Wall clock time and date at job start Tue Mar 31 2020 01:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47566 * 77.49752 * 3 2 1 5 5 C 1.37097 * 119.99867 * 265.87833 * 4 3 2 6 6 H 1.08001 * 119.99810 * 190.57902 * 5 4 3 7 7 C 1.38949 * 120.00242 * 10.56968 * 5 4 3 8 8 N 1.31412 * 119.99658 * 21.93508 * 7 5 4 9 9 Si 1.86797 * 120.00249 * 201.93599 * 7 5 4 10 10 H 1.48494 * 109.47079 * 89.99962 * 9 7 5 11 11 H 1.48504 * 109.47022 * 210.00117 * 9 7 5 12 12 H 1.48504 * 109.46827 * 330.00077 * 9 7 5 13 13 C 1.34778 * 120.00130 * 85.87259 * 4 3 2 14 14 O 1.21297 * 119.99700 * 4.80168 * 13 4 3 15 15 C 1.50696 * 119.99992 * 184.80451 * 13 4 3 16 16 H 1.08995 * 109.47038 * 324.03592 * 15 13 4 17 17 C 1.52999 * 109.47417 * 84.04184 * 15 13 4 18 18 C 1.50706 * 109.46831 * 204.03962 * 15 13 4 19 19 N 1.29031 * 124.91374 * 119.98082 * 18 15 13 20 20 C 1.31779 * 117.11964 * 180.02562 * 19 18 15 21 21 C 1.50706 * 122.74346 * 180.02562 * 20 19 18 22 22 C 1.33638 * 114.50684 * 0.02562 * 20 19 18 23 23 S 1.70966 * 124.91600 * 300.02062 * 18 15 13 24 24 H 4.40647 * 5.51534 * 180.02562 * 4 1 2 25 25 H 1.09000 * 109.47360 * 317.49072 * 3 2 1 26 26 H 1.09000 * 109.46534 * 197.49750 * 3 2 1 27 27 H 0.96999 * 120.00113 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.47069 * 57.41542 * 17 15 13 29 29 H 1.08998 * 109.46934 * 177.41974 * 17 15 13 30 30 H 1.08999 * 109.46572 * 297.41770 * 17 15 13 31 31 H 1.08997 * 109.46911 * 270.00123 * 21 20 19 32 32 H 1.08997 * 109.47478 * 30.00266 * 21 20 19 33 33 H 1.09004 * 109.46819 * 150.00426 * 21 20 19 34 34 H 1.07997 * 126.03841 * 180.25763 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.2981 -1.3484 5 6 3.4442 -1.5879 -1.6952 6 1 3.9618 -1.7885 -2.6216 7 6 3.0922 -2.6369 -0.8547 8 7 2.1230 -2.4818 0.0191 9 14 3.9967 -4.2674 -0.9668 10 1 5.1632 -4.2506 -0.0481 11 1 3.0792 -5.3699 -0.5818 12 1 4.4666 -4.4780 -2.3597 13 6 3.2797 0.6949 -2.2481 14 8 3.0895 1.8461 -1.9166 15 6 3.6780 0.3750 -3.6658 16 1 4.3793 -0.4593 -3.6666 17 6 2.4340 -0.0036 -4.4720 18 6 4.3320 1.5816 -4.2882 19 7 5.5370 1.6135 -4.7484 20 6 5.9544 2.7535 -5.2610 21 6 7.3368 2.9321 -5.8339 22 6 5.0514 3.7383 -5.2312 23 16 3.5849 3.1067 -4.4860 24 1 -1.0500 0.0001 -0.0003 25 1 3.0098 -0.7567 0.6944 26 1 3.0088 0.9810 0.3090 27 1 1.8770 -3.2142 0.6056 28 1 1.7132 0.8131 -4.4330 29 1 2.7156 -0.1905 -5.5083 30 1 1.9869 -0.9033 -4.0491 31 1 8.0155 3.2639 -5.0483 32 1 7.6872 1.9832 -6.2399 33 1 7.3074 3.6783 -6.6279 34 1 5.1937 4.7423 -5.6027 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847178863.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:42 Heat of formation + Delta-G solvation = 76.181240 kcal Electronic energy + Delta-G solvation = -19258.082464 eV Core-core repulsion = 16285.261455 eV Total energy + Delta-G solvation = -2972.821010 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.65071 -38.70484 -35.33097 -33.66251 -31.96546 -31.45368 -30.57205 -27.33451 -26.68300 -25.10067 -24.61781 -22.02317 -19.33100 -19.27302 -18.05676 -17.10634 -16.37905 -16.28689 -15.05260 -14.64778 -14.39714 -14.29524 -14.11831 -13.36144 -13.18130 -12.84364 -12.64174 -12.40392 -12.10877 -12.00986 -11.82251 -11.44754 -11.32561 -11.11306 -11.08322 -10.79763 -10.49794 -10.41215 -9.45263 -9.41127 -9.18365 -9.05887 -8.78222 -8.35853 -8.23552 -8.03877 -6.48707 -4.01285 1.13928 1.87793 2.31664 3.05175 3.13530 3.18023 3.19481 3.59397 3.83936 4.07905 4.20683 4.36271 4.88640 4.94370 5.24144 5.37189 5.49286 5.59589 5.68359 5.71995 5.79109 5.84138 5.98375 6.10441 6.23991 6.39582 6.55900 6.60813 6.68709 6.91126 7.12341 7.31217 7.52341 8.17971 8.20866 8.90029 8.92759 9.30214 9.70077 10.50277 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.020766 B = 0.005974 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.010527 B = 4686.007804 C = 5554.362690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.100 4.100 3 C 0.236 3.764 4 N -0.427 5.427 5 C -0.347 4.347 6 H 0.106 0.894 7 C 0.040 3.960 8 N -0.850 5.850 9 Si 0.919 3.081 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.461 3.539 14 O -0.596 6.596 15 C -0.025 4.025 16 H 0.118 0.882 17 C -0.132 4.132 18 C 0.082 3.918 19 N -0.485 5.485 20 C 0.062 3.938 21 C -0.074 4.074 22 C -0.302 4.302 23 S 0.182 5.818 24 H 0.198 0.802 25 H 0.116 0.884 26 H 0.068 0.932 27 H 0.272 0.728 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.152 5.464 -7.467 9.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.101 4.101 3 C 0.114 3.886 4 N -0.143 5.143 5 C -0.474 4.474 6 H 0.124 0.876 7 C -0.166 4.166 8 N -0.486 5.486 9 Si 0.745 3.255 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.192 1.192 13 C 0.248 3.752 14 O -0.482 6.482 15 C -0.050 4.050 16 H 0.136 0.864 17 C -0.191 4.191 18 C -0.195 4.195 19 N -0.200 5.200 20 C -0.072 4.072 21 C -0.134 4.134 22 C -0.442 4.442 23 S 0.439 5.561 24 H 0.215 0.785 25 H 0.134 0.866 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.280 5.817 -6.843 9.266 hybrid contribution 0.979 -0.961 -0.263 1.397 sum 3.259 4.856 -7.106 9.204 Atomic orbital electron populations 1.24225 0.95343 1.07276 1.02406 1.23183 0.94322 0.94545 0.98053 1.18261 0.84129 1.00226 0.86018 1.43637 1.54793 1.06873 1.09015 1.19732 1.37301 0.81374 1.08948 0.87634 1.25244 0.95092 0.99724 0.96580 1.70138 1.23265 1.33423 1.21798 0.86051 0.79371 0.80936 0.79144 1.20119 1.20941 1.19244 1.19615 0.83834 0.85551 0.86186 1.90567 1.58077 1.20101 1.79482 1.19729 0.98463 0.93321 0.93474 0.86384 1.21684 0.95473 1.03065 0.98841 1.26616 0.92950 0.99587 1.00393 1.66146 1.13134 1.26743 1.14020 1.20161 0.98299 0.87936 1.00770 1.20286 0.90476 1.02586 1.00004 1.26899 0.99307 1.05027 1.12916 1.84051 1.15061 1.06350 1.50613 0.78450 0.86596 0.91441 0.91760 0.92536 0.92202 0.89760 0.91086 0.90902 0.91256 0.81466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -6.04 19.25 29.55 0.57 -5.47 16 2 C -0.10 -2.40 11.80 -37.12 -0.44 -2.84 16 3 C 0.24 5.66 5.14 -6.83 -0.04 5.62 16 4 N -0.43 -10.42 2.60 -117.94 -0.31 -10.72 16 5 C -0.35 -8.35 9.00 -14.93 -0.13 -8.48 16 6 H 0.11 2.41 5.86 -52.49 -0.31 2.11 16 7 C 0.04 0.95 4.95 -17.47 -0.09 0.87 16 8 N -0.85 -21.07 9.24 55.50 0.51 -20.56 16 9 Si 0.92 18.71 29.61 -169.99 -5.03 13.67 16 10 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 11 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 12 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 13 C 0.46 10.89 6.70 -10.99 -0.07 10.82 16 14 O -0.60 -15.07 14.60 5.54 0.08 -14.99 16 15 C -0.03 -0.51 2.43 -92.92 -0.23 -0.74 16 16 H 0.12 2.42 6.21 -51.93 -0.32 2.09 16 17 C -0.13 -2.34 9.04 37.16 0.34 -2.01 16 18 C 0.08 1.61 5.82 -13.45 -0.08 1.53 16 19 N -0.49 -9.34 10.53 -8.05 -0.08 -9.42 16 20 C 0.06 1.01 6.74 -84.22 -0.57 0.44 16 21 C -0.07 -0.89 10.31 36.01 0.37 -0.51 16 22 C -0.30 -4.57 11.13 29.12 0.32 -4.24 16 23 S 0.18 3.18 21.43 -107.50 -2.30 0.87 16 24 H 0.20 3.53 7.80 -54.09 -0.42 3.11 16 25 H 0.12 2.82 6.05 -51.93 -0.31 2.51 16 26 H 0.07 1.58 7.49 -51.93 -0.39 1.19 16 27 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 28 H 0.06 0.99 8.02 -51.93 -0.42 0.58 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 1.57 7.93 -51.93 -0.41 1.15 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 34 H 0.17 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 309.90 15.07 4.67 4.67 Total: -1.00 -28.88 309.90 -6.33 -35.21 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -3.83 Total: 6.27 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -0.04 Total: -5.01 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.12 Total: -40.70 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: 0.08 Total: -14.99 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.67 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -2.30 Total: 0.87 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.88 -6.33 -35.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847178863.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.394 kcal (2) G-P(sol) polarization free energy of solvation -28.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds