Wall clock time and date at job start Tue Mar 31 2020 01:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47104 * 317.74107 * 3 2 1 5 5 C 1.37101 * 120.00103 * 266.27267 * 4 3 2 6 6 H 1.07994 * 119.99986 * 210.80645 * 5 4 3 7 7 C 1.38958 * 119.99912 * 30.53065 * 5 4 3 8 8 N 1.31408 * 120.00029 * 23.12663 * 7 5 4 9 9 Si 1.86792 * 119.99774 * 203.12974 * 7 5 4 10 10 H 1.48497 * 109.47420 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47062 * 120.00176 * 9 7 5 12 12 H 1.48495 * 109.47278 * 239.99654 * 9 7 5 13 13 C 1.34776 * 119.99783 * 86.26844 * 4 3 2 14 14 O 1.21289 * 120.00596 * 356.72541 * 13 4 3 15 15 C 1.50707 * 119.99742 * 176.72206 * 13 4 3 16 16 H 1.08998 * 109.47359 * 45.67948 * 15 13 4 17 17 C 1.53001 * 109.47053 * 285.68228 * 15 13 4 18 18 C 1.50699 * 109.46975 * 165.68512 * 15 13 4 19 19 N 1.29033 * 124.91182 * 239.99368 * 18 15 13 20 20 C 1.31779 * 117.12082 * 179.97438 * 19 18 15 21 21 C 1.50709 * 122.74763 * 180.02562 * 20 19 18 22 22 C 1.33635 * 114.50587 * 0.02562 * 20 19 18 23 23 S 1.70968 * 124.91953 * 59.69339 * 18 15 13 24 24 H 4.40638 * 5.51298 * 180.02562 * 4 1 2 25 25 H 1.09002 * 109.46690 * 197.74473 * 3 2 1 26 26 H 1.09002 * 109.46983 * 77.74134 * 3 2 1 27 27 H 0.97004 * 120.00113 * 179.97438 * 8 7 5 28 28 H 1.09000 * 109.47109 * 184.68474 * 17 15 13 29 29 H 1.09000 * 109.47341 * 304.68443 * 17 15 13 30 30 H 1.09002 * 109.47237 * 64.67826 * 17 15 13 31 31 H 1.08995 * 109.47141 * 89.99903 * 21 20 19 32 32 H 1.09000 * 109.46927 * 210.00408 * 21 20 19 33 33 H 1.08996 * 109.46614 * 330.00250 * 21 20 19 34 34 H 1.07993 * 126.04359 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1348 -1.0214 0.9288 5 6 3.4360 -0.6838 2.2231 6 1 4.2128 -1.2150 2.7529 7 6 2.7456 0.3457 2.8512 8 7 1.5500 0.6892 2.4276 9 14 3.5171 1.2412 4.2975 10 1 4.8583 0.6680 4.5764 11 1 3.6527 2.6836 3.9714 12 1 2.6533 1.0837 5.4951 13 6 3.2884 -2.2935 0.5111 14 8 2.9661 -2.6049 -0.6160 15 6 3.8607 -3.3292 1.4443 16 1 3.3846 -3.2411 2.4209 17 6 5.3676 -3.1075 1.5898 18 6 3.6073 -4.7050 0.8841 19 7 2.9299 -5.6301 1.4760 20 6 2.8033 -6.7796 0.8441 21 6 2.0392 -7.9452 1.4175 22 6 3.4078 -6.8270 -0.3468 23 16 4.1694 -5.2637 -0.6308 24 1 -1.0498 -0.0003 0.0000 25 1 3.0089 0.9796 0.3132 26 1 3.0095 -0.2174 -1.0043 27 1 1.0679 1.4076 2.8663 28 1 5.7952 -3.9049 2.1976 29 1 5.8325 -3.1129 0.6040 30 1 5.5486 -2.1466 2.0715 31 1 0.9964 -7.8846 1.1063 32 1 2.4729 -8.8774 1.0554 33 1 2.0959 -7.9167 2.5056 34 1 3.4233 -7.6726 -1.0183 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847178865.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:44 Heat of formation + Delta-G solvation = 72.364661 kcal Electronic energy + Delta-G solvation = -19299.105176 eV Core-core repulsion = 16326.118667 eV Total energy + Delta-G solvation = -2972.986509 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.62991 -38.68154 -35.21198 -33.70566 -31.89289 -31.43315 -30.52796 -27.31710 -26.49866 -25.21896 -24.58856 -21.99179 -19.30451 -19.23611 -17.98769 -17.10577 -16.50673 -16.05742 -15.03480 -14.63594 -14.49373 -14.33051 -13.95572 -13.33339 -13.20343 -12.79147 -12.65087 -12.37994 -12.17929 -12.02411 -11.84118 -11.56605 -11.39865 -11.12970 -10.93718 -10.73841 -10.47233 -10.44499 -9.35017 -9.25670 -9.15795 -9.00560 -8.76668 -8.36532 -8.20357 -7.86912 -6.36858 -4.09329 1.16202 1.89131 2.31466 3.05845 3.16741 3.19664 3.21950 3.66161 3.91544 4.11514 4.29554 4.40792 4.91224 5.01332 5.23916 5.39259 5.50940 5.64318 5.71491 5.71970 5.73756 5.86245 6.02222 6.12656 6.26797 6.41356 6.54218 6.55606 6.62113 6.66591 7.16261 7.38501 7.69082 8.21692 8.22210 8.97193 9.06420 9.32029 9.75065 10.56828 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.020849 B = 0.005805 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.663400 B = 4822.149308 C = 5221.948345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.109 4.109 3 C 0.243 3.757 4 N -0.428 5.428 5 C -0.363 4.363 6 H 0.103 0.897 7 C 0.047 3.953 8 N -0.831 5.831 9 Si 0.910 3.090 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.282 1.282 13 C 0.473 3.527 14 O -0.592 6.592 15 C -0.024 4.024 16 H 0.122 0.878 17 C -0.139 4.139 18 C 0.089 3.911 19 N -0.484 5.484 20 C 0.064 3.936 21 C -0.074 4.074 22 C -0.299 4.299 23 S 0.171 5.829 24 H 0.195 0.805 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.269 0.731 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.157 -8.102 -1.989 9.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.110 4.110 3 C 0.120 3.880 4 N -0.146 5.146 5 C -0.490 4.490 6 H 0.120 0.880 7 C -0.162 4.162 8 N -0.465 5.465 9 Si 0.736 3.264 10 H -0.190 1.190 11 H -0.205 1.205 12 H -0.208 1.208 13 C 0.260 3.740 14 O -0.478 6.478 15 C -0.049 4.049 16 H 0.140 0.860 17 C -0.198 4.198 18 C -0.189 4.189 19 N -0.199 5.199 20 C -0.070 4.070 21 C -0.134 4.134 22 C -0.438 4.438 23 S 0.428 5.572 24 H 0.212 0.788 25 H 0.106 0.894 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 5.241 -7.507 -2.804 9.575 hybrid contribution -0.717 -0.087 1.322 1.507 sum 4.524 -7.594 -1.482 8.962 Atomic orbital electron populations 1.24082 0.95216 1.02702 1.05600 1.22914 0.94235 0.98143 0.95746 1.17967 0.84679 0.92679 0.92665 1.43446 1.56106 1.04657 1.10360 1.19613 1.19733 1.20781 0.88884 0.87964 1.25419 0.93999 0.98437 0.98376 1.70189 1.08537 1.27286 1.40460 0.86147 0.79664 0.79544 0.81003 1.19017 1.20517 1.20765 1.19834 0.83056 0.83054 0.88032 1.90581 1.55960 1.79733 1.21519 1.19645 0.98411 0.85582 1.01239 0.85982 1.21832 0.92101 1.03604 1.02236 1.26564 0.98106 0.99125 0.95119 1.66134 1.17418 1.00515 1.35822 1.20170 1.00554 0.94213 0.92066 1.20291 0.98829 0.92832 1.01438 1.26834 1.11331 1.03005 1.02667 1.83874 1.49645 1.03142 1.20523 0.78775 0.89367 0.90946 0.91989 0.92179 0.92548 0.89434 0.91052 0.91237 0.90877 0.81446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.98 18.94 29.55 0.56 -5.42 16 2 C -0.11 -2.68 11.03 -37.12 -0.41 -3.09 16 3 C 0.24 5.68 5.12 -6.83 -0.03 5.65 16 4 N -0.43 -10.36 2.56 -117.93 -0.30 -10.66 16 5 C -0.36 -8.68 8.26 -14.93 -0.12 -8.80 16 6 H 0.10 2.27 5.16 -52.49 -0.27 2.00 16 7 C 0.05 1.13 4.80 -17.47 -0.08 1.05 16 8 N -0.83 -21.34 9.83 55.50 0.55 -20.79 16 9 Si 0.91 18.61 29.61 -169.99 -5.03 13.58 16 10 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 11 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 12 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 13 C 0.47 11.19 6.81 -10.98 -0.07 11.12 16 14 O -0.59 -15.08 14.62 5.55 0.08 -15.00 16 15 C -0.02 -0.49 2.32 -92.92 -0.22 -0.71 16 16 H 0.12 2.63 7.45 -51.93 -0.39 2.25 16 17 C -0.14 -2.31 8.81 37.16 0.33 -1.98 16 18 C 0.09 1.77 5.72 -13.45 -0.08 1.69 16 19 N -0.48 -9.67 10.53 -8.06 -0.08 -9.76 16 20 C 0.06 1.07 6.74 -84.22 -0.57 0.50 16 21 C -0.07 -0.93 10.31 36.01 0.37 -0.56 16 22 C -0.30 -4.61 11.13 29.12 0.32 -4.29 16 23 S 0.17 2.97 21.61 -107.50 -2.32 0.65 16 24 H 0.20 3.79 7.80 -54.10 -0.42 3.36 16 25 H 0.09 2.01 7.50 -51.93 -0.39 1.62 16 26 H 0.07 1.60 7.59 -51.93 -0.39 1.21 16 27 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 30 H 0.09 1.45 6.03 -51.93 -0.31 1.13 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.68 8.12 -51.93 -0.42 0.25 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.17 2.00 8.06 -52.49 -0.42 1.57 16 LS Contribution 308.59 15.07 4.65 4.65 Total: -1.00 -30.03 308.59 -6.31 -36.35 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -3.84 Total: 5.83 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 0.00 Total: -4.85 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: 0.16 Total: -41.20 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: 0.08 Total: -15.00 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -2.32 Total: 0.65 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.03 -6.31 -36.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847178865.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.710 kcal (2) G-P(sol) polarization free energy of solvation -30.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds