Wall clock time and date at job start Tue Mar 31 2020 00:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86806 * 119.99919 * 2 1 4 4 H 1.48496 * 109.47114 * 270.00560 * 3 2 1 5 5 H 1.48506 * 109.46846 * 30.00188 * 3 2 1 6 6 H 1.48501 * 109.47357 * 150.00282 * 3 2 1 7 7 C 1.38652 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99848 * 180.02562 * 7 2 1 9 9 O 1.34831 * 120.00139 * 359.97438 * 7 2 1 10 10 C 1.35748 * 117.00077 * 174.93905 * 9 7 2 11 11 C 1.38939 * 120.04156 * 185.61609 * 10 9 7 12 12 C 1.38103 * 120.03796 * 179.97438 * 11 10 9 13 13 C 1.38238 * 120.12408 * 359.72227 * 12 11 10 14 14 C 1.38772 * 120.07943 * 0.55386 * 13 12 11 15 15 O 1.35936 * 120.01646 * 179.71961 * 14 13 12 16 16 C 1.34576 * 117.00260 * 255.01841 * 15 14 13 17 17 O 1.21439 * 119.99544 * 355.01593 * 16 15 14 18 18 O 1.34546 * 120.00429 * 175.01089 * 16 15 14 19 19 C 1.45200 * 116.99863 * 179.97438 * 18 16 15 20 20 C 1.53786 * 113.60813 * 150.00637 * 19 18 16 21 21 C 1.53777 * 87.17301 * 89.16011 * 20 19 18 22 22 C 1.53780 * 87.08526 * 25.38809 * 21 20 19 23 23 C 1.38597 * 119.95985 * 359.44814 * 14 13 12 24 24 H 0.96996 * 120.00622 * 359.97438 * 1 2 3 25 25 H 1.08002 * 119.97758 * 359.97438 * 11 10 9 26 26 H 1.08001 * 119.93511 * 180.02562 * 12 11 10 27 27 H 1.07999 * 119.95920 * 180.27948 * 13 12 11 28 28 H 1.08998 * 112.90711 * 18.75861 * 19 18 16 29 29 H 1.09001 * 113.61343 * 334.56328 * 20 19 18 30 30 H 1.09000 * 113.61005 * 203.74941 * 20 19 18 31 31 H 1.09003 * 113.61354 * 139.94207 * 21 20 19 32 32 H 1.08997 * 113.61332 * 270.83447 * 21 20 19 33 33 H 1.08999 * 113.61360 * 89.11356 * 22 21 20 34 34 H 1.08995 * 113.61090 * 219.93817 * 22 21 20 35 35 H 1.08004 * 120.05692 * 180.24671 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4969 2.0465 -1.4000 5 1 1.4469 2.6527 0.7001 6 1 3.5471 1.4403 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3348 -2.3684 -0.0005 10 6 2.0700 -3.5045 -0.1078 11 6 1.4358 -4.7344 -0.2318 12 6 2.1839 -5.8901 -0.3414 13 6 3.5647 -5.8260 -0.3339 14 6 4.2035 -4.6008 -0.2045 15 8 5.5614 -4.5399 -0.1915 16 6 6.1519 -4.3231 0.9982 17 8 5.4740 -4.1019 1.9812 18 8 7.4933 -4.3516 1.0986 19 6 8.0613 -4.1085 2.4126 20 6 9.3995 -4.8287 2.6480 21 6 10.0857 -3.5824 2.0645 22 6 8.8468 -2.7880 2.5104 23 6 3.4560 -3.4389 -0.0942 24 1 -0.4851 0.8400 0.0004 25 1 0.3571 -4.7867 -0.2424 26 1 1.6891 -6.8452 -0.4381 27 1 4.1472 -6.7310 -0.4243 28 1 7.3415 -4.2503 3.2188 29 1 9.5271 -5.7232 2.0383 30 1 9.6247 -4.9985 3.7009 31 1 10.9980 -3.2999 2.5900 32 1 10.2139 -3.6206 0.9828 33 1 8.9197 -2.3991 3.5260 34 1 8.5291 -2.0341 1.7902 35 1 3.9515 -2.4841 0.0025 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841566253.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:19 Heat of formation + Delta-G solvation = -110.924327 kcal Electronic energy + Delta-G solvation = -21030.586774 eV Core-core repulsion = 17574.606636 eV Total energy + Delta-G solvation = -3455.980138 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.103 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.67564 -41.13533 -40.26132 -38.63549 -37.52207 -36.84696 -34.37348 -31.50058 -30.72510 -27.57843 -26.88474 -26.68844 -25.03941 -23.53862 -22.77748 -20.87773 -20.38197 -20.15952 -19.37423 -18.19124 -18.06046 -16.93089 -16.85079 -16.61342 -16.19327 -16.08439 -15.72139 -15.53906 -14.97687 -14.77296 -14.43908 -14.02661 -13.74931 -13.41357 -13.27631 -13.09723 -12.80964 -12.61144 -12.44306 -12.32156 -12.21697 -12.07264 -11.89139 -11.57585 -11.41999 -11.26631 -10.89039 -9.92301 -9.22540 -8.55639 -6.25175 -0.29881 0.48141 0.74043 1.05278 1.29364 1.38420 1.46371 2.11106 2.62081 2.88190 3.02209 3.35176 3.43094 3.46763 3.80076 3.91276 3.92625 3.99815 4.14338 4.24895 4.45896 4.61338 4.69625 4.71126 4.86897 4.91850 4.96075 4.98530 4.99307 5.06231 5.26918 5.33940 5.40619 5.46747 5.52623 5.90542 5.93758 6.70498 6.88013 7.61602 8.66433 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.015094 B = 0.005140 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.567642 B = 5445.918729 C = 7043.742841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.013 4.013 3 Si 1.014 2.986 4 H -0.258 1.258 5 H -0.263 1.263 6 H -0.262 1.262 7 C -0.421 4.421 8 H 0.090 0.910 9 O -0.217 6.217 10 C 0.128 3.872 11 C -0.181 4.181 12 C -0.046 4.046 13 C -0.179 4.179 14 C 0.112 3.888 15 O -0.263 6.263 16 C 0.596 3.404 17 O -0.553 6.553 18 O -0.305 6.305 19 C 0.039 3.961 20 C -0.118 4.118 21 C -0.129 4.129 22 C -0.156 4.156 23 C -0.241 4.241 24 H 0.277 0.723 25 H 0.137 0.863 26 H 0.183 0.817 27 H 0.161 0.839 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.132 0.868 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.061 0.939 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.914 -9.940 3.414 20.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.212 4.212 3 Si 0.832 3.168 4 H -0.183 1.183 5 H -0.187 1.187 6 H -0.186 1.186 7 C -0.496 4.496 8 H 0.107 0.893 9 O -0.123 6.123 10 C 0.076 3.924 11 C -0.200 4.200 12 C -0.063 4.063 13 C -0.198 4.198 14 C 0.071 3.929 15 O -0.179 6.179 16 C 0.406 3.594 17 O -0.452 6.452 18 O -0.223 6.223 19 C -0.015 4.015 20 C -0.155 4.155 21 C -0.167 4.167 22 C -0.193 4.193 23 C -0.261 4.261 24 H 0.086 0.914 25 H 0.155 0.845 26 H 0.200 0.800 27 H 0.178 0.822 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.150 0.850 31 H 0.117 0.883 32 H 0.098 0.902 33 H 0.139 0.861 34 H 0.080 0.920 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 17.459 -9.714 3.547 20.292 hybrid contribution -0.101 1.221 0.038 1.226 sum 17.359 -8.493 3.585 19.655 Atomic orbital electron populations 1.70140 1.07726 1.29130 1.47723 1.26496 0.96884 1.02385 0.95396 0.84674 0.77656 0.74854 0.79568 1.18278 1.18711 1.18626 1.21683 0.92086 0.81614 1.54266 0.89258 1.83958 1.35178 1.12325 1.80856 1.19681 0.89819 0.88924 0.93942 1.20809 1.01292 0.89770 1.08175 1.21123 0.91925 0.98320 0.94958 1.21156 0.95489 0.95417 1.07713 1.18338 0.77254 0.94077 1.03209 1.84263 1.20881 1.83720 1.29015 1.20813 0.83182 0.73717 0.81675 1.91102 1.65032 1.51220 1.37861 1.86291 1.15254 1.82993 1.37723 1.24548 0.96016 1.01069 0.79856 1.23285 0.89362 0.98666 1.04203 1.22877 0.97457 0.94748 1.01574 1.23547 0.96443 0.95283 1.04014 1.21194 0.94361 0.98568 1.11940 0.91422 0.84486 0.79979 0.82175 0.88871 0.89616 0.85041 0.88304 0.90244 0.86105 0.92019 0.87123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.70 13.67 21.61 0.30 -55.41 16 2 C -0.01 -0.73 5.49 84.83 0.47 -0.26 16 3 Si 1.01 43.99 29.55 68.60 2.03 46.02 16 4 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 5 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 6 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 7 C -0.42 -25.40 9.49 67.92 0.64 -24.75 16 8 H 0.09 5.18 5.20 -2.91 -0.02 5.16 16 9 O -0.22 -13.24 9.76 -22.73 -0.22 -13.46 16 10 C 0.13 6.51 6.65 22.56 0.15 6.66 16 11 C -0.18 -7.38 9.99 22.41 0.22 -7.15 16 12 C -0.05 -1.42 10.03 22.24 0.22 -1.20 16 13 C -0.18 -5.91 9.98 22.40 0.22 -5.68 16 14 C 0.11 4.59 5.19 22.48 0.12 4.71 16 15 O -0.26 -10.13 10.07 8.87 0.09 -10.04 16 16 C 0.60 22.27 8.81 113.37 1.00 23.26 16 17 O -0.55 -23.79 15.02 27.87 0.42 -23.38 16 18 O -0.30 -9.21 10.22 -46.97 -0.48 -9.69 16 19 C 0.04 0.90 4.32 31.18 0.13 1.03 16 20 C -0.12 -1.65 7.92 31.12 0.25 -1.41 16 21 C -0.13 -1.79 8.03 31.12 0.25 -1.54 16 22 C -0.16 -2.91 7.93 31.18 0.25 -2.66 16 23 C -0.24 -11.72 8.59 22.48 0.19 -11.52 16 24 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 25 H 0.14 5.19 8.06 -2.91 -0.02 5.17 16 26 H 0.18 3.72 8.06 -2.91 -0.02 3.70 16 27 H 0.16 4.02 8.06 -2.91 -0.02 4.00 16 28 H 0.09 2.37 7.07 -2.39 -0.02 2.35 16 29 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.11 5.78 5.64 -2.91 -0.02 5.76 16 Total: -1.00 -75.75 311.27 7.36 -68.39 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 1.11 Total: 18.09 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: 4.12 Total: -20.52 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: 0.30 Total: -55.41 kcal Atomic # 8 Polarization: -56.37 SS G_CDS: -0.19 Total: -56.57 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -75.75 7.36 -68.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841566253.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.531 kcal (2) G-P(sol) polarization free energy of solvation -75.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds