28.37831 -25.20114 -23.59692 -23.27922 -21.45405 -20.26312 -19.35482 -18.46428 -18.04045 -17.78718 -17.12148 -16.68953 -16.26102 -16.20732 -15.94414 -14.87278 -14.80106 -14.75443 -14.39082 -14.19377 -13.84220 -13.47379 -13.31591 -12.97766 -12.94097 -12.84132 -12.66520 -12.32532 -12.24084 -12.22189 -12.01347 -11.79522 -11.61622 -11.46511 -11.37968 -11.13514 -10.78088 -10.70208 -8.31002 -6.35374 0.42797 1.22454 1.35587 1.37756 1.51197 1.64068 2.09622 2.35467 2.70732 3.04494 3.16136 3.37447 3.65497 3.89713 3.93126 4.15138 4.22155 4.29945 4.40694 4.41789 4.60865 4.69298 4.74681 4.81210 4.82961 4.88854 4.97140 5.22215 5.27518 5.37935 5.40378 5.60132 6.22129 6.70068 6.81586 7.29876 8.84582 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.048703 B = 0.002742 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.775691 B =10207.385233 C =10565.434597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.102 4.102 3 C -0.081 4.081 4 C 0.061 3.939 5 O -0.359 6.359 6 C 0.471 3.529 7 O -0.539 6.539 8 C -0.093 4.093 9 C 0.002 3.998 10 C -0.532 4.532 11 H 0.050 0.950 12 C 0.013 3.987 13 N -0.943 5.943 14 Si 0.940 3.060 15 H -0.267 1.267 16 H -0.280 1.280 17 H -0.256 1.256 18 C -0.136 4.136 19 C 0.088 3.912 20 F -0.160 7.160 21 Cl -0.113 7.113 22 H 0.072 0.928 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.018 0.982 32 H 0.017 0.983 33 H 0.268 0.732 34 H 0.134 0.866 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.038 -28.090 -6.923 28.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.103 4.103 3 C -0.118 4.118 4 C -0.012 4.012 5 O -0.276 6.276 6 C 0.316 3.684 7 O -0.429 6.429 8 C -0.131 4.131 9 C -0.036 4.036 10 C -0.570 4.570 11 H 0.069 0.931 12 C -0.185 4.185 13 N -0.584 5.584 14 Si 0.764 3.236 15 H -0.192 1.192 16 H -0.206 1.206 17 H -0.180 1.180 18 C -0.173 4.173 19 C 0.044 3.956 20 F -0.140 7.140 21 Cl -0.086 7.086 22 H 0.091 0.909 23 H 0.102 0.898 24 H 0.096 0.904 25 H 0.103 0.897 26 H 0.110 0.890 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.077 0.923 34 H 0.152 0.848 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.337 -28.123 -6.799 28.935 hybrid contribution -0.476 0.230 0.131 0.545 sum -0.814 -27.894 -6.668 28.691 Atomic orbital electron populations 1.21647 0.89132 1.04325 1.03735 1.22510 0.97493 0.90530 0.99803 1.21003 0.99077 0.90054 1.01696 1.23277 0.96957 0.79119 1.01844 1.86492 1.52770 1.20581 1.67803 1.24262 0.82346 0.87858 0.73964 1.90610 1.24824 1.83508 1.43977 1.21343 1.01468 0.85821 1.04419 1.19323 0.95456 0.93130 0.95675 1.21354 1.08983 0.94004 1.32640 0.93141 1.25829 1.01102 0.94678 0.96890 1.70023 1.41546 1.02821 1.43973 0.85799 0.80006 0.78106 0.79640 1.19212 1.20589 1.18042 1.24655 1.04746 0.99479 0.88451 1.24084 0.82870 0.97474 0.91175 1.92918 1.45271 1.92535 1.83261 1.98770 1.68515 1.59005 1.82307 0.90889 0.89802 0.90430 0.89714 0.89050 0.90478 0.90395 0.86825 0.86938 0.96403 0.96452 0.92314 0.84763 0.83819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 8.53 71.98 0.61 -0.95 16 2 C -0.10 -1.33 2.47 -52.18 -0.13 -1.45 16 3 C -0.08 -1.29 5.42 30.59 0.17 -1.13 16 4 C 0.06 1.29 4.47 71.98 0.32 1.61 16 5 O -0.36 -10.03 10.22 -51.42 -0.53 -10.55 16 6 C 0.47 16.17 7.96 71.24 0.57 16.74 16 7 O -0.54 -21.40 15.73 21.97 0.35 -21.06 16 8 C -0.09 -3.43 5.75 29.85 0.17 -3.26 16 9 C 0.00 0.08 3.33 29.85 0.10 0.18 16 10 C -0.53 -29.86 9.66 25.60 0.25 -29.61 16 11 H 0.05 3.01 7.99 -2.91 -0.02 2.98 16 12 C 0.01 0.75 5.47 84.66 0.46 1.21 16 13 N -0.94 -58.17 13.96 21.45 0.30 -57.87 16 14 Si 0.94 45.02 27.47 68.60 1.88 46.91 16 15 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 16 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 17 H -0.26 -11.96 6.54 99.48 0.65 -11.31 16 18 C -0.14 -1.30 9.65 30.59 0.30 -1.01 16 19 C 0.09 1.28 4.33 30.59 0.13 1.41 16 20 F -0.16 -3.00 17.14 44.97 0.77 -2.23 16 21 Cl -0.11 -1.69 28.43 -2.72 -0.08 -1.77 16 22 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 23 H 0.08 0.78 7.90 -2.39 -0.02 0.76 16 24 H 0.08 1.01 5.59 -2.39 -0.01 0.99 16 25 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.09 1.36 7.90 -2.39 -0.02 1.34 16 27 H 0.08 1.56 8.13 -2.39 -0.02 1.54 16 28 H 0.08 1.62 6.44 -2.39 -0.02 1.61 16 29 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 30 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 31 H 0.02 0.86 7.16 -2.39 -0.02 0.84 16 32 H 0.02 0.82 7.53 -2.39 -0.02 0.81 16 33 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 34 H 0.13 1.01 8.05 -2.39 -0.02 0.99 16 35 H 0.14 0.85 8.05 -2.39 -0.02 0.83 16 Total: -1.00 -67.46 316.36 6.68 -60.78 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: 1.03 Total: 2.06 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 2.95 Total: -16.26 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 0.30 Total: -57.87 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.18 Total: -31.61 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.77 Total: -2.23 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.88 Total: 46.91 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -0.08 Total: -1.77 kcal Total: -67.46 6.68 -60.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822040051.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.175 kcal (2) G-P(sol) polarization free energy of solvation -67.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds