Wall clock time and date at job start Tue Mar 31 2020 00:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86795 * 120.00319 * 2 1 4 4 H 1.48502 * 109.47629 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47160 * 299.99991 * 3 2 1 6 6 H 1.48507 * 109.47139 * 59.99595 * 3 2 1 7 7 C 1.38901 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99849 * 174.27648 * 7 2 1 9 9 N 1.37203 * 119.99807 * 354.28465 * 7 2 1 10 10 C 1.34775 * 119.99961 * 185.54987 * 9 7 2 11 11 O 1.21275 * 120.00341 * 175.60651 * 10 9 7 12 12 C 1.50700 * 120.00075 * 355.60234 * 10 9 7 13 13 H 1.09007 * 110.84701 * 26.57885 * 12 10 9 14 14 C 1.54251 * 110.79099 * 149.99968 * 12 10 9 15 15 C 1.52341 * 112.59118 * 142.80246 * 14 12 10 16 16 C 1.54258 * 112.58353 * 359.97438 * 15 14 12 17 17 S 1.83957 * 102.58280 * 335.47258 * 16 15 14 18 18 C 1.39430 * 120.00267 * 5.54729 * 9 7 2 19 19 C 1.39062 * 119.69780 * 94.26533 * 18 9 7 20 20 C 1.38375 * 119.09821 * 179.97438 * 19 18 9 21 21 C 1.38828 * 118.49291 * 359.97438 * 20 19 18 22 22 C 1.38139 * 119.31086 * 359.97438 * 21 20 19 23 23 N 1.31878 * 120.85479 * 359.74626 * 22 21 20 24 24 H 0.97005 * 120.00054 * 0.02562 * 1 2 3 25 25 H 1.09003 * 108.87262 * 21.98650 * 14 12 10 26 26 H 1.09000 * 108.75818 * 263.54119 * 14 12 10 27 27 H 1.09003 * 108.86932 * 239.18181 * 15 14 12 28 28 H 1.09001 * 108.86996 * 120.81667 * 15 14 12 29 29 H 1.09005 * 110.78685 * 93.74609 * 16 15 14 30 30 H 1.09004 * 110.78922 * 217.19720 * 16 15 14 31 31 H 1.07998 * 120.45034 * 359.97438 * 19 18 9 32 32 H 1.08006 * 120.75343 * 179.97438 * 20 19 18 33 33 H 1.08006 * 120.34022 * 179.97438 * 21 20 19 34 34 H 1.08003 * 119.57431 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0086 -1.2029 0.0005 8 1 3.0846 -1.2053 -0.0927 9 7 1.3276 -2.3881 0.1194 10 6 2.0064 -3.5469 0.2325 11 8 1.4074 -4.5851 0.4175 12 6 3.5098 -3.5527 0.1291 13 1 3.9230 -2.5894 0.4285 14 6 4.1125 -4.6934 0.9746 15 6 5.3224 -5.3380 0.3102 16 6 5.6605 -4.6990 -1.0525 17 16 4.0447 -3.9922 -1.5756 18 6 -0.0667 -2.3937 0.1232 19 6 -0.7581 -2.6045 -1.0648 20 6 -2.1417 -2.6081 -1.0466 21 6 -2.7887 -2.4005 0.1640 22 6 -2.0381 -2.1986 1.3060 23 7 -0.7202 -2.2058 1.2592 24 1 -0.4850 0.8401 -0.0004 25 1 3.3497 -5.4558 1.1330 26 1 4.4141 -4.2912 1.9417 27 1 5.1194 -6.3985 0.1612 28 1 6.1833 -5.2362 0.9710 29 1 6.4071 -3.9132 -0.9367 30 1 5.9996 -5.4549 -1.7608 31 1 -0.2224 -2.7632 -1.9890 32 1 -2.7055 -2.7688 -1.9537 33 1 -3.8676 -2.3970 0.2124 34 1 -2.5371 -2.0370 2.2501 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826715322.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:59 Heat of formation + Delta-G solvation = 3.904054 kcal Electronic energy + Delta-G solvation = -19696.509810 eV Core-core repulsion = 16720.554627 eV Total energy + Delta-G solvation = -2975.955184 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.50637 -39.78158 -37.02040 -36.39895 -33.67585 -33.01269 -31.74055 -30.28021 -27.07539 -26.67836 -24.12532 -24.12031 -21.93432 -20.96873 -19.78979 -18.65986 -17.69324 -17.20416 -17.07102 -16.60174 -16.41895 -15.77705 -15.58311 -15.17476 -14.91498 -14.61407 -14.14149 -13.81457 -13.80127 -13.38356 -13.30342 -13.01440 -12.79364 -12.62026 -12.41379 -12.28529 -12.08424 -11.65852 -11.33508 -10.91683 -10.75120 -10.51385 -10.33423 -9.81200 -9.68186 -8.73089 -8.22731 -6.04408 0.49958 0.59386 0.76614 1.36135 1.41633 1.42638 1.55476 2.05074 2.18707 2.56439 3.12519 3.23542 3.54515 3.85037 3.94284 4.04697 4.16221 4.17896 4.27618 4.31281 4.49127 4.56403 4.62695 4.73536 4.78987 5.03001 5.04039 5.11055 5.23625 5.32992 5.40641 5.46213 5.62400 6.03254 6.39616 6.97518 7.29049 7.52916 7.75787 8.64058 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.016296 B = 0.007835 C = 0.005991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.818477 B = 3573.071908 C = 4672.750000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C -0.006 4.006 3 Si 1.001 2.999 4 H -0.251 1.251 5 H -0.279 1.279 6 H -0.282 1.282 7 C -0.357 4.357 8 H 0.122 0.878 9 N -0.412 5.412 10 C 0.475 3.525 11 O -0.617 6.617 12 C -0.031 4.031 13 H 0.116 0.884 14 C -0.118 4.118 15 C -0.114 4.114 16 C -0.052 4.052 17 S -0.327 6.327 18 C 0.436 3.564 19 C -0.185 4.185 20 C -0.068 4.068 21 C -0.195 4.195 22 C 0.101 3.899 23 N -0.515 5.515 24 H 0.271 0.729 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.127 0.873 31 H 0.099 0.901 32 H 0.156 0.844 33 H 0.165 0.835 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.807 -3.501 -0.546 6.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.209 4.209 3 Si 0.824 3.176 4 H -0.174 1.174 5 H -0.204 1.204 6 H -0.208 1.208 7 C -0.483 4.483 8 H 0.139 0.861 9 N -0.129 5.129 10 C 0.264 3.736 11 O -0.504 6.504 12 C -0.162 4.162 13 H 0.134 0.866 14 C -0.158 4.158 15 C -0.153 4.153 16 C -0.199 4.199 17 S -0.101 6.101 18 C 0.211 3.789 19 C -0.208 4.208 20 C -0.094 4.094 21 C -0.214 4.214 22 C -0.058 4.058 23 N -0.228 5.228 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.107 0.893 27 H 0.100 0.900 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.145 0.855 31 H 0.118 0.882 32 H 0.173 0.827 33 H 0.183 0.817 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.339 -3.582 -0.809 6.480 hybrid contribution -0.028 0.919 0.241 0.951 sum 5.311 -2.663 -0.568 5.968 Atomic orbital electron populations 1.69677 1.07089 1.27828 1.46881 1.26198 0.96544 1.03023 0.95170 0.84739 0.79041 0.76359 0.77485 1.17374 1.20439 1.20753 1.20234 0.93523 0.81985 1.52550 0.86099 1.41482 1.02584 1.07163 1.61646 1.19868 0.89539 0.82577 0.81585 1.90514 1.70602 1.32973 1.56300 1.23711 0.94011 1.04059 0.94427 0.86569 1.22088 0.98343 0.95956 0.99394 1.21941 0.97351 1.00877 0.95102 1.24374 0.93107 1.03089 0.99339 1.88267 1.26433 1.81260 1.14179 1.17622 0.84198 0.88256 0.88839 1.21695 0.96332 1.05514 0.97245 1.21550 0.92535 0.95791 0.99548 1.22149 1.02021 1.04429 0.92851 1.22767 0.88330 0.95179 0.99482 1.67061 1.11624 1.13407 1.30697 0.91814 0.91690 0.89292 0.90024 0.87335 0.87120 0.85530 0.88237 0.82660 0.81743 0.81732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.23 9.77 21.65 0.21 -47.02 16 2 C -0.01 -0.33 5.44 84.92 0.46 0.14 16 3 Si 1.00 40.54 29.56 68.60 2.03 42.57 16 4 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 5 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.36 -18.70 9.31 84.01 0.78 -17.92 16 8 H 0.12 5.85 5.68 -2.91 -0.02 5.84 16 9 N -0.41 -22.46 2.74 -464.37 -1.27 -23.73 16 10 C 0.48 24.58 6.81 87.66 0.60 25.18 16 11 O -0.62 -35.15 15.68 -3.01 -0.05 -35.19 16 12 C -0.03 -1.27 3.10 30.27 0.09 -1.18 16 13 H 0.12 4.60 6.01 -2.38 -0.01 4.58 16 14 C -0.12 -3.83 5.89 30.80 0.18 -3.65 16 15 C -0.11 -2.56 6.30 30.80 0.19 -2.36 16 16 C -0.05 -1.17 7.46 72.41 0.54 -0.63 16 17 S -0.33 -12.14 22.72 -56.49 -1.28 -13.42 16 18 C 0.44 23.71 2.92 132.90 0.39 24.10 16 19 C -0.19 -9.23 9.60 22.50 0.22 -9.02 16 20 C -0.07 -2.72 10.17 22.44 0.23 -2.49 16 21 C -0.19 -7.14 10.11 22.39 0.23 -6.91 16 22 C 0.10 4.30 11.18 84.66 0.95 5.25 16 23 N -0.52 -27.26 9.54 -192.96 -1.84 -29.10 16 24 H 0.27 13.96 8.31 -92.70 -0.77 13.19 16 25 H 0.06 2.48 6.79 -2.39 -0.02 2.47 16 26 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.11 2.06 8.14 -2.38 -0.02 2.04 16 30 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.10 5.03 8.06 -2.91 -0.02 5.01 16 32 H 0.16 4.83 8.06 -2.91 -0.02 4.80 16 33 H 0.17 4.35 8.06 -2.91 -0.02 4.33 16 34 H 0.17 5.72 8.06 -2.91 -0.02 5.70 16 Total: -1.00 -72.90 299.34 3.77 -69.14 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: 1.11 Total: 26.26 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 4.86 Total: 10.50 kcal Atomic # 7 Polarization: -96.94 SS G_CDS: -2.90 Total: -99.84 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -0.05 Total: -35.19 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Atomic # 16 Polarization: -12.14 SS G_CDS: -1.28 Total: -13.42 kcal Total: -72.90 3.77 -69.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826715322.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.042 kcal (2) G-P(sol) polarization free energy of solvation -72.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds