Wall clock time and date at job start Tue Mar 31 2020 00:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86795 * 120.00319 * 2 1 4 4 H 1.48502 * 109.47629 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47160 * 299.99991 * 3 2 1 6 6 H 1.48507 * 109.47139 * 59.99595 * 3 2 1 7 7 C 1.38901 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99849 * 174.27648 * 7 2 1 9 9 N 1.37203 * 119.99807 * 354.28465 * 7 2 1 10 10 C 1.34775 * 119.99961 * 185.54987 * 9 7 2 11 11 O 1.21275 * 120.00341 * 175.60651 * 10 9 7 12 12 C 1.50700 * 120.00075 * 355.60234 * 10 9 7 13 13 H 1.09007 * 110.84701 * 26.57885 * 12 10 9 14 14 C 1.54251 * 110.79099 * 149.99968 * 12 10 9 15 15 C 1.52341 * 112.59118 * 142.80246 * 14 12 10 16 16 C 1.54258 * 112.58353 * 359.97438 * 15 14 12 17 17 S 1.83957 * 102.58280 * 335.47258 * 16 15 14 18 18 C 1.39430 * 120.00267 * 5.54729 * 9 7 2 19 19 C 1.39062 * 119.69780 * 94.26533 * 18 9 7 20 20 C 1.38375 * 119.09821 * 179.97438 * 19 18 9 21 21 C 1.38828 * 118.49291 * 359.97438 * 20 19 18 22 22 C 1.38139 * 119.31086 * 359.97438 * 21 20 19 23 23 N 1.31878 * 120.85479 * 359.74626 * 22 21 20 24 24 H 0.97005 * 120.00054 * 0.02562 * 1 2 3 25 25 H 1.09003 * 108.87262 * 21.98650 * 14 12 10 26 26 H 1.09000 * 108.75818 * 263.54119 * 14 12 10 27 27 H 1.09003 * 108.86932 * 239.18181 * 15 14 12 28 28 H 1.09001 * 108.86996 * 120.81667 * 15 14 12 29 29 H 1.09005 * 110.78685 * 93.74609 * 16 15 14 30 30 H 1.09004 * 110.78922 * 217.19720 * 16 15 14 31 31 H 1.07998 * 120.45034 * 359.97438 * 19 18 9 32 32 H 1.08006 * 120.75343 * 179.97438 * 20 19 18 33 33 H 1.08006 * 120.34022 * 179.97438 * 21 20 19 34 34 H 1.08003 * 119.57431 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0086 -1.2029 0.0005 8 1 3.0846 -1.2053 -0.0927 9 7 1.3276 -2.3881 0.1194 10 6 2.0064 -3.5469 0.2325 11 8 1.4074 -4.5851 0.4175 12 6 3.5098 -3.5527 0.1291 13 1 3.9230 -2.5894 0.4285 14 6 4.1125 -4.6934 0.9746 15 6 5.3224 -5.3380 0.3102 16 6 5.6605 -4.6990 -1.0525 17 16 4.0447 -3.9922 -1.5756 18 6 -0.0667 -2.3937 0.1232 19 6 -0.7581 -2.6045 -1.0648 20 6 -2.1417 -2.6081 -1.0466 21 6 -2.7887 -2.4005 0.1640 22 6 -2.0381 -2.1986 1.3060 23 7 -0.7202 -2.2058 1.2592 24 1 -0.4850 0.8401 -0.0004 25 1 3.3497 -5.4558 1.1330 26 1 4.4141 -4.2912 1.9417 27 1 5.1194 -6.3985 0.1612 28 1 6.1833 -5.2362 0.9710 29 1 6.4071 -3.9132 -0.9367 30 1 5.9996 -5.4549 -1.7608 31 1 -0.2224 -2.7632 -1.9890 32 1 -2.7055 -2.7688 -1.9537 33 1 -3.8676 -2.3970 0.2124 34 1 -2.5371 -2.0370 2.2501 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826715322.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:59 Heat of formation + Delta-G solvation = 22.744699 kcal Electronic energy + Delta-G solvation = -19695.692819 eV Core-core repulsion = 16720.554627 eV Total energy + Delta-G solvation = -2975.138192 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.70870 -38.02956 -35.49321 -34.77873 -31.76784 -31.28865 -30.18751 -28.76462 -25.39958 -25.11415 -22.50560 -22.41332 -20.48779 -19.25889 -18.09211 -16.92275 -16.24986 -15.50747 -15.29279 -14.93566 -14.80749 -14.29003 -14.03469 -13.61762 -13.31374 -12.98977 -12.51971 -12.32315 -12.22368 -11.90165 -11.60952 -11.42274 -11.28428 -11.15370 -10.98862 -10.67754 -10.45975 -10.07681 -9.79686 -9.52465 -8.90242 -8.76576 -8.49825 -7.98081 -7.92525 -7.27185 -6.36650 -4.09660 1.98856 2.30574 2.45393 2.60737 3.07812 3.14689 3.18619 3.81615 3.95431 4.28952 4.77295 4.95981 4.97008 5.02233 5.26268 5.42213 5.50508 5.60829 5.69676 5.74495 5.80407 5.91463 6.00870 6.11104 6.25232 6.26980 6.46731 6.53172 6.72383 7.09575 7.13182 7.24985 7.38620 7.78063 8.26548 8.88914 9.12943 9.31548 9.62503 10.52904 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.016296 B = 0.007835 C = 0.005991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.818477 B = 3573.071908 C = 4672.750000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.040 3.960 3 Si 0.934 3.066 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.338 4.338 8 H 0.112 0.888 9 N -0.398 5.398 10 C 0.488 3.512 11 O -0.580 6.580 12 C -0.037 4.037 13 H 0.117 0.883 14 C -0.121 4.121 15 C -0.119 4.119 16 C -0.076 4.076 17 S -0.263 6.263 18 C 0.466 3.534 19 C -0.153 4.153 20 C -0.073 4.073 21 C -0.209 4.209 22 C 0.117 3.883 23 N -0.475 5.475 24 H 0.275 0.725 25 H 0.093 0.907 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.790 -3.682 -0.603 6.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.167 4.167 3 Si 0.760 3.240 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.465 4.465 8 H 0.130 0.870 9 N -0.116 5.116 10 C 0.275 3.725 11 O -0.464 6.464 12 C -0.168 4.168 13 H 0.135 0.865 14 C -0.160 4.160 15 C -0.158 4.158 16 C -0.225 4.225 17 S -0.036 6.036 18 C 0.240 3.760 19 C -0.176 4.176 20 C -0.099 4.099 21 C -0.229 4.229 22 C -0.042 4.042 23 N -0.187 5.187 24 H 0.087 0.913 25 H 0.112 0.888 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.118 0.882 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.309 -3.758 -0.858 5.781 hybrid contribution 0.375 1.045 0.256 1.140 sum 4.683 -2.713 -0.602 5.446 Atomic orbital electron populations 1.69482 1.05835 1.27622 1.46363 1.25271 0.95672 1.00012 0.95706 0.85738 0.79470 0.80806 0.77975 1.19032 1.20509 1.20461 1.19868 0.92886 0.81669 1.52056 0.87012 1.41173 1.01985 1.06632 1.61799 1.19037 0.87516 0.83325 0.82583 1.90573 1.69187 1.31955 1.54680 1.23810 0.97254 1.02671 0.93053 0.86546 1.22031 0.97624 0.97759 0.98604 1.21964 0.97969 1.01052 0.94841 1.24148 0.96931 1.02247 0.99134 1.88110 1.21347 1.80195 1.13964 1.17318 0.83856 0.86806 0.88005 1.21590 0.94420 1.03341 0.98242 1.21060 0.93835 0.97672 0.97350 1.21668 0.99723 1.07191 0.94338 1.22079 0.89154 0.95888 0.97121 1.67105 1.09487 1.11760 1.30304 0.91315 0.88826 0.90932 0.90849 0.91164 0.89511 0.88164 0.86806 0.86549 0.86685 0.84747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.53 9.77 55.49 0.54 -21.99 16 2 C 0.04 1.00 5.44 -17.49 -0.10 0.90 16 3 Si 0.93 19.64 29.56 -169.99 -5.02 14.62 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.34 -8.60 9.31 -14.90 -0.14 -8.74 16 8 H 0.11 2.64 5.68 -52.48 -0.30 2.34 16 9 N -0.40 -10.39 2.74 -60.71 -0.17 -10.56 16 10 C 0.49 12.04 6.81 -10.99 -0.07 11.97 16 11 O -0.58 -15.63 15.68 5.56 0.09 -15.55 16 12 C -0.04 -0.74 3.10 -27.23 -0.08 -0.82 16 13 H 0.12 2.27 6.01 -51.92 -0.31 1.96 16 14 C -0.12 -1.99 5.89 -26.41 -0.16 -2.15 16 15 C -0.12 -1.52 6.30 -26.41 -0.17 -1.69 16 16 C -0.08 -0.99 7.46 37.82 0.28 -0.70 16 17 S -0.26 -4.87 22.72 -107.50 -2.44 -7.31 16 18 C 0.47 12.21 2.92 -154.63 -0.45 11.75 16 19 C -0.15 -3.69 9.60 -39.23 -0.38 -4.07 16 20 C -0.07 -1.49 10.17 -39.31 -0.40 -1.88 16 21 C -0.21 -4.04 10.11 -39.40 -0.40 -4.44 16 22 C 0.12 2.52 11.18 -17.57 -0.20 2.32 16 23 N -0.47 -12.24 9.54 -12.34 -0.12 -12.36 16 24 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 25 H 0.09 1.75 6.79 -51.93 -0.35 1.39 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.11 2.70 8.06 -52.49 -0.42 2.27 16 32 H 0.12 1.95 8.06 -52.48 -0.42 1.52 16 33 H 0.12 1.78 8.06 -52.48 -0.42 1.36 16 34 H 0.14 2.43 8.06 -52.48 -0.42 2.01 16 LS Contribution 299.34 15.07 4.51 4.51 Total: -1.00 -31.24 299.34 -8.77 -40.01 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -3.90 Total: 6.17 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -2.26 Total: 2.45 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.26 Total: -44.91 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: 0.09 Total: -15.55 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Atomic # 16 Polarization: -4.87 SS G_CDS: -2.44 Total: -7.31 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.24 -8.77 -40.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826715322.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.756 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds