Wall clock time and date at job start Mon Mar 30 2020 23:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47229 * 2 1 4 4 C 1.36970 * 119.99977 * 82.75702 * 3 2 1 5 5 H 1.07997 * 119.99792 * 171.27124 * 4 3 2 6 6 C 1.38975 * 120.00196 * 351.26550 * 4 3 2 7 7 N 1.31417 * 119.99960 * 2.79463 * 6 4 3 8 8 Si 1.86802 * 119.99989 * 182.78725 * 6 4 3 9 9 H 1.48490 * 109.46975 * 60.00699 * 8 6 4 10 10 H 1.48503 * 109.46693 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47108 * 300.00249 * 8 6 4 12 12 C 1.34777 * 119.99978 * 262.75793 * 3 2 1 13 13 O 1.21631 * 120.00031 * 184.51102 * 12 3 2 14 14 C 1.47327 * 119.99760 * 4.51387 * 12 3 2 15 15 C 1.37419 * 128.56896 * 307.75653 * 14 12 3 16 16 O 1.33518 * 106.32541 * 180.24289 * 15 14 12 17 17 N 1.20660 * 113.15869 * 359.52044 * 16 15 14 18 18 C 1.29999 * 112.31896 * 0.50527 * 17 16 15 19 19 C 1.50701 * 127.33510 * 179.73112 * 18 17 16 20 20 F 1.39904 * 109.47533 * 269.96112 * 19 18 17 21 21 F 1.39903 * 109.46858 * 29.95879 * 19 18 17 22 22 F 1.39896 * 109.47653 * 149.95448 * 19 18 17 23 23 H 1.08998 * 109.47491 * 299.99962 * 1 2 3 24 24 H 1.09004 * 109.47179 * 60.00326 * 1 2 3 25 25 H 1.08997 * 109.47406 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46992 * 239.99486 * 2 1 3 27 27 H 1.09000 * 109.47083 * 120.00171 * 2 1 3 28 28 H 0.96993 * 119.99701 * 180.02562 * 7 6 4 29 29 H 1.07997 * 126.84207 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1056 2.0767 1.1767 5 1 2.5946 3.0394 1.2000 6 6 1.5648 1.5437 2.3407 7 7 1.0185 0.3487 2.3242 8 14 1.6148 2.5260 3.9289 9 1 0.8802 3.8032 3.7442 10 1 0.9779 1.7409 5.0166 11 1 3.0265 2.8144 4.2883 12 6 2.3817 1.9675 -1.1579 13 8 2.8639 3.0841 -1.1491 14 6 2.1947 1.2558 -2.4343 15 6 2.6097 -0.0079 -2.7793 16 8 2.2112 -0.2030 -4.0386 17 7 1.6155 0.7397 -4.4993 18 6 1.5173 1.7225 -3.6541 19 6 0.8508 3.0558 -3.8761 20 9 1.7837 3.9642 -4.3878 21 9 -0.2012 2.9054 -4.7861 22 9 0.3510 3.5355 -2.6608 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.6407 -0.0231 3.1365 29 1 3.1540 -0.7032 -2.1574 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823547818.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:26 Heat of formation + Delta-G solvation = -108.687587 kcal Electronic energy + Delta-G solvation = -22734.934287 eV Core-core repulsion = 18633.654057 eV Total energy + Delta-G solvation = -4101.280229 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.066 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -51.43363 -48.95902 -48.93882 -46.35167 -40.48378 -37.20493 -35.42961 -34.07786 -32.97463 -31.28944 -28.62701 -27.41759 -25.33619 -23.98266 -23.00886 -21.67259 -19.95551 -19.94781 -19.57284 -19.02715 -18.90200 -18.35884 -17.41719 -16.54223 -16.03592 -15.90744 -15.80214 -15.63734 -15.33756 -15.08257 -15.06701 -15.03624 -14.59549 -14.56789 -13.72239 -13.52873 -13.27393 -13.09146 -12.81333 -12.65338 -12.18752 -12.03759 -11.92005 -11.79853 -10.96336 -10.82374 -10.57282 -9.75492 -8.22794 -5.93328 0.02888 0.18422 1.05520 1.40021 1.45576 1.53175 1.73090 1.91290 2.11715 2.28437 2.49905 2.89613 3.02060 3.10892 3.42880 3.56394 3.81128 4.03827 4.42859 4.50382 4.87466 4.95131 5.13174 5.37609 5.60551 5.89500 6.03318 6.47669 6.70592 7.09164 7.36250 7.89231 8.59355 Molecular weight = 278.07amu Principal moments of inertia in cm(-1) A = 0.024061 B = 0.006754 C = 0.006044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.420690 B = 4144.600902 C = 4631.938098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.108 3.892 3 N -0.425 5.425 4 C -0.333 4.333 5 H 0.078 0.922 6 C 0.005 3.995 7 N -0.865 5.865 8 Si 0.991 3.009 9 H -0.282 1.282 10 H -0.266 1.266 11 H -0.271 1.271 12 C 0.486 3.514 13 O -0.626 6.626 14 C -0.193 4.193 15 C 0.010 3.990 16 O 0.156 5.844 17 N -0.306 5.306 18 C -0.078 4.078 19 C 0.560 3.440 20 F -0.167 7.167 21 F -0.162 7.162 22 F -0.167 7.167 23 H 0.063 0.937 24 H 0.007 0.993 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.115 0.885 28 H 0.276 0.724 29 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.299 -6.225 -6.796 9.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.014 4.014 3 N -0.140 5.140 4 C -0.461 4.461 5 H 0.096 0.904 6 C -0.198 4.198 7 N -0.504 5.504 8 Si 0.815 3.185 9 H -0.208 1.208 10 H -0.190 1.190 11 H -0.196 1.196 12 C 0.274 3.726 13 O -0.515 6.515 14 C -0.202 4.202 15 C -0.070 4.070 16 O 0.078 5.922 17 N 0.001 4.999 18 C -0.239 4.239 19 C 0.504 3.496 20 F -0.148 7.148 21 F -0.144 7.144 22 F -0.148 7.148 23 H 0.081 0.919 24 H 0.026 0.974 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.132 0.868 28 H 0.087 0.913 29 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges -0.660 -5.943 -7.877 9.889 hybrid contribution -0.081 1.304 1.440 1.944 sum -0.741 -4.638 -6.437 7.968 Atomic orbital electron populations 1.22037 0.96388 1.00985 0.99544 1.22182 0.95229 0.81412 1.02543 1.43933 1.52344 1.13155 1.04599 1.19711 1.36948 1.03695 0.85756 0.90413 1.25910 0.94886 0.97375 1.01602 1.70168 1.35953 1.14882 1.29395 0.85021 0.78696 0.77850 0.76954 1.20769 1.18983 1.19649 1.16893 0.86927 0.86260 0.82511 1.90626 1.51913 1.22099 1.86862 1.22205 1.05596 0.96856 0.95527 1.27169 0.99000 0.96151 0.84708 1.84531 1.50461 1.31884 1.25342 1.73585 1.10212 0.95420 1.20729 1.24466 1.08318 0.97113 0.93993 1.16606 0.76257 0.82478 0.74214 1.93231 1.65623 1.68967 1.86983 1.93226 1.58125 1.95744 1.67264 1.93284 1.87650 1.89068 1.44794 0.91865 0.97410 0.91491 0.91263 0.86786 0.91316 0.70028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.17 9.46 71.98 0.68 -4.49 15 2 C 0.11 4.23 5.31 86.38 0.46 4.69 15 3 N -0.42 -20.47 2.64 -639.36 -1.69 -22.16 15 4 C -0.33 -17.67 9.51 84.07 0.80 -16.87 15 5 H 0.08 4.49 7.18 -2.91 -0.02 4.47 15 6 C 0.00 0.23 5.23 84.93 0.44 0.68 15 7 N -0.87 -39.22 7.22 21.67 0.16 -39.06 15 8 Si 0.99 39.49 29.55 68.60 2.03 41.52 15 9 H -0.28 -11.67 7.11 99.48 0.71 -10.96 15 10 H -0.27 -9.82 7.11 99.48 0.71 -9.11 15 11 H -0.27 -10.77 7.11 99.48 0.71 -10.06 15 12 C 0.49 23.47 6.79 86.63 0.59 24.06 15 13 O -0.63 -35.72 16.62 -4.13 -0.07 -35.79 15 14 C -0.19 -7.26 5.53 -18.74 -0.10 -7.36 15 15 C 0.01 0.25 10.30 67.63 0.70 0.95 15 16 O 0.16 3.90 11.06 76.76 0.85 4.75 15 17 N -0.31 -9.59 11.98 -44.75 -0.54 -10.13 15 18 C -0.08 -2.88 6.86 45.17 0.31 -2.57 15 19 C 0.56 21.30 3.57 71.24 0.25 21.55 15 20 F -0.17 -6.36 17.30 44.97 0.78 -5.58 15 21 F -0.16 -5.51 17.28 44.97 0.78 -4.73 15 22 F -0.17 -7.22 16.36 44.97 0.74 -6.48 15 23 H 0.06 2.87 5.89 -2.39 -0.01 2.86 15 24 H 0.01 0.28 8.14 -2.38 -0.02 0.26 15 25 H 0.07 2.21 8.14 -2.39 -0.02 2.19 15 26 H 0.07 2.08 4.13 -2.39 -0.01 2.07 15 27 H 0.11 4.77 5.87 -2.39 -0.01 4.75 15 28 H 0.28 11.76 8.31 -92.71 -0.77 10.99 15 29 H 0.28 4.18 7.18 -2.91 -0.02 4.16 15 Total: -1.00 -63.81 268.73 8.39 -55.41 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: 1.23 Total: 1.61 kcal Atomic # 6 Polarization: 16.51 SS G_CDS: 4.13 Total: 20.64 kcal Atomic # 7 Polarization: -69.28 SS G_CDS: -2.07 Total: -71.34 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: 0.78 Total: -31.04 kcal Atomic # 9 Polarization: -19.09 SS G_CDS: 2.29 Total: -16.80 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -63.81 8.39 -55.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823547818.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.275 kcal (2) G-P(sol) polarization free energy of solvation -63.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds