Wall clock time and date at job start Tue Mar 31 2020 01:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47566 * 77.49752 * 3 2 1 5 5 C 1.37097 * 119.99867 * 265.87833 * 4 3 2 6 6 H 1.08001 * 119.99810 * 190.57902 * 5 4 3 7 7 C 1.38949 * 120.00242 * 10.56968 * 5 4 3 8 8 N 1.31412 * 119.99658 * 21.93508 * 7 5 4 9 9 Si 1.86797 * 120.00249 * 201.93599 * 7 5 4 10 10 H 1.48494 * 109.47079 * 89.99962 * 9 7 5 11 11 H 1.48504 * 109.47022 * 210.00117 * 9 7 5 12 12 H 1.48504 * 109.46827 * 330.00077 * 9 7 5 13 13 C 1.34778 * 120.00130 * 85.87259 * 4 3 2 14 14 O 1.21297 * 119.99700 * 4.80168 * 13 4 3 15 15 C 1.50696 * 119.99992 * 184.80451 * 13 4 3 16 16 H 1.08995 * 109.47038 * 324.03592 * 15 13 4 17 17 C 1.52999 * 109.47417 * 84.04184 * 15 13 4 18 18 C 1.50706 * 109.46831 * 204.03962 * 15 13 4 19 19 N 1.29031 * 124.91374 * 119.98082 * 18 15 13 20 20 C 1.31779 * 117.11964 * 180.02562 * 19 18 15 21 21 C 1.50706 * 122.74346 * 180.02562 * 20 19 18 22 22 C 1.33638 * 114.50684 * 0.02562 * 20 19 18 23 23 S 1.70966 * 124.91600 * 300.02062 * 18 15 13 24 24 H 4.40647 * 5.51534 * 180.02562 * 4 1 2 25 25 H 1.09000 * 109.47360 * 317.49072 * 3 2 1 26 26 H 1.09000 * 109.46534 * 197.49750 * 3 2 1 27 27 H 0.96999 * 120.00113 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.47069 * 57.41542 * 17 15 13 29 29 H 1.08998 * 109.46934 * 177.41974 * 17 15 13 30 30 H 1.08999 * 109.46572 * 297.41770 * 17 15 13 31 31 H 1.08997 * 109.46911 * 270.00123 * 21 20 19 32 32 H 1.08997 * 109.47478 * 30.00266 * 21 20 19 33 33 H 1.09004 * 109.46819 * 150.00426 * 21 20 19 34 34 H 1.07997 * 126.03841 * 180.25763 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.2981 -1.3484 5 6 3.4442 -1.5879 -1.6952 6 1 3.9618 -1.7885 -2.6216 7 6 3.0922 -2.6369 -0.8547 8 7 2.1230 -2.4818 0.0191 9 14 3.9967 -4.2674 -0.9668 10 1 5.1632 -4.2506 -0.0481 11 1 3.0792 -5.3699 -0.5818 12 1 4.4666 -4.4780 -2.3597 13 6 3.2797 0.6949 -2.2481 14 8 3.0895 1.8461 -1.9166 15 6 3.6780 0.3750 -3.6658 16 1 4.3793 -0.4593 -3.6666 17 6 2.4340 -0.0036 -4.4720 18 6 4.3320 1.5816 -4.2882 19 7 5.5370 1.6135 -4.7484 20 6 5.9544 2.7535 -5.2610 21 6 7.3368 2.9321 -5.8339 22 6 5.0514 3.7383 -5.2312 23 16 3.5849 3.1067 -4.4860 24 1 -1.0500 0.0001 -0.0003 25 1 3.0098 -0.7567 0.6944 26 1 3.0088 0.9810 0.3090 27 1 1.8770 -3.2142 0.6056 28 1 1.7132 0.8131 -4.4330 29 1 2.7156 -0.1905 -5.5083 30 1 1.9869 -0.9033 -4.0491 31 1 8.0155 3.2639 -5.0483 32 1 7.6872 1.9832 -6.2399 33 1 7.3074 3.6783 -6.6279 34 1 5.1937 4.7423 -5.6027 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847178863.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:39 Heat of formation + Delta-G solvation = 59.919376 kcal Electronic energy + Delta-G solvation = -19258.787632 eV Core-core repulsion = 16285.261455 eV Total energy + Delta-G solvation = -2973.526177 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.15307 -40.32505 -37.15369 -35.21314 -33.78183 -33.19919 -31.88529 -28.51659 -28.42905 -26.79939 -26.17283 -23.54621 -21.03873 -20.65376 -19.74971 -18.64674 -18.05651 -17.97187 -16.60158 -16.21470 -16.07377 -15.91756 -15.63043 -14.88783 -14.61763 -14.40048 -13.99969 -13.85540 -13.53728 -13.43973 -13.26365 -13.01192 -12.84147 -12.73983 -12.70058 -12.16670 -12.07164 -12.03434 -11.25828 -11.23285 -10.64088 -10.57456 -10.53944 -10.01468 -9.91236 -9.53063 -8.30973 -5.89509 -0.19555 0.55932 1.00492 1.40478 1.50470 1.59721 1.80489 1.82960 2.10246 2.33611 2.39304 2.89061 3.07515 3.32222 3.85992 3.96254 4.16149 4.23300 4.30262 4.38550 4.44841 4.71792 4.81392 4.83475 4.84378 4.90353 4.99662 5.06245 5.15993 5.39128 5.43445 5.47673 5.69155 6.35251 6.85609 7.06691 7.11037 7.46676 7.86380 8.68061 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.020766 B = 0.005974 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.010527 B = 4686.007804 C = 5554.362690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.148 4.148 3 C 0.238 3.762 4 N -0.437 5.437 5 C -0.363 4.363 6 H 0.113 0.887 7 C 0.004 3.996 8 N -0.872 5.872 9 Si 0.983 3.017 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.260 1.260 13 C 0.452 3.548 14 O -0.620 6.620 15 C -0.019 4.019 16 H 0.110 0.890 17 C -0.122 4.122 18 C 0.051 3.949 19 N -0.503 5.503 20 C 0.040 3.960 21 C -0.071 4.071 22 C -0.280 4.280 23 S 0.171 5.829 24 H 0.237 0.763 25 H 0.106 0.894 26 H 0.062 0.938 27 H 0.272 0.728 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.658 5.802 -8.960 11.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.150 4.150 3 C 0.116 3.884 4 N -0.153 5.153 5 C -0.490 4.490 6 H 0.130 0.870 7 C -0.200 4.200 8 N -0.509 5.509 9 Si 0.807 3.193 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.184 1.184 13 C 0.240 3.760 14 O -0.508 6.508 15 C -0.043 4.043 16 H 0.128 0.872 17 C -0.181 4.181 18 C -0.226 4.226 19 N -0.219 5.219 20 C -0.093 4.093 21 C -0.130 4.130 22 C -0.419 4.419 23 S 0.427 5.573 24 H 0.254 0.746 25 H 0.124 0.876 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 2.796 6.152 -8.345 10.738 hybrid contribution 0.806 -0.961 0.201 1.270 sum 3.601 5.190 -8.144 10.307 Atomic orbital electron populations 1.25157 0.96332 1.05196 1.00400 1.23476 0.95026 0.96479 0.99989 1.18121 0.84771 0.99426 0.86084 1.43840 1.54893 1.07321 1.09242 1.20026 1.37779 0.81506 1.09644 0.86957 1.25995 0.95343 1.02517 0.96117 1.70240 1.24118 1.34238 1.22301 0.85071 0.77913 0.77001 0.79301 1.20169 1.21010 1.18395 1.20213 0.83278 0.85097 0.87363 1.90527 1.59052 1.20923 1.80273 1.19590 0.99213 0.93755 0.91738 0.87175 1.21621 0.94380 1.02250 0.99830 1.26454 0.93732 1.00158 1.02257 1.66161 1.13035 1.28599 1.14147 1.20836 1.00272 0.87261 1.00896 1.20415 0.87994 1.03612 1.00964 1.27334 0.97271 1.06351 1.10911 1.84006 1.16597 1.05718 1.50964 0.74642 0.87616 0.92037 0.91801 0.92698 0.89600 0.90969 0.90296 0.91036 0.88097 0.77588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.94 19.25 74.32 1.43 -9.50 16 2 C -0.15 -7.25 11.80 31.12 0.37 -6.88 16 3 C 0.24 11.84 5.14 84.57 0.43 12.28 16 4 N -0.44 -21.88 2.60 -645.42 -1.68 -23.56 16 5 C -0.36 -17.73 9.00 84.04 0.76 -16.97 16 6 H 0.11 5.20 5.86 -2.91 -0.02 5.18 16 7 C 0.00 0.21 4.95 84.93 0.42 0.63 16 8 N -0.87 -43.66 9.24 21.66 0.20 -43.46 16 9 Si 0.98 38.25 29.61 68.60 2.03 40.28 16 10 H -0.28 -10.71 7.11 99.48 0.71 -10.00 16 11 H -0.28 -11.03 7.11 99.48 0.71 -10.33 16 12 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 13 C 0.45 21.88 6.70 87.66 0.59 22.46 16 14 O -0.62 -32.12 14.60 -3.08 -0.04 -32.17 16 15 C -0.02 -0.76 2.43 -12.29 -0.03 -0.79 16 16 H 0.11 4.60 6.21 -2.39 -0.01 4.58 16 17 C -0.12 -4.33 9.04 71.98 0.65 -3.68 16 18 C 0.05 1.98 5.82 88.52 0.52 2.50 16 19 N -0.50 -18.97 10.53 -179.40 -1.89 -20.86 16 20 C 0.04 1.21 6.74 41.52 0.28 1.49 16 21 C -0.07 -1.48 10.31 71.24 0.73 -0.75 16 22 C -0.28 -7.70 11.13 66.78 0.74 -6.96 16 23 S 0.17 5.82 21.43 -56.49 -1.21 4.61 16 24 H 0.24 7.84 7.80 -4.42 -0.03 7.81 16 25 H 0.11 5.36 6.05 -2.39 -0.01 5.35 16 26 H 0.06 3.02 7.49 -2.39 -0.02 3.00 16 27 H 0.27 12.98 8.31 -92.71 -0.77 12.21 16 28 H 0.05 1.93 8.02 -2.39 -0.02 1.91 16 29 H 0.09 2.54 8.14 -2.39 -0.02 2.53 16 30 H 0.07 2.70 7.93 -2.39 -0.02 2.68 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.10 1.46 8.12 -2.39 -0.02 1.44 16 34 H 0.21 3.91 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -62.46 309.90 5.41 -57.05 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 1.11 Total: 24.27 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 6.89 Total: -6.18 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -3.36 Total: -87.87 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -0.04 Total: -32.17 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Atomic # 16 Polarization: 5.82 SS G_CDS: -1.21 Total: 4.61 kcal Total: -62.46 5.41 -57.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847178863.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.968 kcal (2) G-P(sol) polarization free energy of solvation -62.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds