Wall clock time and date at job start Tue Mar 31 2020 00:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39624 * 120.13602 * 16.24756 * 3 2 1 5 5 C 1.38157 * 119.81731 * 179.97438 * 4 3 2 6 6 F 1.35101 * 119.94885 * 180.02562 * 5 4 3 7 7 C 1.38599 * 120.09928 * 0.02562 * 5 4 3 8 8 C 1.38302 * 120.27835 * 359.70543 * 7 5 4 9 9 C 1.37973 * 120.17907 * 0.54956 * 8 7 5 10 10 C 1.50702 * 120.05295 * 179.74991 * 9 8 7 11 11 N 1.46501 * 109.47344 * 259.72429 * 10 9 8 12 12 C 1.36929 * 119.99864 * 270.00007 * 11 10 9 13 13 H 1.08001 * 120.00144 * 322.06470 * 12 11 10 14 14 C 1.38816 * 120.00157 * 142.07203 * 12 11 10 15 15 N 1.31609 * 120.00336 * 157.03093 * 14 12 11 16 16 Si 1.86804 * 119.99790 * 337.02484 * 14 12 11 17 17 H 1.48498 * 109.47243 * 95.21475 * 16 14 12 18 18 H 1.48495 * 109.47067 * 215.21549 * 16 14 12 19 19 H 1.48506 * 109.46918 * 335.21563 * 16 14 12 20 20 C 1.46505 * 119.99994 * 89.99592 * 11 10 9 21 21 C 1.50695 * 109.46956 * 82.67684 * 20 11 10 22 22 O 1.20827 * 120.00579 * 359.97438 * 21 20 11 23 23 O 1.34227 * 119.99918 * 180.02562 * 21 20 11 24 24 H 1.08004 * 120.09199 * 359.95743 * 4 3 2 25 25 H 1.07996 * 119.86285 * 179.97438 * 7 5 4 26 26 H 1.08003 * 119.91145 * 180.29747 * 8 7 5 27 27 H 1.08994 * 109.47488 * 139.72141 * 10 9 8 28 28 H 1.09001 * 109.47042 * 19.72393 * 10 9 8 29 29 H 0.97003 * 120.00230 * 179.97438 * 15 14 12 30 30 H 1.09004 * 109.47039 * 202.67647 * 20 11 10 31 31 H 1.08998 * 109.47131 * 322.67472 * 20 11 10 32 32 H 0.96706 * 117.00140 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2696 -1.1583 -0.3378 5 6 4.6512 -1.1502 -0.3362 6 9 5.3326 -2.2700 -0.6632 7 6 5.3390 0.0050 0.0004 8 6 4.6482 1.1568 0.3303 9 6 3.2685 1.1602 0.3375 10 6 2.5187 2.4153 0.7029 11 7 2.0679 2.3273 2.0940 12 6 0.8442 1.7858 2.3842 13 1 0.0022 1.9751 1.7349 14 6 0.6857 0.9937 3.5131 15 7 -0.5062 0.8455 4.0511 16 14 2.1644 0.1378 4.2685 17 1 2.7096 0.9714 5.3699 18 1 1.7505 -1.1832 4.8058 19 1 3.2084 -0.0551 3.2302 20 6 2.9264 2.8187 3.1747 21 6 2.7561 4.3096 3.3131 22 8 1.9960 4.9012 2.5836 23 8 3.4496 4.9806 4.2461 24 1 2.7337 -2.0588 -0.5995 25 1 6.4190 0.0070 0.0008 26 1 5.1903 2.0551 0.5869 27 1 1.6550 2.5264 0.0474 28 1 3.1756 3.2775 0.5876 29 1 -0.6170 0.2916 4.8397 30 1 2.6475 2.3328 4.1098 31 1 3.9672 2.5917 2.9437 32 1 3.3067 5.9356 4.2971 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833067869.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:59 Heat of formation + Delta-G solvation = -49.304997 kcal Electronic energy + Delta-G solvation = -21491.863803 eV Core-core repulsion = 17947.388125 eV Total energy + Delta-G solvation = -3544.475677 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.79954 -39.64749 -39.16542 -36.15597 -35.60786 -35.12141 -32.23195 -31.23009 -30.93110 -27.88224 -26.08896 -23.82693 -22.85901 -21.55297 -20.44418 -18.81286 -17.52271 -17.25396 -16.41760 -16.22889 -15.87428 -15.55042 -15.42975 -15.16525 -14.66053 -14.37180 -13.77741 -13.59272 -13.09756 -12.92421 -12.79424 -12.51430 -12.49292 -12.00956 -11.81708 -11.54270 -11.46800 -11.12424 -10.97740 -10.82746 -10.68699 -10.41769 -9.89453 -9.79690 -8.91653 -8.81273 -8.40086 -7.27124 -6.22544 -3.67005 0.94030 1.27225 2.92563 3.11102 3.26419 3.32265 3.33140 3.43395 3.64872 4.10135 4.27092 4.30038 4.57347 4.77022 4.93262 4.98186 5.06135 5.21421 5.38406 5.70447 5.74806 5.86787 5.98260 6.00661 6.08563 6.14137 6.25343 6.44153 6.65364 6.91072 7.07912 7.70245 8.14151 8.26933 8.53429 8.72100 9.40737 9.72371 10.90857 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.015740 B = 0.007825 C = 0.006761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.469751 B = 3577.573269 C = 4140.364834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C 0.249 3.751 3 C 0.030 3.970 4 C -0.115 4.115 5 C 0.081 3.919 6 F -0.142 7.142 7 C -0.133 4.133 8 C -0.092 4.092 9 C -0.057 4.057 10 C 0.176 3.824 11 N -0.562 5.562 12 C -0.275 4.275 13 H 0.090 0.910 14 C 0.048 3.952 15 N -0.873 5.873 16 Si 0.851 3.149 17 H -0.279 1.279 18 H -0.292 1.292 19 H -0.255 1.255 20 C 0.140 3.860 21 C 0.444 3.556 22 O -0.504 6.504 23 O -0.534 6.534 24 H 0.139 0.861 25 H 0.135 0.865 26 H 0.137 0.863 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.268 0.732 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.177 0.534 -5.627 15.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.061 5.061 2 C -0.067 4.067 3 C 0.026 3.974 4 C -0.136 4.136 5 C 0.062 3.938 6 F -0.121 7.121 7 C -0.153 4.153 8 C -0.111 4.111 9 C -0.063 4.063 10 C 0.051 3.949 11 N -0.281 5.281 12 C -0.403 4.403 13 H 0.107 0.893 14 C -0.156 4.156 15 N -0.510 5.510 16 Si 0.678 3.322 17 H -0.206 1.206 18 H -0.219 1.219 19 H -0.179 1.179 20 C 0.011 3.989 21 C 0.282 3.718 22 O -0.390 6.390 23 O -0.346 6.346 24 H 0.157 0.843 25 H 0.153 0.847 26 H 0.154 0.846 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.118 0.882 31 H 0.101 0.899 32 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 12.090 0.155 -5.742 13.386 hybrid contribution 1.174 -0.174 0.840 1.454 sum 13.264 -0.019 -4.902 14.141 Atomic orbital electron populations 1.81164 1.11746 1.05990 1.07230 1.25027 0.92141 0.94832 0.94669 1.15559 0.85417 0.93902 1.02515 1.21058 0.92439 0.98632 1.01458 1.17312 0.89488 0.83342 1.03697 1.91485 1.79842 1.50254 1.90518 1.21220 1.00725 0.91973 1.01348 1.20827 0.93010 0.97889 0.99372 1.21155 0.93846 0.97621 0.93681 1.20128 0.97110 0.90810 0.86869 1.43887 1.18382 1.65968 0.99834 1.18884 0.85013 1.25175 1.11202 0.89295 1.25519 0.95818 0.96965 0.97333 1.69866 1.22591 1.38020 1.20550 0.87291 0.84882 0.80236 0.79781 1.20621 1.21945 1.17873 1.21203 0.96658 0.85292 0.95710 1.26054 0.76532 0.93033 0.76148 1.90632 1.34966 1.69984 1.43390 1.84675 1.66120 1.26641 1.57132 0.84292 0.84675 0.84557 0.90984 0.91750 0.92198 0.88153 0.89876 0.75115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -8.71 17.89 41.84 0.75 -7.96 16 2 C 0.25 4.97 12.19 -22.47 -0.27 4.69 16 3 C 0.03 0.51 5.73 -106.94 -0.61 -0.10 16 4 C -0.11 -1.65 9.74 -39.09 -0.38 -2.03 16 5 C 0.08 1.08 7.29 -39.48 -0.29 0.79 16 6 F -0.14 -1.87 17.26 2.25 0.04 -1.83 16 7 C -0.13 -1.56 10.02 -39.42 -0.39 -1.96 16 8 C -0.09 -1.15 9.65 -39.65 -0.38 -1.53 16 9 C -0.06 -0.90 5.50 -104.21 -0.57 -1.47 16 10 C 0.18 3.14 5.31 -5.19 -0.03 3.11 16 11 N -0.56 -12.12 1.57 -175.98 -0.28 -12.40 16 12 C -0.27 -7.17 7.79 -15.06 -0.12 -7.29 16 13 H 0.09 2.65 7.65 -52.49 -0.40 2.25 16 14 C 0.05 1.29 5.24 -17.43 -0.09 1.20 16 15 N -0.87 -25.74 13.97 55.49 0.78 -24.96 16 16 Si 0.85 20.00 25.13 -169.99 -4.27 15.73 16 17 H -0.28 -6.28 6.67 56.52 0.38 -5.90 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.25 -5.62 7.11 56.52 0.40 -5.22 16 20 C 0.14 2.73 4.85 -5.19 -0.03 2.71 16 21 C 0.44 8.44 8.37 36.00 0.30 8.74 16 22 O -0.50 -11.14 17.10 -18.75 -0.32 -11.46 16 23 O -0.53 -8.13 13.42 -39.25 -0.53 -8.66 16 24 H 0.14 1.77 8.06 -52.48 -0.42 1.35 16 25 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 26 H 0.14 1.33 8.03 -52.48 -0.42 0.91 16 27 H 0.07 1.38 7.37 -51.93 -0.38 0.99 16 28 H 0.06 0.99 7.93 -51.93 -0.41 0.58 16 29 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.10 2.15 3.76 -51.93 -0.20 1.96 16 31 H 0.08 1.31 8.12 -51.93 -0.42 0.89 16 32 H 0.39 4.20 9.10 45.56 0.41 4.61 16 LS Contribution 295.30 15.07 4.45 4.45 Total: -1.00 -32.59 295.30 -4.07 -36.66 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -1.83 Total: 3.57 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: -2.87 Total: 6.86 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 1.25 Total: -45.32 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.85 Total: -20.12 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.27 Total: 15.73 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.59 -4.07 -36.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067869.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.643 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds