Wall clock time and date at job start Tue Mar 31 2020 00:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86799 * 119.99959 * 2 1 4 4 H 1.48507 * 109.46924 * 269.99925 * 3 2 1 5 5 H 1.48493 * 109.47138 * 29.99502 * 3 2 1 6 6 H 1.48494 * 109.47479 * 150.00077 * 3 2 1 7 7 C 1.39936 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99649 * 198.09832 * 7 2 1 9 9 C 1.41396 * 120.00273 * 18.09965 * 7 2 1 10 10 C 1.40760 * 120.22207 * 201.59253 * 9 7 2 11 11 C 1.37629 * 119.85824 * 180.02562 * 10 9 7 12 12 C 1.38566 * 120.30226 * 359.72217 * 11 10 9 13 13 C 1.39103 * 120.44203 * 0.55282 * 12 11 10 14 14 O 1.35941 * 119.92994 * 179.71735 * 13 12 11 15 15 C 1.34571 * 117.00419 * 258.47249 * 14 13 12 16 16 O 1.21435 * 119.99923 * 357.14237 * 15 14 13 17 17 O 1.34552 * 120.00112 * 177.14113 * 15 14 13 18 18 C 1.45199 * 117.00082 * 179.97438 * 17 15 14 19 19 H 1.09004 * 110.45358 * 332.60842 * 18 17 15 20 20 C 1.54500 * 110.51322 * 210.00091 * 18 17 15 21 21 C 1.54486 * 104.06296 * 241.35626 * 20 18 17 22 22 O 1.44418 * 104.80066 * 336.01898 * 21 20 18 23 23 C 1.44426 * 105.27830 * 40.51098 * 22 21 20 24 24 C 1.38123 * 120.13770 * 359.45559 * 13 12 11 25 25 H 0.96991 * 120.00355 * 0.02562 * 1 2 3 26 26 H 1.08006 * 120.06953 * 0.04385 * 10 9 7 27 27 H 1.08000 * 119.84891 * 180.02562 * 11 10 9 28 28 H 1.08000 * 119.77844 * 180.30076 * 12 11 10 29 29 H 1.09003 * 110.51127 * 359.97438 * 20 18 17 30 30 H 1.08994 * 110.51480 * 122.70972 * 20 18 17 31 31 H 1.08999 * 110.37292 * 94.85004 * 21 20 18 32 32 H 1.08999 * 110.36886 * 217.18693 * 21 20 18 33 33 H 1.09000 * 110.37446 * 200.65504 * 23 22 21 34 34 H 1.09006 * 110.37075 * 78.31895 * 23 22 21 35 35 H 1.08007 * 120.15205 * 180.25075 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4002 5 1 1.4397 2.6526 0.6999 6 1 3.5398 1.4403 0.7000 7 6 2.0080 -1.2119 0.0005 8 1 3.0480 -1.2348 0.2911 9 6 1.3535 -2.4063 -0.3793 10 6 1.8604 -3.6535 0.0317 11 6 1.2177 -4.8115 -0.3428 12 6 0.0705 -4.7550 -1.1180 13 6 -0.4381 -3.5296 -1.5359 14 8 -1.5610 -3.4867 -2.3010 15 6 -1.3936 -3.2857 -3.6210 16 8 -0.2809 -3.1005 -4.0707 17 8 -2.4592 -3.2899 -4.4426 18 6 -2.2040 -3.0660 -5.8543 19 1 -1.3012 -2.4701 -5.9884 20 6 -3.4139 -2.3730 -6.5199 21 6 -3.8816 -3.3823 -7.5919 22 8 -2.7135 -4.1805 -7.8818 23 6 -2.0837 -4.4119 -6.6028 24 6 0.1924 -2.3562 -1.1708 25 1 -0.4850 0.8399 -0.0004 26 1 2.7516 -3.7016 0.6400 27 1 1.6065 -5.7683 -0.0269 28 1 -0.4298 -5.6688 -1.4029 29 1 -4.2038 -2.1989 -5.7893 30 1 -3.1089 -1.4357 -6.9852 31 1 -4.6818 -4.0096 -7.1990 32 1 -4.2146 -2.8576 -8.4874 33 1 -1.0356 -4.6783 -6.7386 34 1 -2.6082 -5.1972 -6.0582 35 1 -0.2046 -1.4044 -1.4918 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826738033.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:30 Heat of formation + Delta-G solvation = -161.239959 kcal Electronic energy + Delta-G solvation = -21187.523776 eV Core-core repulsion = 17729.361789 eV Total energy + Delta-G solvation = -3458.161988 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.49159 -40.94022 -39.60203 -38.40460 -37.25469 -35.58590 -32.71983 -31.72502 -30.87428 -29.97427 -27.40823 -25.54699 -24.03073 -23.13837 -22.50036 -21.96589 -20.44861 -19.68929 -18.65932 -18.14824 -17.53175 -17.31353 -16.88515 -16.59890 -16.38170 -16.04473 -15.69287 -14.87313 -14.54434 -14.49989 -14.38459 -13.93190 -13.56124 -13.38036 -13.14281 -12.94800 -12.75888 -12.67583 -12.51386 -12.37283 -12.12458 -12.10070 -11.86045 -11.67444 -11.43093 -11.11975 -10.96444 -9.56861 -9.47422 -8.75133 -6.47813 0.00975 0.86505 1.02227 1.15385 1.35322 1.48625 1.49852 2.15059 2.57060 2.76570 3.11284 3.25773 3.55197 3.59010 3.69541 4.06501 4.13989 4.20226 4.37573 4.48319 4.52770 4.64569 4.75011 4.77560 4.84002 4.89604 4.97478 5.08091 5.21889 5.23673 5.55168 5.64813 5.74828 5.85661 5.92906 6.15494 6.43466 6.74425 6.79514 6.92633 8.20697 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.020105 B = 0.004591 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.360973 B = 6097.809203 C = 7055.282830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.031 3.969 3 Si 0.987 3.013 4 H -0.266 1.266 5 H -0.265 1.265 6 H -0.250 1.250 7 C -0.487 4.487 8 H 0.090 0.910 9 C 0.084 3.916 10 C -0.230 4.230 11 C -0.073 4.073 12 C -0.243 4.243 13 C 0.082 3.918 14 O -0.269 6.269 15 C 0.592 3.408 16 O -0.554 6.554 17 O -0.313 6.313 18 C 0.052 3.948 19 H 0.095 0.905 20 C -0.149 4.149 21 C 0.044 3.956 22 O -0.380 6.380 23 C 0.035 3.965 24 C -0.182 4.182 25 H 0.291 0.709 26 H 0.118 0.882 27 H 0.145 0.855 28 H 0.125 0.875 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.079 0.921 32 H 0.126 0.874 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.690 -2.763 -10.487 12.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.184 4.184 3 Si 0.806 3.194 4 H -0.191 1.191 5 H -0.189 1.189 6 H -0.173 1.173 7 C -0.515 4.515 8 H 0.108 0.892 9 C 0.082 3.918 10 C -0.249 4.249 11 C -0.090 4.090 12 C -0.263 4.263 13 C 0.042 3.958 14 O -0.185 6.185 15 C 0.403 3.597 16 O -0.454 6.454 17 O -0.232 6.232 18 C -0.002 4.002 19 H 0.113 0.887 20 C -0.186 4.186 21 C -0.032 4.032 22 O -0.299 6.299 23 C -0.042 4.042 24 C -0.202 4.202 25 H 0.102 0.898 26 H 0.136 0.864 27 H 0.163 0.837 28 H 0.143 0.857 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.097 0.903 32 H 0.144 0.856 33 H 0.121 0.879 34 H 0.099 0.901 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.742 -2.658 -10.738 12.954 hybrid contribution 0.263 0.876 0.352 0.980 sum -6.479 -1.782 -10.386 12.370 Atomic orbital electron populations 1.69856 1.09325 1.30980 1.34416 1.26921 0.95500 1.05109 0.90909 0.85129 0.79378 0.75380 0.79470 1.19110 1.18909 1.17307 1.19964 0.98964 0.92051 1.40542 0.89241 1.17837 0.90913 0.94111 0.88985 1.21396 1.04127 0.92337 1.07075 1.20824 0.93553 0.98377 0.96289 1.20680 1.00625 0.94677 1.10287 1.18581 0.87590 0.95078 0.94585 1.84280 1.35910 1.83490 1.14798 1.20941 0.82563 0.73631 0.82534 1.91053 1.25671 1.51807 1.76843 1.86371 1.32393 1.84067 1.20353 1.24717 1.02478 0.99360 0.73686 0.88709 1.23187 0.96418 1.00325 0.98690 1.23710 0.88174 0.91866 0.99477 1.89173 1.41016 1.73152 1.26517 1.23764 1.00350 0.95322 0.84759 1.21478 0.99368 0.96018 1.03359 0.89819 0.86403 0.83748 0.85745 0.87620 0.87074 0.90284 0.85618 0.87899 0.90131 0.87490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.48 10.78 21.82 0.24 -43.24 16 2 C 0.03 1.58 5.16 85.25 0.44 2.02 16 3 Si 0.99 37.94 29.60 68.60 2.03 39.97 16 4 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 5 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 6 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 7 C -0.49 -26.08 9.06 23.46 0.21 -25.87 16 8 H 0.09 4.50 7.91 -2.91 -0.02 4.48 16 9 C 0.08 4.61 5.60 -21.31 -0.12 4.49 16 10 C -0.23 -11.00 9.79 22.74 0.22 -10.78 16 11 C -0.07 -3.09 10.02 22.20 0.22 -2.87 16 12 C -0.24 -11.01 9.99 22.56 0.23 -10.78 16 13 C 0.08 4.17 5.07 22.45 0.11 4.28 16 14 O -0.27 -12.70 10.06 8.87 0.09 -12.61 16 15 C 0.59 25.47 8.83 113.37 1.00 26.48 16 16 O -0.55 -26.40 15.19 27.88 0.42 -25.98 16 17 O -0.31 -10.66 9.92 -47.04 -0.47 -11.12 16 18 C 0.05 1.39 3.49 31.61 0.11 1.50 16 19 H 0.09 2.82 7.14 -2.39 -0.02 2.80 16 20 C -0.15 -2.69 6.90 31.61 0.22 -2.47 16 21 C 0.04 0.67 7.63 72.49 0.55 1.22 16 22 O -0.38 -8.50 11.65 -148.98 -1.74 -10.24 16 23 C 0.04 0.85 7.39 72.48 0.54 1.38 16 24 C -0.18 -10.20 8.36 22.82 0.19 -10.01 16 25 H 0.29 13.89 8.30 -92.72 -0.77 13.12 16 26 H 0.12 5.08 8.06 -2.91 -0.02 5.06 16 27 H 0.14 4.83 8.06 -2.91 -0.02 4.81 16 28 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 29 H 0.11 1.79 8.00 -2.39 -0.02 1.78 16 30 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.08 1.84 8.09 -2.38 -0.02 1.82 16 35 H 0.11 6.39 5.95 -2.91 -0.02 6.37 16 Total: -1.00 -65.51 307.95 5.61 -59.90 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 1.11 Total: 24.74 kcal Atomic # 6 Polarization: -25.34 SS G_CDS: 3.93 Total: -21.41 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.24 Total: -43.24 kcal Atomic # 8 Polarization: -58.26 SS G_CDS: -1.69 Total: -59.95 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Total: -65.51 5.61 -59.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826738033.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.341 kcal (2) G-P(sol) polarization free energy of solvation -65.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds