Wall clock time and date at job start Tue Mar 31 2020 00:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00098 * 2 1 4 4 H 1.48496 * 109.47352 * 270.00741 * 3 2 1 5 5 H 1.48507 * 109.46637 * 30.00331 * 3 2 1 6 6 H 1.48498 * 109.47198 * 149.99863 * 3 2 1 7 7 C 1.37878 * 119.99637 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99494 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00441 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46916 * 180.02562 * 9 7 2 11 11 O 1.45207 * 109.46992 * 179.97438 * 10 9 7 12 12 C 1.34229 * 116.99793 * 180.02562 * 11 10 9 13 13 O 1.20818 * 120.00483 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.99440 * 180.02562 * 12 11 10 15 15 C 1.50698 * 109.46810 * 180.02562 * 14 12 11 16 16 C 1.37973 * 120.07992 * 100.39459 * 15 14 12 17 17 C 1.38341 * 120.14917 * 179.97438 * 16 15 14 18 18 C 1.38388 * 120.30655 * 0.02562 * 17 16 15 19 19 C 1.37927 * 120.15010 * 359.97438 * 18 17 16 20 20 C 1.39614 * 120.07510 * 280.12052 * 15 14 12 21 21 C 1.47719 * 120.14660 * 359.97438 * 20 15 14 22 22 O 1.21470 * 120.00512 * 5.45592 * 21 20 15 23 23 O 1.34716 * 119.99975 * 185.44786 * 21 20 15 24 24 H 0.96995 * 120.00295 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47085 * 60.00470 * 9 7 2 26 26 H 1.08998 * 109.47027 * 300.00043 * 9 7 2 27 27 H 1.08995 * 109.47257 * 60.00683 * 10 9 7 28 28 H 1.08997 * 109.47640 * 300.00072 * 10 9 7 29 29 H 1.08999 * 109.46913 * 299.99186 * 14 12 11 30 30 H 1.08996 * 109.47678 * 60.00062 * 14 12 11 31 31 H 1.07995 * 119.91973 * 359.97438 * 16 15 14 32 32 H 1.08000 * 119.84396 * 179.97438 * 17 16 15 33 33 H 1.08007 * 119.92700 * 179.97438 * 18 17 16 34 34 H 1.07997 * 120.07733 * 180.02562 * 19 18 17 35 35 H 0.96704 * 117.00040 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 8 1.5193 -4.9196 0.0001 12 6 2.2505 -6.0453 0.0007 13 8 3.4570 -5.9821 0.0012 14 6 1.5662 -7.3881 0.0008 15 6 2.6042 -8.4806 0.0021 16 6 2.9233 -9.1298 1.1770 17 6 3.8755 -10.1334 1.1798 18 6 4.5146 -10.4929 0.0062 19 6 4.2052 -9.8523 -1.1754 20 6 3.2409 -8.8423 -1.1865 21 6 2.8996 -8.1562 -2.4494 22 8 2.1378 -7.2101 -2.4401 23 8 3.4334 -8.5796 -3.6116 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5568 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8719 -3.6044 0.8895 28 1 2.8720 -3.6044 -0.8905 29 1 0.9432 -7.4783 0.8906 30 1 0.9439 -7.4788 -0.8894 31 1 2.4286 -8.8538 2.0965 32 1 4.1218 -10.6380 2.1024 33 1 5.2573 -11.2770 0.0155 34 1 4.7044 -10.1341 -2.0907 35 1 3.1806 -8.0989 -4.4117 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833760178.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:33 Heat of formation + Delta-G solvation = -182.616285 kcal Electronic energy + Delta-G solvation = -20865.443340 eV Core-core repulsion = 17406.354406 eV Total energy + Delta-G solvation = -3459.088935 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.99691 -41.07287 -39.65618 -37.71264 -37.18871 -35.47262 -33.99714 -32.40767 -32.33902 -29.33603 -27.01335 -25.53288 -23.71321 -23.04435 -22.42801 -21.40976 -19.16484 -19.05501 -18.39644 -18.18289 -17.64757 -17.35287 -16.81793 -16.56281 -16.36364 -16.19475 -15.45741 -15.11133 -14.48079 -14.40524 -14.29678 -14.13630 -13.54396 -13.44739 -13.05841 -13.01619 -12.78593 -12.64215 -12.59456 -12.54773 -12.15373 -11.88022 -11.56418 -11.50418 -11.40729 -11.31942 -10.63857 -10.05198 -9.88670 -8.29048 -6.43120 -0.36926 0.27869 1.23212 1.38955 1.41667 1.52176 1.53008 1.84668 2.01778 2.38812 2.79332 3.04716 3.46025 3.70954 3.90427 4.06085 4.08470 4.16766 4.23354 4.28146 4.44828 4.53175 4.54708 4.64762 4.80307 4.98268 5.23548 5.26640 5.40961 5.42429 5.44483 5.52544 5.55838 5.72528 5.87845 6.03643 6.68901 6.77585 6.87995 7.26570 8.83862 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.029306 B = 0.003494 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.204217 B = 8010.673549 C = 8369.863245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.977 3.023 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.553 4.553 8 H 0.063 0.937 9 C 0.032 3.968 10 C 0.093 3.907 11 O -0.367 6.367 12 C 0.472 3.528 13 O -0.545 6.545 14 C -0.079 4.079 15 C -0.032 4.032 16 C -0.126 4.126 17 C -0.075 4.075 18 C -0.128 4.128 19 C -0.064 4.064 20 C -0.141 4.141 21 C 0.521 3.479 22 O -0.545 6.545 23 O -0.503 6.503 24 H 0.269 0.731 25 H 0.002 0.998 26 H 0.009 0.991 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.141 0.859 30 H 0.128 0.872 31 H 0.153 0.847 32 H 0.167 0.833 33 H 0.167 0.833 34 H 0.153 0.847 35 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.465 -25.508 -0.503 26.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.800 3.200 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.590 4.590 8 H 0.082 0.918 9 C -0.005 4.005 10 C 0.020 3.980 11 O -0.284 6.284 12 C 0.318 3.682 13 O -0.436 6.436 14 C -0.116 4.116 15 C -0.032 4.032 16 C -0.144 4.144 17 C -0.093 4.093 18 C -0.145 4.145 19 C -0.082 4.082 20 C -0.142 4.142 21 C 0.367 3.633 22 O -0.438 6.438 23 O -0.317 6.317 24 H 0.078 0.922 25 H 0.021 0.979 26 H 0.028 0.972 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.159 0.841 30 H 0.145 0.855 31 H 0.171 0.829 32 H 0.184 0.816 33 H 0.184 0.816 34 H 0.171 0.829 35 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 7.575 -25.301 -0.167 26.411 hybrid contribution -0.048 1.637 -0.872 1.855 sum 7.527 -23.664 -1.039 24.854 Atomic orbital electron populations 1.70102 1.07862 1.28374 1.50217 1.26008 0.95899 1.03512 0.93918 0.85275 0.78521 0.77492 0.78708 1.19541 1.20067 1.18671 1.21362 0.93634 0.91240 1.52802 0.91831 1.18973 0.94286 0.90646 0.96597 1.23094 0.95062 0.79393 1.00424 1.86496 1.42718 1.15874 1.83315 1.23962 0.86330 0.87285 0.70655 1.90571 1.16940 1.88518 1.47551 1.20576 0.97919 0.84668 1.08415 1.19518 0.95547 0.94844 0.93333 1.21363 0.99251 0.96918 0.96820 1.21869 0.92878 0.94521 1.00002 1.21633 1.00641 1.00745 0.91514 1.21683 0.93587 0.92256 1.00707 1.19060 1.03497 1.01678 0.89971 1.21276 0.76377 0.80493 0.85106 1.90905 1.36128 1.28920 1.87801 1.84473 1.68182 1.60897 1.18123 0.92234 0.97921 0.97242 0.92122 0.93291 0.84120 0.85472 0.82944 0.81596 0.81576 0.82947 0.70712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.08 13.29 21.45 0.28 -56.79 16 2 C 0.01 0.33 5.46 84.65 0.46 0.79 16 3 Si 0.98 44.84 29.54 68.60 2.03 46.86 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.55 -32.86 9.11 25.60 0.23 -32.63 16 8 H 0.06 3.63 7.74 -2.91 -0.02 3.60 16 9 C 0.03 1.85 5.35 29.85 0.16 2.01 16 10 C 0.09 4.66 5.41 71.98 0.39 5.05 16 11 O -0.37 -16.75 10.22 -51.41 -0.53 -17.28 16 12 C 0.47 18.71 6.45 71.24 0.46 19.17 16 13 O -0.55 -23.93 15.70 21.99 0.35 -23.58 16 14 C -0.08 -2.24 5.24 29.10 0.15 -2.09 16 15 C -0.03 -0.79 4.46 -19.60 -0.09 -0.88 16 16 C -0.13 -2.26 9.66 22.23 0.21 -2.05 16 17 C -0.08 -0.96 10.04 22.33 0.22 -0.74 16 18 C -0.13 -1.61 10.03 22.23 0.22 -1.39 16 19 C -0.06 -1.14 9.62 22.54 0.22 -0.92 16 20 C -0.14 -3.48 5.76 -20.10 -0.12 -3.60 16 21 C 0.52 14.28 8.20 70.33 0.58 14.86 16 22 O -0.54 -19.00 13.05 19.93 0.26 -18.74 16 23 O -0.50 -9.72 12.70 -56.25 -0.71 -10.44 16 24 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 25 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 26 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.06 2.93 8.13 -2.39 -0.02 2.91 16 28 H 0.05 2.48 8.13 -2.39 -0.02 2.46 16 29 H 0.14 2.96 8.00 -2.39 -0.02 2.94 16 30 H 0.13 3.74 6.10 -2.39 -0.01 3.73 16 31 H 0.15 2.07 8.03 -2.91 -0.02 2.05 16 32 H 0.17 0.95 8.06 -2.91 -0.02 0.92 16 33 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 34 H 0.15 2.12 7.63 -2.91 -0.02 2.09 16 35 H 0.43 4.93 9.11 -74.05 -0.67 4.25 16 Total: -1.00 -80.06 314.17 5.23 -74.83 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 0.45 Total: 7.56 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: 3.11 Total: -2.42 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: 0.28 Total: -56.79 kcal Atomic # 8 Polarization: -69.40 SS G_CDS: -0.63 Total: -70.04 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -80.06 5.23 -74.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833760178.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.791 kcal (2) G-P(sol) polarization free energy of solvation -80.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds