Wall clock time and date at job start Tue Mar 31 2020 00:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00151 * 2 1 4 4 H 1.48491 * 109.47259 * 240.00253 * 3 2 1 5 5 H 1.48502 * 109.46796 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46890 * 119.99778 * 3 2 1 7 7 C 1.37879 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00310 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99752 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46695 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.46911 * 180.02562 * 10 9 7 12 12 C 1.36887 * 126.39910 * 264.97849 * 11 10 9 13 13 C 1.34672 * 106.81700 * 179.97438 * 12 11 10 14 14 N 1.34127 * 108.01948 * 0.22851 * 13 12 11 15 15 C 1.30502 * 109.25683 * 359.61488 * 14 13 12 16 16 C 1.50700 * 125.64425 * 180.14781 * 15 14 13 17 17 H 1.09004 * 109.46516 * 165.27535 * 16 15 14 18 18 O 1.42898 * 109.47401 * 45.27723 * 16 15 14 19 19 C 1.50696 * 109.47349 * 285.27191 * 16 15 14 20 20 C 1.33390 * 125.20483 * 264.72234 * 19 16 15 21 21 C 1.38432 * 114.91868 * 179.85740 * 20 19 16 22 22 C 1.33384 * 114.92010 * 0.43539 * 21 20 19 23 23 S 1.75881 * 109.59607 * 359.76870 * 22 21 20 24 24 H 0.96996 * 120.00034 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.46820 * 60.00629 * 9 7 2 26 26 H 1.08996 * 109.47024 * 299.99886 * 9 7 2 27 27 H 1.09005 * 109.47308 * 60.00435 * 10 9 7 28 28 H 1.09001 * 109.47594 * 299.99787 * 10 9 7 29 29 H 1.07996 * 126.58790 * 0.02562 * 12 11 10 30 30 H 1.08002 * 125.98510 * 179.97438 * 13 12 11 31 31 H 0.96698 * 113.99604 * 299.99816 * 18 16 15 32 32 H 1.07997 * 122.54042 * 0.02562 * 20 19 16 33 33 H 1.08005 * 122.53677 * 180.20042 * 21 20 19 34 34 H 1.08000 * 125.19947 * 179.74852 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 1.1899 -5.6828 1.0961 13 6 0.5209 -6.7615 0.6460 14 7 0.4421 -6.6731 -0.6901 15 6 1.0297 -5.5765 -1.0843 16 6 1.1535 -5.1111 -2.5122 17 1 1.4495 -4.0621 -2.5280 18 8 -0.1047 -5.2609 -3.1729 19 6 2.1949 -5.9376 -3.2215 20 6 3.4763 -5.5978 -3.3700 21 6 4.2482 -6.5190 -4.0568 22 6 3.5918 -7.6026 -4.4740 23 16 1.9052 -7.4944 -3.9870 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8720 -3.6044 0.8895 28 1 2.8720 -3.6044 -0.8905 29 1 1.4254 -5.4544 2.1250 30 1 0.1218 -7.5600 1.2539 31 1 -0.4304 -6.1711 -3.1967 32 1 3.8813 -4.6752 -2.9813 33 1 5.3014 -6.3697 -4.2441 34 1 4.0290 -8.4210 -5.0266 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849913478.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:58 Heat of formation + Delta-G solvation = 20.067982 kcal Electronic energy + Delta-G solvation = -19026.130901 eV Core-core repulsion = 16050.876637 eV Total energy + Delta-G solvation = -2975.254263 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.10585 -39.22814 -37.74197 -36.47169 -34.54391 -32.30868 -31.29405 -29.98400 -27.15251 -26.64678 -24.29281 -23.55409 -22.28220 -21.04108 -20.33670 -19.03004 -18.92866 -17.97947 -16.80931 -16.70395 -16.38607 -16.11492 -15.90745 -15.16000 -14.91728 -14.58209 -14.46351 -14.17504 -13.97368 -13.60477 -13.45372 -13.07829 -12.93193 -12.79542 -12.67039 -12.16789 -11.98746 -11.90180 -11.62728 -11.49501 -11.02032 -10.62955 -10.45975 -9.74637 -9.40101 -9.31511 -8.26293 -6.40667 -0.03078 0.61431 1.04944 1.09895 1.41624 1.44029 1.52020 1.75145 1.92652 2.13321 2.39292 3.08732 3.23210 3.26622 3.63687 3.84880 3.91543 4.20422 4.25714 4.35560 4.55060 4.56478 4.59605 4.67385 4.78393 5.13523 5.21936 5.31117 5.32365 5.51100 5.52678 5.67107 5.85708 5.99295 6.21945 6.34940 6.75228 7.06507 7.30898 8.85560 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.019039 B = 0.005108 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.330350 B = 5480.123920 C = 6177.891298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.969 3.031 4 H -0.263 1.263 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.076 0.924 9 C 0.024 3.976 10 C 0.114 3.886 11 N -0.439 5.439 12 C -0.054 4.054 13 C -0.047 4.047 14 N -0.501 5.501 15 C 0.155 3.845 16 C 0.272 3.728 17 H 0.114 0.886 18 O -0.546 6.546 19 C -0.227 4.227 20 C -0.132 4.132 21 C -0.142 4.142 22 C -0.206 4.206 23 S 0.125 5.875 24 H 0.265 0.735 25 H -0.010 1.010 26 H -0.008 1.008 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.198 0.802 30 H 0.196 0.804 31 H 0.387 0.613 32 H 0.144 0.856 33 H 0.167 0.833 34 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.506 -14.700 -5.323 17.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.793 3.207 4 H -0.188 1.188 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.094 0.906 9 C -0.013 4.013 10 C -0.007 4.007 11 N -0.121 5.121 12 C -0.188 4.188 13 C -0.196 4.196 14 N -0.222 5.222 15 C -0.108 4.108 16 C 0.209 3.791 17 H 0.132 0.868 18 O -0.352 6.352 19 C -0.345 4.345 20 C -0.163 4.163 21 C -0.172 4.172 22 C -0.342 4.342 23 S 0.389 5.611 24 H 0.073 0.927 25 H 0.009 0.991 26 H 0.011 0.989 27 H 0.123 0.877 28 H 0.111 0.889 29 H 0.215 0.785 30 H 0.213 0.787 31 H 0.236 0.764 32 H 0.162 0.838 33 H 0.184 0.816 34 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 6.858 -15.319 -6.124 17.867 hybrid contribution 1.359 1.994 1.097 2.651 sum 8.217 -13.325 -5.027 16.442 Atomic orbital electron populations 1.70116 1.08150 1.28131 1.50687 1.25987 0.95601 1.03601 0.94238 0.85440 0.78161 0.77643 0.79480 1.18808 1.21402 1.18731 1.21416 0.93960 0.90943 1.51889 0.90556 1.19210 0.94161 0.92563 0.95407 1.22162 0.94598 0.79276 1.04677 1.45719 1.40887 1.18731 1.06724 1.23314 1.06595 0.95058 0.93843 1.22717 1.05253 1.00854 0.90745 1.69973 1.21114 1.17563 1.13553 1.23732 1.02552 0.92533 0.91965 1.18165 0.81956 0.97728 0.81264 0.86839 1.86615 1.36164 1.34506 1.77874 1.25016 0.99428 1.01260 1.08838 1.20392 0.92252 1.02255 1.01443 1.20368 1.02500 0.93648 1.00706 1.26091 0.95944 1.04282 1.07885 1.84119 1.10408 1.15050 1.51561 0.92666 0.99124 0.98947 0.87730 0.88896 0.78512 0.78666 0.76373 0.83832 0.81552 0.78726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.68 13.29 21.45 0.28 -55.40 16 2 C 0.00 0.25 5.46 84.66 0.46 0.72 16 3 Si 0.97 42.06 29.54 68.60 2.03 44.09 16 4 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 5 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 7 C -0.54 -28.58 9.11 25.60 0.23 -28.35 16 8 H 0.08 3.66 7.74 -2.91 -0.02 3.64 16 9 C 0.02 1.22 5.30 29.85 0.16 1.38 16 10 C 0.11 4.30 5.55 86.38 0.48 4.78 16 11 N -0.44 -16.11 2.75 -514.27 -1.41 -17.53 16 12 C -0.05 -1.72 11.58 83.09 0.96 -0.76 16 13 C -0.05 -1.50 11.87 83.52 0.99 -0.51 16 14 N -0.50 -18.13 11.14 -188.13 -2.10 -20.22 16 15 C 0.15 5.75 6.76 138.13 0.93 6.69 16 16 C 0.27 9.59 3.70 29.10 0.11 9.70 16 17 H 0.11 4.34 7.09 -2.38 -0.02 4.32 16 18 O -0.55 -19.74 13.23 -148.98 -1.97 -21.71 16 19 C -0.23 -6.71 5.50 24.59 0.14 -6.57 16 20 C -0.13 -3.45 10.05 21.22 0.21 -3.23 16 21 C -0.14 -2.94 10.18 21.22 0.22 -2.73 16 22 C -0.21 -3.99 11.23 66.72 0.75 -3.25 16 23 S 0.12 3.03 22.53 -56.49 -1.27 1.76 16 24 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 25 H -0.01 -0.54 8.04 -2.39 -0.02 -0.56 16 26 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 27 H 0.10 3.52 8.14 -2.38 -0.02 3.50 16 28 H 0.09 3.23 7.58 -2.39 -0.02 3.21 16 29 H 0.20 5.02 8.06 -2.91 -0.02 5.00 16 30 H 0.20 4.74 8.06 -2.91 -0.02 4.72 16 31 H 0.39 12.03 8.29 -74.06 -0.61 11.42 16 32 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 33 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.20 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -67.62 313.67 1.70 -65.92 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.50 Total: 25.23 kcal Atomic # 6 Polarization: -27.78 SS G_CDS: 5.64 Total: -22.14 kcal Atomic # 7 Polarization: -89.92 SS G_CDS: -3.23 Total: -93.15 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -1.97 Total: -21.71 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -1.27 Total: 1.76 kcal Total: -67.62 1.70 -65.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849913478.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.991 kcal (2) G-P(sol) polarization free energy of solvation -67.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds