Wall clock time and date at job start Tue Mar 31 2020 01:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47104 * 317.74107 * 3 2 1 5 5 C 1.37101 * 120.00103 * 266.27267 * 4 3 2 6 6 H 1.07994 * 119.99986 * 210.80645 * 5 4 3 7 7 C 1.38958 * 119.99912 * 30.53065 * 5 4 3 8 8 N 1.31408 * 120.00029 * 23.12663 * 7 5 4 9 9 Si 1.86792 * 119.99774 * 203.12974 * 7 5 4 10 10 H 1.48497 * 109.47420 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47062 * 120.00176 * 9 7 5 12 12 H 1.48495 * 109.47278 * 239.99654 * 9 7 5 13 13 C 1.34776 * 119.99783 * 86.26844 * 4 3 2 14 14 O 1.21289 * 120.00596 * 356.72541 * 13 4 3 15 15 C 1.50707 * 119.99742 * 176.72206 * 13 4 3 16 16 H 1.08998 * 109.47359 * 45.67948 * 15 13 4 17 17 C 1.53001 * 109.47053 * 285.68228 * 15 13 4 18 18 C 1.50699 * 109.46975 * 165.68512 * 15 13 4 19 19 N 1.29033 * 124.91182 * 239.99368 * 18 15 13 20 20 C 1.31779 * 117.12082 * 179.97438 * 19 18 15 21 21 C 1.50709 * 122.74763 * 180.02562 * 20 19 18 22 22 C 1.33635 * 114.50587 * 0.02562 * 20 19 18 23 23 S 1.70968 * 124.91953 * 59.69339 * 18 15 13 24 24 H 4.40638 * 5.51298 * 180.02562 * 4 1 2 25 25 H 1.09002 * 109.46690 * 197.74473 * 3 2 1 26 26 H 1.09002 * 109.46983 * 77.74134 * 3 2 1 27 27 H 0.97004 * 120.00113 * 179.97438 * 8 7 5 28 28 H 1.09000 * 109.47109 * 184.68474 * 17 15 13 29 29 H 1.09000 * 109.47341 * 304.68443 * 17 15 13 30 30 H 1.09002 * 109.47237 * 64.67826 * 17 15 13 31 31 H 1.08995 * 109.47141 * 89.99903 * 21 20 19 32 32 H 1.09000 * 109.46927 * 210.00408 * 21 20 19 33 33 H 1.08996 * 109.46614 * 330.00250 * 21 20 19 34 34 H 1.07993 * 126.04359 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1348 -1.0214 0.9288 5 6 3.4360 -0.6838 2.2231 6 1 4.2128 -1.2150 2.7529 7 6 2.7456 0.3457 2.8512 8 7 1.5500 0.6892 2.4276 9 14 3.5171 1.2412 4.2975 10 1 4.8583 0.6680 4.5764 11 1 3.6527 2.6836 3.9714 12 1 2.6533 1.0837 5.4951 13 6 3.2884 -2.2935 0.5111 14 8 2.9661 -2.6049 -0.6160 15 6 3.8607 -3.3292 1.4443 16 1 3.3846 -3.2411 2.4209 17 6 5.3676 -3.1075 1.5898 18 6 3.6073 -4.7050 0.8841 19 7 2.9299 -5.6301 1.4760 20 6 2.8033 -6.7796 0.8441 21 6 2.0392 -7.9452 1.4175 22 6 3.4078 -6.8270 -0.3468 23 16 4.1694 -5.2637 -0.6308 24 1 -1.0498 -0.0003 0.0000 25 1 3.0089 0.9796 0.3132 26 1 3.0095 -0.2174 -1.0043 27 1 1.0679 1.4076 2.8663 28 1 5.7952 -3.9049 2.1976 29 1 5.8325 -3.1129 0.6040 30 1 5.5486 -2.1466 2.0715 31 1 0.9964 -7.8846 1.1063 32 1 2.4729 -8.8774 1.0554 33 1 2.0959 -7.9167 2.5056 34 1 3.4233 -7.6726 -1.0183 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847178865.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:44 Heat of formation + Delta-G solvation = 54.852761 kcal Electronic energy + Delta-G solvation = -19299.864549 eV Core-core repulsion = 16326.118667 eV Total energy + Delta-G solvation = -2973.745882 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.14413 -40.31250 -37.04221 -35.24600 -33.73605 -33.18061 -31.87565 -28.47874 -28.29118 -26.90131 -26.13373 -23.51706 -20.99225 -20.65009 -19.70575 -18.73244 -18.08829 -17.79202 -16.60089 -16.33278 -16.10038 -15.80792 -15.56716 -14.89222 -14.63228 -14.35192 -14.00196 -13.91751 -13.54321 -13.49173 -13.28171 -13.05200 -12.92854 -12.78777 -12.39834 -12.18102 -12.05386 -12.03384 -11.17456 -11.10527 -10.63414 -10.59898 -10.51098 -10.02797 -9.74946 -9.51929 -8.20606 -5.98047 -0.18919 0.56443 0.98388 1.41471 1.52022 1.63366 1.76944 1.92753 2.13678 2.36012 2.43512 2.92392 3.10696 3.35608 3.88610 3.94170 4.17625 4.24131 4.31900 4.40382 4.51951 4.73219 4.76236 4.79131 4.87038 4.89252 4.91198 5.04387 5.15439 5.37759 5.42930 5.57346 5.86168 6.37184 6.87655 7.11386 7.20274 7.48517 7.91079 8.73580 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.020849 B = 0.005805 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.663400 B = 4822.149308 C = 5221.948345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.146 4.146 3 C 0.242 3.758 4 N -0.438 5.438 5 C -0.373 4.373 6 H 0.117 0.883 7 C 0.005 3.995 8 N -0.865 5.865 9 Si 0.979 3.021 10 H -0.251 1.251 11 H -0.280 1.280 12 H -0.289 1.289 13 C 0.464 3.536 14 O -0.617 6.617 15 C -0.018 4.018 16 H 0.102 0.898 17 C -0.130 4.130 18 C 0.053 3.947 19 N -0.510 5.510 20 C 0.039 3.961 21 C -0.071 4.071 22 C -0.279 4.279 23 S 0.176 5.824 24 H 0.226 0.774 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.267 0.733 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.906 -9.499 -1.738 11.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.148 4.148 3 C 0.119 3.881 4 N -0.155 5.155 5 C -0.500 4.500 6 H 0.134 0.866 7 C -0.201 4.201 8 N -0.499 5.499 9 Si 0.803 3.197 10 H -0.174 1.174 11 H -0.206 1.206 12 H -0.215 1.215 13 C 0.253 3.747 14 O -0.504 6.504 15 C -0.042 4.042 16 H 0.120 0.880 17 C -0.188 4.188 18 C -0.224 4.224 19 N -0.226 5.226 20 C -0.094 4.094 21 C -0.130 4.130 22 C -0.418 4.418 23 S 0.432 5.568 24 H 0.243 0.757 25 H 0.105 0.895 26 H 0.095 0.905 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.121 0.879 33 H 0.088 0.912 34 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 6.006 -8.911 -2.545 11.044 hybrid contribution -1.020 0.255 1.165 1.569 sum 4.987 -8.656 -1.380 10.085 Atomic orbital electron populations 1.24929 0.96278 1.01548 1.04498 1.23439 0.95223 0.99296 0.96849 1.17985 0.84504 0.92679 0.92903 1.43664 1.56064 1.05085 1.10665 1.20024 1.19970 1.20987 0.88992 0.86599 1.26231 0.94156 0.98861 1.00849 1.70310 1.09799 1.27787 1.41995 0.85104 0.79206 0.78073 0.77366 1.17407 1.20573 1.21523 1.20436 0.82615 0.83423 0.88268 1.90539 1.56938 1.80244 1.22686 1.19524 1.00220 0.85348 0.99143 0.87968 1.21793 0.89669 1.04327 1.03028 1.26484 1.00001 0.99167 0.96714 1.66149 1.17571 1.01680 1.37183 1.20824 1.01422 0.94374 0.92768 1.20414 0.98813 0.92560 1.01247 1.27303 1.09177 1.02848 1.02489 1.83756 1.49498 1.04447 1.19091 0.75720 0.89451 0.90466 0.92256 0.89955 0.91963 0.89511 0.90538 0.87897 0.91158 0.77513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -11.82 18.94 74.32 1.41 -10.41 16 2 C -0.15 -7.35 11.03 31.13 0.34 -7.01 16 3 C 0.24 11.59 5.12 84.57 0.43 12.02 16 4 N -0.44 -21.49 2.56 -645.40 -1.65 -23.14 16 5 C -0.37 -17.89 8.26 84.04 0.69 -17.19 16 6 H 0.12 5.10 5.16 -2.91 -0.02 5.09 16 7 C 0.00 0.23 4.80 84.93 0.41 0.64 16 8 N -0.86 -44.83 9.83 21.67 0.21 -44.62 16 9 Si 0.98 38.00 29.61 68.60 2.03 40.04 16 10 H -0.25 -9.04 7.11 99.48 0.71 -8.33 16 11 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 12 H -0.29 -11.49 7.11 99.48 0.71 -10.79 16 13 C 0.46 22.29 6.81 87.66 0.60 22.89 16 14 O -0.62 -31.89 14.62 -3.06 -0.04 -31.93 16 15 C -0.02 -0.73 2.32 -12.28 -0.03 -0.76 16 16 H 0.10 4.52 7.45 -2.39 -0.02 4.51 16 17 C -0.13 -4.21 8.81 71.98 0.63 -3.58 16 18 C 0.05 2.11 5.72 88.52 0.51 2.62 16 19 N -0.51 -20.11 10.53 -179.40 -1.89 -22.00 16 20 C 0.04 1.23 6.74 41.52 0.28 1.51 16 21 C -0.07 -1.60 10.31 71.24 0.73 -0.87 16 22 C -0.28 -7.86 11.13 66.77 0.74 -7.11 16 23 S 0.18 5.90 21.61 -56.49 -1.22 4.68 16 24 H 0.23 8.52 7.80 -4.43 -0.03 8.48 16 25 H 0.09 4.09 7.50 -2.39 -0.02 4.07 16 26 H 0.08 3.52 7.59 -2.39 -0.02 3.50 16 27 H 0.27 13.30 8.31 -92.71 -0.77 12.53 16 28 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.06 1.92 8.10 -2.39 -0.02 1.91 16 30 H 0.09 2.79 6.03 -2.39 -0.01 2.78 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.10 1.60 8.12 -2.39 -0.02 1.58 16 33 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.21 4.01 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -64.87 308.59 5.30 -59.56 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 1.11 Total: 24.66 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 6.75 Total: -7.25 kcal Atomic # 7 Polarization: -86.43 SS G_CDS: -3.33 Total: -89.76 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -0.04 Total: -31.93 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.04 kcal Atomic # 16 Polarization: 5.90 SS G_CDS: -1.22 Total: 4.68 kcal Total: -64.87 5.30 -59.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847178865.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.417 kcal (2) G-P(sol) polarization free energy of solvation -64.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds