Wall clock time and date at job start Tue Mar 31 2020 00:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39624 * 120.13602 * 16.24756 * 3 2 1 5 5 C 1.38157 * 119.81731 * 179.97438 * 4 3 2 6 6 F 1.35101 * 119.94885 * 180.02562 * 5 4 3 7 7 C 1.38599 * 120.09928 * 0.02562 * 5 4 3 8 8 C 1.38302 * 120.27835 * 359.70543 * 7 5 4 9 9 C 1.37973 * 120.17907 * 0.54956 * 8 7 5 10 10 C 1.50702 * 120.05295 * 179.74991 * 9 8 7 11 11 N 1.46501 * 109.47344 * 259.72429 * 10 9 8 12 12 C 1.36929 * 119.99864 * 270.00007 * 11 10 9 13 13 H 1.08001 * 120.00144 * 322.06470 * 12 11 10 14 14 C 1.38816 * 120.00157 * 142.07203 * 12 11 10 15 15 N 1.31609 * 120.00336 * 157.03093 * 14 12 11 16 16 Si 1.86804 * 119.99790 * 337.02484 * 14 12 11 17 17 H 1.48498 * 109.47243 * 95.21475 * 16 14 12 18 18 H 1.48495 * 109.47067 * 215.21549 * 16 14 12 19 19 H 1.48506 * 109.46918 * 335.21563 * 16 14 12 20 20 C 1.46505 * 119.99994 * 89.99592 * 11 10 9 21 21 C 1.50695 * 109.46956 * 82.67684 * 20 11 10 22 22 O 1.20827 * 120.00579 * 359.97438 * 21 20 11 23 23 O 1.34227 * 119.99918 * 180.02562 * 21 20 11 24 24 H 1.08004 * 120.09199 * 359.95743 * 4 3 2 25 25 H 1.07996 * 119.86285 * 179.97438 * 7 5 4 26 26 H 1.08003 * 119.91145 * 180.29747 * 8 7 5 27 27 H 1.08994 * 109.47488 * 139.72141 * 10 9 8 28 28 H 1.09001 * 109.47042 * 19.72393 * 10 9 8 29 29 H 0.97003 * 120.00230 * 179.97438 * 15 14 12 30 30 H 1.09004 * 109.47039 * 202.67647 * 20 11 10 31 31 H 1.08998 * 109.47131 * 322.67472 * 20 11 10 32 32 H 0.96706 * 117.00140 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2696 -1.1583 -0.3378 5 6 4.6512 -1.1502 -0.3362 6 9 5.3326 -2.2700 -0.6632 7 6 5.3390 0.0050 0.0004 8 6 4.6482 1.1568 0.3303 9 6 3.2685 1.1602 0.3375 10 6 2.5187 2.4153 0.7029 11 7 2.0679 2.3273 2.0940 12 6 0.8442 1.7858 2.3842 13 1 0.0022 1.9751 1.7349 14 6 0.6857 0.9937 3.5131 15 7 -0.5062 0.8455 4.0511 16 14 2.1644 0.1378 4.2685 17 1 2.7096 0.9714 5.3699 18 1 1.7505 -1.1832 4.8058 19 1 3.2084 -0.0551 3.2302 20 6 2.9264 2.8187 3.1747 21 6 2.7561 4.3096 3.3131 22 8 1.9960 4.9012 2.5836 23 8 3.4496 4.9806 4.2461 24 1 2.7337 -2.0588 -0.5995 25 1 6.4190 0.0070 0.0008 26 1 5.1903 2.0551 0.5869 27 1 1.6550 2.5264 0.0474 28 1 3.1756 3.2775 0.5876 29 1 -0.6170 0.2916 4.8397 30 1 2.6475 2.3328 4.1098 31 1 3.9672 2.5917 2.9437 32 1 3.3067 5.9356 4.2971 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833067869.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:59 Heat of formation + Delta-G solvation = -71.928549 kcal Electronic energy + Delta-G solvation = -21492.844833 eV Core-core repulsion = 17947.388125 eV Total energy + Delta-G solvation = -3545.456708 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.085 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -49.82240 -41.07067 -40.40612 -37.64054 -37.17977 -36.62302 -34.04240 -32.37825 -32.31493 -29.39666 -27.67266 -25.04412 -24.35462 -22.84212 -21.94213 -20.00705 -19.05807 -18.94897 -17.76185 -17.53365 -17.02371 -16.98534 -16.55926 -16.44439 -16.31175 -15.85033 -15.01602 -14.80048 -14.64581 -14.47846 -14.38060 -14.08012 -13.96393 -13.49565 -13.33912 -12.95417 -12.74841 -12.52075 -12.46294 -12.35825 -12.11924 -11.99941 -11.77034 -11.42564 -10.72670 -10.00069 -9.56722 -9.02624 -8.24895 -5.68768 -0.20493 0.19976 1.26943 1.39163 1.45980 1.54502 1.89401 2.06171 2.26680 2.36947 2.77594 2.97764 3.08541 3.35834 3.45197 3.86300 3.91535 4.05373 4.29174 4.31581 4.46752 4.57140 4.66954 4.73274 4.96083 5.06061 5.08297 5.25084 5.49155 5.80032 5.83575 5.88602 6.16807 6.74505 6.78349 7.23864 7.48473 7.83146 8.94328 Molecular weight = 278.09amu Principal moments of inertia in cm(-1) A = 0.015740 B = 0.007825 C = 0.006761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.469751 B = 3577.573269 C = 4140.364834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.268 3.732 3 C 0.000 4.000 4 C -0.116 4.116 5 C 0.084 3.916 6 F -0.139 7.139 7 C -0.109 4.109 8 C -0.077 4.077 9 C -0.064 4.064 10 C 0.178 3.822 11 N -0.577 5.577 12 C -0.251 4.251 13 H 0.031 0.969 14 C -0.013 4.013 15 N -0.941 5.941 16 Si 0.915 3.085 17 H -0.259 1.259 18 H -0.314 1.314 19 H -0.222 1.222 20 C 0.134 3.866 21 C 0.453 3.547 22 O -0.545 6.545 23 O -0.519 6.519 24 H 0.146 0.854 25 H 0.178 0.822 26 H 0.179 0.821 27 H 0.041 0.959 28 H 0.097 0.903 29 H 0.263 0.737 30 H 0.083 0.917 31 H 0.136 0.864 32 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.816 0.853 -5.703 20.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.046 4.046 3 C -0.004 4.004 4 C -0.138 4.138 5 C 0.065 3.935 6 F -0.118 7.118 7 C -0.128 4.128 8 C -0.095 4.095 9 C -0.069 4.069 10 C 0.054 3.946 11 N -0.297 5.297 12 C -0.380 4.380 13 H 0.049 0.951 14 C -0.211 4.211 15 N -0.583 5.583 16 Si 0.740 3.260 17 H -0.185 1.185 18 H -0.243 1.243 19 H -0.144 1.144 20 C 0.006 3.994 21 C 0.293 3.707 22 O -0.434 6.434 23 O -0.332 6.332 24 H 0.164 0.836 25 H 0.195 0.805 26 H 0.196 0.804 27 H 0.060 0.940 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.153 0.847 32 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 17.806 0.507 -5.840 18.746 hybrid contribution -0.453 -0.160 0.710 0.858 sum 17.353 0.347 -5.129 18.098 Atomic orbital electron populations 1.81164 1.13900 1.08184 1.09726 1.25783 0.93100 0.92941 0.92810 1.15751 0.83488 0.95749 1.05401 1.21117 0.93427 0.98057 1.01159 1.17446 0.88894 0.84091 1.03101 1.91507 1.79529 1.50336 1.90419 1.21677 1.02742 0.90358 0.98013 1.21202 0.91073 0.99721 0.97513 1.20986 0.95371 0.95583 0.94993 1.20094 0.96925 0.93302 0.84323 1.43860 1.17526 1.66579 1.01726 1.18415 0.85695 1.24391 1.09532 0.95148 1.26155 0.98527 0.98050 0.98347 1.70041 1.25686 1.40457 1.22068 0.86269 0.81874 0.77803 0.80081 1.18459 1.24319 1.14427 1.21337 0.98670 0.85209 0.94219 1.25765 0.75827 0.93154 0.75948 1.90642 1.36709 1.70836 1.45210 1.84575 1.64755 1.28586 1.55256 0.83648 0.80457 0.80418 0.94039 0.88519 0.92834 0.89928 0.84685 0.72388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -22.09 17.89 19.01 0.34 -21.75 16 2 C 0.27 11.19 12.19 88.33 1.08 12.26 16 3 C 0.00 0.01 5.73 -21.37 -0.12 -0.11 16 4 C -0.12 -3.06 9.74 22.59 0.22 -2.84 16 5 C 0.08 1.83 7.29 22.34 0.16 1.99 16 6 F -0.14 -3.03 17.26 44.97 0.78 -2.25 16 7 C -0.11 -1.79 10.02 22.37 0.22 -1.56 16 8 C -0.08 -1.41 9.65 22.22 0.21 -1.19 16 9 C -0.06 -1.81 5.50 -19.60 -0.11 -1.92 16 10 C 0.18 6.05 5.31 85.63 0.45 6.50 16 11 N -0.58 -24.30 1.57 -710.69 -1.12 -25.41 16 12 C -0.25 -13.61 7.79 84.04 0.65 -12.95 16 13 H 0.03 1.99 7.65 -2.91 -0.02 1.96 16 14 C -0.01 -0.74 5.24 84.86 0.44 -0.30 16 15 N -0.94 -58.97 13.97 21.65 0.30 -58.67 16 16 Si 0.91 41.15 25.13 68.60 1.72 42.87 16 17 H -0.26 -10.65 6.67 99.48 0.66 -9.99 16 18 H -0.31 -15.15 7.11 99.48 0.71 -14.44 16 19 H -0.22 -8.66 7.11 99.48 0.71 -7.96 16 20 C 0.13 4.74 4.85 85.63 0.42 5.16 16 21 C 0.45 15.95 8.37 71.23 0.60 16.55 16 22 O -0.54 -23.49 17.10 21.96 0.38 -23.12 16 23 O -0.52 -13.71 13.42 -51.39 -0.69 -14.40 16 24 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 25 H 0.18 1.58 8.06 -2.91 -0.02 1.56 16 26 H 0.18 1.89 8.03 -2.91 -0.02 1.87 16 27 H 0.04 1.64 7.37 -2.39 -0.02 1.62 16 28 H 0.10 2.62 7.93 -2.39 -0.02 2.60 16 29 H 0.26 15.65 8.31 -92.71 -0.77 14.87 16 30 H 0.08 3.30 3.76 -2.38 -0.01 3.29 16 31 H 0.14 3.37 8.12 -2.39 -0.02 3.35 16 32 H 0.42 7.30 9.10 -74.05 -0.67 6.63 16 Total: -1.00 -78.70 295.30 6.42 -72.28 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 0.48 Total: 8.86 kcal Atomic # 6 Polarization: 17.35 SS G_CDS: 4.23 Total: 21.58 kcal Atomic # 7 Polarization: -105.36 SS G_CDS: -0.47 Total: -105.83 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -0.31 Total: -37.51 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.78 Total: -2.25 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 1.72 Total: 42.87 kcal Total: -78.70 6.42 -72.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067869.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.349 kcal (2) G-P(sol) polarization free energy of solvation -78.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds