Wall clock time and date at job start Tue Mar 31 2020 00:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86806 * 119.99919 * 2 1 4 4 H 1.48496 * 109.47114 * 270.00560 * 3 2 1 5 5 H 1.48506 * 109.46846 * 30.00188 * 3 2 1 6 6 H 1.48501 * 109.47357 * 150.00282 * 3 2 1 7 7 C 1.38652 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99848 * 180.02562 * 7 2 1 9 9 O 1.34831 * 120.00139 * 359.97438 * 7 2 1 10 10 C 1.35748 * 117.00077 * 174.93905 * 9 7 2 11 11 C 1.38939 * 120.04156 * 185.61609 * 10 9 7 12 12 C 1.38103 * 120.03796 * 179.97438 * 11 10 9 13 13 C 1.38238 * 120.12408 * 359.72227 * 12 11 10 14 14 C 1.38772 * 120.07943 * 0.55386 * 13 12 11 15 15 O 1.35936 * 120.01646 * 179.71961 * 14 13 12 16 16 C 1.34576 * 117.00260 * 255.01841 * 15 14 13 17 17 O 1.21439 * 119.99544 * 355.01593 * 16 15 14 18 18 O 1.34546 * 120.00429 * 175.01089 * 16 15 14 19 19 C 1.45200 * 116.99863 * 179.97438 * 18 16 15 20 20 C 1.53786 * 113.60813 * 150.00637 * 19 18 16 21 21 C 1.53777 * 87.17301 * 89.16011 * 20 19 18 22 22 C 1.53780 * 87.08526 * 25.38809 * 21 20 19 23 23 C 1.38597 * 119.95985 * 359.44814 * 14 13 12 24 24 H 0.96996 * 120.00622 * 359.97438 * 1 2 3 25 25 H 1.08002 * 119.97758 * 359.97438 * 11 10 9 26 26 H 1.08001 * 119.93511 * 180.02562 * 12 11 10 27 27 H 1.07999 * 119.95920 * 180.27948 * 13 12 11 28 28 H 1.08998 * 112.90711 * 18.75861 * 19 18 16 29 29 H 1.09001 * 113.61343 * 334.56328 * 20 19 18 30 30 H 1.09000 * 113.61005 * 203.74941 * 20 19 18 31 31 H 1.09003 * 113.61354 * 139.94207 * 21 20 19 32 32 H 1.08997 * 113.61332 * 270.83447 * 21 20 19 33 33 H 1.08999 * 113.61360 * 89.11356 * 22 21 20 34 34 H 1.08995 * 113.61090 * 219.93817 * 22 21 20 35 35 H 1.08004 * 120.05692 * 180.24671 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4969 2.0465 -1.4000 5 1 1.4469 2.6527 0.7001 6 1 3.5471 1.4403 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3348 -2.3684 -0.0005 10 6 2.0700 -3.5045 -0.1078 11 6 1.4358 -4.7344 -0.2318 12 6 2.1839 -5.8901 -0.3414 13 6 3.5647 -5.8260 -0.3339 14 6 4.2035 -4.6008 -0.2045 15 8 5.5614 -4.5399 -0.1915 16 6 6.1519 -4.3231 0.9982 17 8 5.4740 -4.1019 1.9812 18 8 7.4933 -4.3516 1.0986 19 6 8.0613 -4.1085 2.4126 20 6 9.3995 -4.8287 2.6480 21 6 10.0857 -3.5824 2.0645 22 6 8.8468 -2.7880 2.5104 23 6 3.4560 -3.4389 -0.0942 24 1 -0.4851 0.8400 0.0004 25 1 0.3571 -4.7867 -0.2424 26 1 1.6891 -6.8452 -0.4381 27 1 4.1472 -6.7310 -0.4243 28 1 7.3415 -4.2503 3.2188 29 1 9.5271 -5.7232 2.0383 30 1 9.6247 -4.9985 3.7009 31 1 10.9980 -3.2999 2.5900 32 1 10.2139 -3.6206 0.9828 33 1 8.9197 -2.3991 3.5260 34 1 8.5291 -2.0341 1.7902 35 1 3.9515 -2.4841 0.0025 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841566253.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:20 Heat of formation + Delta-G solvation = -92.223675 kcal Electronic energy + Delta-G solvation = -21029.775853 eV Core-core repulsion = 17574.606636 eV Total energy + Delta-G solvation = -3455.169217 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.19259 -39.78889 -38.67026 -37.26385 -35.88208 -35.52212 -32.34916 -29.83724 -29.00083 -26.04589 -25.90842 -25.41869 -23.69080 -21.84583 -21.22713 -19.72581 -19.04993 -18.33128 -17.72341 -16.73798 -16.49133 -15.62571 -15.54212 -15.20533 -14.75410 -14.56574 -14.20708 -13.75588 -13.51240 -13.22289 -12.95508 -12.74495 -12.58745 -12.01145 -11.63982 -11.41913 -11.30831 -11.22068 -11.11399 -10.97568 -10.80622 -10.61099 -10.53392 -10.41478 -10.36922 -9.59958 -8.91659 -8.28396 -7.42350 -6.51954 -4.11418 1.21475 2.11036 2.26027 2.55140 3.10537 3.11314 3.16344 3.91894 4.02864 4.24447 4.30713 4.45379 4.53304 4.76038 4.99408 5.10581 5.20690 5.32910 5.42147 5.52481 5.60441 5.69715 5.70449 5.76005 5.79475 5.93332 6.07654 6.12500 6.42754 6.51412 6.85068 6.95337 7.02729 7.05341 7.28073 7.54499 7.91380 8.20468 8.92982 9.57716 10.65314 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.015094 B = 0.005140 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.567642 B = 5445.918729 C = 7043.742841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.043 3.957 3 Si 0.941 3.059 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.092 0.908 9 O -0.168 6.168 10 C 0.162 3.838 11 C -0.179 4.179 12 C -0.066 4.066 13 C -0.204 4.204 14 C 0.124 3.876 15 O -0.263 6.263 16 C 0.593 3.407 17 O -0.523 6.523 18 O -0.311 6.311 19 C 0.068 3.932 20 C -0.135 4.135 21 C -0.137 4.137 22 C -0.153 4.153 23 C -0.222 4.222 24 H 0.272 0.728 25 H 0.126 0.874 26 H 0.126 0.874 27 H 0.118 0.882 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.569 -7.902 3.174 17.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.162 4.162 3 Si 0.765 3.235 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.470 4.470 8 H 0.109 0.891 9 O -0.071 6.071 10 C 0.108 3.892 11 C -0.198 4.198 12 C -0.084 4.084 13 C -0.223 4.223 14 C 0.083 3.917 15 O -0.178 6.178 16 C 0.402 3.598 17 O -0.420 6.420 18 O -0.229 6.229 19 C 0.013 3.987 20 C -0.172 4.172 21 C -0.175 4.175 22 C -0.191 4.191 23 C -0.242 4.242 24 H 0.082 0.918 25 H 0.144 0.856 26 H 0.143 0.857 27 H 0.136 0.864 28 H 0.123 0.877 29 H 0.100 0.900 30 H 0.121 0.879 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.118 0.882 34 H 0.098 0.902 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 15.065 -7.621 3.317 17.206 hybrid contribution 0.467 0.924 0.096 1.040 sum 15.532 -6.697 3.413 17.255 Atomic orbital electron populations 1.70027 1.05959 1.27914 1.45341 1.25289 0.95865 0.98849 0.96217 0.85707 0.79020 0.79883 0.78860 1.19674 1.20062 1.19137 1.21335 0.91810 0.80699 1.53175 0.89112 1.83999 1.33943 1.11384 1.77741 1.19098 0.89099 0.88527 0.92510 1.20388 1.00178 0.90133 1.09121 1.20496 0.92329 0.97363 0.98207 1.20538 0.94739 0.95191 1.11841 1.18119 0.76651 0.93876 1.03024 1.84287 1.21517 1.83650 1.28384 1.20721 0.82243 0.74409 0.82424 1.91122 1.64074 1.49743 1.37029 1.86245 1.17545 1.83593 1.35494 1.23919 0.94904 0.98115 0.81745 1.23206 0.92812 0.98808 1.02389 1.22898 0.97253 0.95581 1.01718 1.23427 0.95946 0.96527 1.03167 1.21241 0.94326 0.98228 1.10376 0.91828 0.85615 0.85655 0.86420 0.87675 0.89972 0.87886 0.90925 0.89434 0.88154 0.90152 0.84790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.03 13.67 55.48 0.76 -24.27 16 2 C 0.04 1.18 5.49 -17.52 -0.10 1.09 16 3 Si 0.94 20.73 29.55 -169.99 -5.02 15.71 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 7 C -0.39 -11.18 9.49 30.89 0.29 -10.89 16 8 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 9 O -0.17 -4.81 9.76 0.05 0.00 -4.80 16 10 C 0.16 3.99 6.65 -39.13 -0.26 3.73 16 11 C -0.18 -3.71 9.99 -39.37 -0.39 -4.11 16 12 C -0.07 -1.15 10.03 -39.63 -0.40 -1.55 16 13 C -0.20 -3.73 9.98 -39.38 -0.39 -4.13 16 14 C 0.12 2.58 5.19 -39.25 -0.20 2.38 16 15 O -0.26 -5.12 10.07 -32.39 -0.33 -5.45 16 16 C 0.59 11.06 8.81 101.05 0.89 11.95 16 17 O -0.52 -11.05 15.02 -27.41 -0.41 -11.46 16 18 O -0.31 -4.77 10.22 -47.99 -0.49 -5.26 16 19 C 0.07 0.82 4.32 -25.82 -0.11 0.71 16 20 C -0.13 -1.13 7.92 -25.92 -0.21 -1.34 16 21 C -0.14 -1.13 8.03 -25.92 -0.21 -1.34 16 22 C -0.15 -1.53 7.93 -25.83 -0.20 -1.73 16 23 C -0.22 -5.20 8.59 -39.25 -0.34 -5.53 16 24 H 0.27 7.24 8.31 -40.82 -0.34 6.91 16 25 H 0.13 2.43 8.06 -52.49 -0.42 2.00 16 26 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 27 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 28 H 0.11 1.34 7.07 -51.93 -0.37 0.98 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.13 3.24 5.64 -52.48 -0.30 2.95 16 LS Contribution 311.27 15.07 4.69 4.69 Total: -1.00 -32.09 311.27 -6.31 -38.40 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -3.88 Total: 3.22 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -1.63 Total: -10.77 kcal Atomic # 7 Polarization: -25.03 SS G_CDS: 0.76 Total: -24.27 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -1.23 Total: -26.97 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.09 -6.31 -38.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841566253.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.825 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds