Wall clock time and date at job start Tue Mar 31 2020 00:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86799 * 119.99959 * 2 1 4 4 H 1.48507 * 109.46924 * 269.99925 * 3 2 1 5 5 H 1.48493 * 109.47138 * 29.99502 * 3 2 1 6 6 H 1.48494 * 109.47479 * 150.00077 * 3 2 1 7 7 C 1.39936 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99649 * 198.09832 * 7 2 1 9 9 C 1.41396 * 120.00273 * 18.09965 * 7 2 1 10 10 C 1.40760 * 120.22207 * 201.59253 * 9 7 2 11 11 C 1.37629 * 119.85824 * 180.02562 * 10 9 7 12 12 C 1.38566 * 120.30226 * 359.72217 * 11 10 9 13 13 C 1.39103 * 120.44203 * 0.55282 * 12 11 10 14 14 O 1.35941 * 119.92994 * 179.71735 * 13 12 11 15 15 C 1.34571 * 117.00419 * 258.47249 * 14 13 12 16 16 O 1.21435 * 119.99923 * 357.14237 * 15 14 13 17 17 O 1.34552 * 120.00112 * 177.14113 * 15 14 13 18 18 C 1.45199 * 117.00082 * 179.97438 * 17 15 14 19 19 H 1.09004 * 110.45358 * 332.60842 * 18 17 15 20 20 C 1.54500 * 110.51322 * 210.00091 * 18 17 15 21 21 C 1.54486 * 104.06296 * 241.35626 * 20 18 17 22 22 O 1.44418 * 104.80066 * 336.01898 * 21 20 18 23 23 C 1.44426 * 105.27830 * 40.51098 * 22 21 20 24 24 C 1.38123 * 120.13770 * 359.45559 * 13 12 11 25 25 H 0.96991 * 120.00355 * 0.02562 * 1 2 3 26 26 H 1.08006 * 120.06953 * 0.04385 * 10 9 7 27 27 H 1.08000 * 119.84891 * 180.02562 * 11 10 9 28 28 H 1.08000 * 119.77844 * 180.30076 * 12 11 10 29 29 H 1.09003 * 110.51127 * 359.97438 * 20 18 17 30 30 H 1.08994 * 110.51480 * 122.70972 * 20 18 17 31 31 H 1.08999 * 110.37292 * 94.85004 * 21 20 18 32 32 H 1.08999 * 110.36886 * 217.18693 * 21 20 18 33 33 H 1.09000 * 110.37446 * 200.65504 * 23 22 21 34 34 H 1.09006 * 110.37075 * 78.31895 * 23 22 21 35 35 H 1.08007 * 120.15205 * 180.25075 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4002 5 1 1.4397 2.6526 0.6999 6 1 3.5398 1.4403 0.7000 7 6 2.0080 -1.2119 0.0005 8 1 3.0480 -1.2348 0.2911 9 6 1.3535 -2.4063 -0.3793 10 6 1.8604 -3.6535 0.0317 11 6 1.2177 -4.8115 -0.3428 12 6 0.0705 -4.7550 -1.1180 13 6 -0.4381 -3.5296 -1.5359 14 8 -1.5610 -3.4867 -2.3010 15 6 -1.3936 -3.2857 -3.6210 16 8 -0.2809 -3.1005 -4.0707 17 8 -2.4592 -3.2899 -4.4426 18 6 -2.2040 -3.0660 -5.8543 19 1 -1.3012 -2.4701 -5.9884 20 6 -3.4139 -2.3730 -6.5199 21 6 -3.8816 -3.3823 -7.5919 22 8 -2.7135 -4.1805 -7.8818 23 6 -2.0837 -4.4119 -6.6028 24 6 0.1924 -2.3562 -1.1708 25 1 -0.4850 0.8399 -0.0004 26 1 2.7516 -3.7016 0.6400 27 1 1.6065 -5.7683 -0.0269 28 1 -0.4298 -5.6688 -1.4029 29 1 -4.2038 -2.1989 -5.7893 30 1 -3.1089 -1.4357 -6.9852 31 1 -4.6818 -4.0096 -7.1990 32 1 -4.2146 -2.8576 -8.4874 33 1 -1.0356 -4.6783 -6.7386 34 1 -2.6082 -5.1972 -6.0582 35 1 -0.2046 -1.4044 -1.4918 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826738033.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:31 Heat of formation + Delta-G solvation = -144.848051 kcal Electronic energy + Delta-G solvation = -21186.812970 eV Core-core repulsion = 17729.361789 eV Total energy + Delta-G solvation = -3457.451181 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.86341 -39.66829 -38.15425 -36.68839 -35.57724 -33.72122 -31.73300 -29.84252 -29.26411 -28.79341 -25.49881 -24.02302 -23.01649 -21.37308 -21.13808 -20.39253 -18.81333 -17.90237 -17.02603 -16.67827 -16.42094 -15.82479 -15.38175 -15.29173 -14.81725 -14.60030 -14.03368 -13.52208 -13.23755 -12.93932 -12.69170 -12.62039 -12.31759 -11.75497 -11.70333 -11.40548 -11.16068 -11.12878 -11.01463 -10.85779 -10.65977 -10.54010 -10.41940 -10.06813 -9.98926 -9.59180 -9.27694 -7.65201 -7.58396 -6.90550 -4.51881 1.65304 2.65081 2.77972 2.88890 3.00991 3.04560 3.12261 3.70002 3.83351 4.21272 4.35256 4.46462 4.60048 4.68927 4.95332 5.05848 5.38977 5.44160 5.47973 5.51566 5.57567 5.64524 6.06639 6.17194 6.29680 6.45435 6.61868 6.85417 6.95205 6.96822 7.12321 7.42641 7.61611 7.75338 7.83943 8.01157 8.31554 8.58829 8.70789 8.78123 10.02473 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.020105 B = 0.004591 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.360973 B = 6097.809203 C = 7055.282830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.452 4.452 8 H 0.084 0.916 9 C 0.113 3.887 10 C -0.219 4.219 11 C -0.080 4.080 12 C -0.240 4.240 13 C 0.089 3.911 14 O -0.260 6.260 15 C 0.588 3.412 16 O -0.530 6.530 17 O -0.324 6.324 18 C 0.067 3.933 19 H 0.109 0.891 20 C -0.155 4.155 21 C 0.045 3.955 22 O -0.367 6.367 23 C 0.031 3.969 24 C -0.148 4.148 25 H 0.284 0.716 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.418 -2.464 -9.829 11.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.146 4.146 3 Si 0.737 3.263 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.481 4.481 8 H 0.103 0.897 9 C 0.111 3.889 10 C -0.239 4.239 11 C -0.098 4.098 12 C -0.260 4.260 13 C 0.049 3.951 14 O -0.175 6.175 15 C 0.398 3.602 16 O -0.427 6.427 17 O -0.243 6.243 18 C 0.012 3.988 19 H 0.127 0.873 20 C -0.193 4.193 21 C -0.032 4.032 22 O -0.286 6.286 23 C -0.046 4.046 24 C -0.168 4.168 25 H 0.095 0.905 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.116 0.884 33 H 0.125 0.875 34 H 0.093 0.907 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.445 -2.339 -10.070 12.182 hybrid contribution 0.286 0.882 0.238 0.957 sum -6.159 -1.458 -9.832 11.693 Atomic orbital electron populations 1.69788 1.07750 1.29699 1.33959 1.26006 0.94792 1.01776 0.91990 0.86222 0.80485 0.80066 0.79521 1.19099 1.20114 1.18346 1.19647 0.98478 0.91008 1.38964 0.89748 1.17433 0.90500 0.92572 0.88434 1.21083 1.03407 0.92497 1.06920 1.20361 0.94489 0.97083 0.97908 1.20265 1.00358 0.94482 1.10868 1.18378 0.87641 0.94765 0.94315 1.84370 1.36359 1.83202 1.13591 1.20970 0.82013 0.74236 0.82990 1.91076 1.24377 1.50627 1.76619 1.86327 1.34256 1.84707 1.18975 1.24259 1.00976 0.98036 0.75560 0.87303 1.23093 0.97953 0.99628 0.98600 1.23460 0.89001 0.92148 0.98564 1.89178 1.39874 1.72585 1.26968 1.23851 1.00198 0.96040 0.84522 1.21601 0.97755 0.96220 1.01204 0.90481 0.88154 0.88165 0.88440 0.88328 0.88754 0.91533 0.88378 0.87531 0.90669 0.85079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.20 10.78 55.55 0.60 -19.60 16 2 C 0.07 1.81 5.16 -17.34 -0.09 1.72 16 3 Si 0.91 18.39 29.60 -169.99 -5.03 13.36 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.45 -11.82 9.06 -37.75 -0.34 -12.16 16 8 H 0.08 2.09 7.91 -52.48 -0.42 1.67 16 9 C 0.11 3.03 5.60 -106.85 -0.60 2.43 16 10 C -0.22 -5.30 9.79 -38.85 -0.38 -5.68 16 11 C -0.08 -1.79 10.02 -39.68 -0.40 -2.18 16 12 C -0.24 -5.57 9.99 -39.14 -0.39 -5.96 16 13 C 0.09 2.23 5.07 -39.30 -0.20 2.03 16 14 O -0.26 -6.02 10.06 -32.38 -0.33 -6.35 16 15 C 0.59 12.43 8.83 101.05 0.89 13.32 16 16 O -0.53 -12.28 15.19 -27.41 -0.42 -12.70 16 17 O -0.32 -5.53 9.92 -48.01 -0.48 -6.01 16 18 C 0.07 0.91 3.49 -25.17 -0.09 0.82 16 19 H 0.11 1.59 7.14 -51.93 -0.37 1.22 16 20 C -0.16 -1.55 6.90 -25.16 -0.17 -1.72 16 21 C 0.04 0.41 7.63 37.94 0.29 0.70 16 22 O -0.37 -4.44 11.65 -35.23 -0.41 -4.85 16 23 C 0.03 0.39 7.39 37.93 0.28 0.67 16 24 C -0.15 -4.00 8.36 -38.73 -0.32 -4.32 16 25 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 26 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 27 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 28 H 0.10 2.03 8.06 -52.49 -0.42 1.60 16 29 H 0.10 0.94 8.00 -51.93 -0.42 0.53 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 35 H 0.13 3.70 5.95 -52.48 -0.31 3.38 16 LS Contribution 307.95 15.07 4.64 4.64 Total: -1.00 -29.54 307.95 -6.97 -36.50 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -4.03 Total: 5.34 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -1.52 Total: -10.34 kcal Atomic # 7 Polarization: -20.20 SS G_CDS: 0.60 Total: -19.60 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -1.63 Total: -29.91 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.54 -6.97 -36.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826738033.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.344 kcal (2) G-P(sol) polarization free energy of solvation -29.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds