Wall clock time and date at job start Mon Mar 30 2020 23:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09006 * 109.47424 * 2 1 4 4 C 1.50697 * 109.47775 * 120.00731 * 2 1 3 5 5 H 1.08007 * 119.99542 * 25.70974 * 4 2 1 6 6 C 1.37875 * 120.00717 * 205.71358 * 4 2 1 7 7 N 1.31517 * 119.99625 * 353.02468 * 6 4 2 8 8 Si 1.86791 * 120.00414 * 173.02375 * 6 4 2 9 9 H 1.48500 * 109.47357 * 180.02562 * 8 6 4 10 10 H 1.48505 * 109.47374 * 299.99880 * 8 6 4 11 11 H 1.48501 * 109.47466 * 59.99930 * 8 6 4 12 12 O 1.45203 * 109.47055 * 240.00707 * 2 1 3 13 13 C 1.34800 * 117.00139 * 89.99568 * 12 2 1 14 14 O 1.21548 * 120.00247 * 0.02562 * 13 12 2 15 15 C 1.47188 * 120.00185 * 180.02562 * 13 12 2 16 16 N 1.35805 * 126.61296 * 0.02727 * 15 13 12 17 17 C 1.29979 * 108.73653 * 179.97438 * 16 15 13 18 18 O 1.33977 * 109.76267 * 359.97438 * 17 16 15 19 19 C 1.34740 * 108.23484 * 359.77065 * 18 17 16 20 20 C 1.47763 * 126.75285 * 180.24969 * 19 18 17 21 21 C 1.42479 * 126.96996 * 0.13453 * 20 19 18 22 22 C 1.35181 * 103.92776 * 180.02562 * 21 20 19 23 23 O 1.34072 * 106.73963 * 359.97438 * 22 21 20 24 24 N 1.20908 * 111.89792 * 359.70854 * 23 22 21 25 25 H 1.08998 * 109.47431 * 56.55679 * 1 2 3 26 26 H 1.09004 * 109.47341 * 176.56010 * 1 2 3 27 27 H 1.09006 * 109.46820 * 296.55464 * 1 2 3 28 28 H 0.97008 * 119.99665 * 354.60631 * 7 6 4 29 29 H 1.08003 * 125.11696 * 180.02562 * 17 16 15 30 30 H 1.08008 * 128.03903 * 359.97438 * 21 20 19 31 31 H 1.08002 * 126.62924 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 1.4179 -1.4571 1.7115 6 6 3.2765 -0.4077 1.7417 7 7 4.0801 0.3979 1.0822 8 14 3.8205 -1.1413 3.3711 9 1 5.1877 -0.6626 3.6976 10 1 2.8807 -0.7213 4.4415 11 1 3.8252 -2.6229 3.2700 12 8 2.0139 -0.6844 -1.1857 13 6 2.2178 0.0674 -2.2858 14 8 1.9975 1.2624 -2.2548 15 6 2.7072 -0.5587 -3.5247 16 7 2.9949 -1.8731 -3.7091 17 6 3.3990 -2.0444 -4.9326 18 8 3.3902 -0.8720 -5.5809 19 6 2.9568 0.0777 -4.7290 20 6 2.7849 1.5159 -5.0213 21 6 3.0406 2.1754 -6.2581 22 6 2.7312 3.4673 -6.0080 23 8 2.3319 3.5282 -4.7295 24 7 2.3599 2.4435 -4.1962 25 1 -0.3634 0.5663 -0.8575 26 1 -0.3634 -1.0258 -0.0617 27 1 -0.3633 0.4594 0.9193 28 1 3.8309 0.7166 0.2005 29 1 3.6962 -2.9898 -5.3621 30 1 3.3993 1.7437 -7.1809 31 1 2.7928 4.2911 -6.7038 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850843541.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:06 Heat of formation + Delta-G solvation = 14.187688 kcal Electronic energy + Delta-G solvation = -21358.749752 eV Core-core repulsion = 17804.654534 eV Total energy + Delta-G solvation = -3554.095217 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.078 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.99801 -43.31571 -39.06175 -35.66241 -34.89695 -34.39914 -33.02813 -31.87261 -30.27908 -29.78547 -25.28666 -24.68000 -23.94382 -22.67272 -22.02465 -20.94912 -19.83469 -18.53455 -17.68601 -17.44226 -17.17068 -16.73542 -16.32258 -15.62751 -14.84370 -14.72092 -14.49938 -13.79924 -13.65356 -13.43678 -13.20028 -12.53089 -11.91593 -11.44065 -11.38803 -11.23395 -11.10380 -11.03337 -10.81389 -10.66979 -10.24078 -10.14079 -9.83536 -9.69394 -9.24053 -8.67431 -8.61568 -8.54741 -6.57816 -4.37626 0.58727 1.51321 2.14714 2.17837 2.46587 3.18910 3.34877 3.39930 3.56828 3.60595 3.77074 4.01527 4.17490 4.39710 4.45046 4.94127 5.02010 5.15624 5.20490 5.40405 5.66882 5.69312 5.76822 6.16198 6.29891 6.49306 6.57006 6.88488 7.11695 7.45979 7.71695 7.98672 8.21908 8.27676 8.61760 8.93098 9.42424 10.78497 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.021202 B = 0.005374 C = 0.004871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.341292 B = 5209.213413 C = 5746.652955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.181 3.819 3 H 0.052 0.948 4 C -0.583 4.583 5 H 0.063 0.937 6 C 0.027 3.973 7 N -0.878 5.878 8 Si 1.076 2.924 9 H -0.280 1.280 10 H -0.283 1.283 11 H -0.283 1.283 12 O -0.338 6.338 13 C 0.516 3.484 14 O -0.485 6.485 15 C 0.005 3.995 16 N -0.436 5.436 17 C 0.179 3.821 18 O -0.190 6.190 19 C 0.083 3.917 20 C 0.054 3.946 21 C -0.211 4.211 22 C -0.069 4.069 23 O 0.128 5.872 24 N -0.259 5.259 25 H 0.032 0.968 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.275 0.725 29 H 0.262 0.738 30 H 0.176 0.824 31 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.840 1.591 -17.402 17.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.130 3.870 3 H 0.070 0.930 4 C -0.619 4.619 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.512 5.512 8 Si 0.902 3.098 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.209 1.209 12 O -0.254 6.254 13 C 0.358 3.642 14 O -0.374 6.374 15 C -0.118 4.118 16 N -0.164 5.164 17 C -0.049 4.049 18 O -0.076 6.076 19 C 0.027 3.973 20 C -0.101 4.101 21 C -0.233 4.233 22 C -0.149 4.149 23 O 0.047 5.953 24 N 0.046 4.954 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.277 0.723 30 H 0.194 0.806 31 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -0.161 1.412 -14.476 14.546 hybrid contribution -0.742 -0.006 -2.762 2.860 sum -0.903 1.405 -17.238 17.319 Atomic orbital electron populations 1.22012 0.97513 1.00548 1.00249 1.20983 0.90624 0.95418 0.79972 0.93027 1.22081 1.05389 1.27290 1.07137 0.91886 1.26248 0.92810 0.94574 1.04526 1.70744 1.37729 1.28496 1.14223 0.83459 0.76481 0.75974 0.73841 1.20474 1.20880 1.20918 1.87247 1.74839 1.43772 1.19552 1.19711 0.75742 0.85267 0.83469 1.90916 1.48106 1.14510 1.83838 1.21671 1.06558 0.89282 0.94269 1.70879 1.13150 1.16262 1.16088 1.28279 1.00315 0.88890 0.87391 1.84321 1.65075 1.17541 1.40671 1.19660 1.02420 0.87204 0.88029 1.20176 1.07527 0.90156 0.92242 1.22754 1.07694 0.93442 0.99365 1.25964 1.01867 0.99537 0.87544 1.85061 1.61355 1.26868 1.21994 1.75181 1.12888 0.90054 1.17238 0.94842 0.93318 0.91839 0.91408 0.72257 0.80641 0.76355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.53 37.15 0.35 -3.12 16 2 C 0.18 5.07 2.04 -27.89 -0.06 5.01 16 3 H 0.05 1.57 6.16 -51.93 -0.32 1.25 16 4 C -0.58 -17.09 8.69 -34.44 -0.30 -17.39 16 5 H 0.06 1.79 7.82 -52.48 -0.41 1.38 16 6 C 0.03 0.80 5.45 -17.82 -0.10 0.71 16 7 N -0.88 -27.56 13.56 55.43 0.75 -26.81 16 8 Si 1.08 25.19 29.91 -169.99 -5.08 20.10 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 O -0.34 -9.45 9.86 -40.77 -0.40 -9.85 16 13 C 0.52 13.19 7.93 34.36 0.27 13.46 16 14 O -0.49 -12.74 12.68 -19.30 -0.24 -12.98 16 15 C 0.00 0.10 7.12 -82.39 -0.59 -0.48 16 16 N -0.44 -8.33 11.33 -11.06 -0.13 -8.46 16 17 C 0.18 2.32 13.16 51.98 0.68 3.00 16 18 O -0.19 -2.66 10.74 5.37 0.06 -2.60 16 19 C 0.08 1.48 7.38 -35.60 -0.26 1.22 16 20 C 0.05 0.91 7.12 -82.60 -0.59 0.32 16 21 C -0.21 -2.36 11.15 -39.04 -0.44 -2.80 16 22 C -0.07 -0.65 12.27 29.64 0.36 -0.29 16 23 O 0.13 1.85 11.18 17.10 0.19 2.04 16 24 N -0.26 -4.86 8.71 33.27 0.29 -4.57 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 28 H 0.27 8.92 6.97 -40.82 -0.28 8.63 16 29 H 0.26 1.61 8.06 -52.48 -0.42 1.19 16 30 H 0.18 1.38 8.06 -52.48 -0.42 0.96 16 31 H 0.22 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 290.66 15.07 4.38 4.38 Total: -1.00 -37.97 290.66 -3.18 -41.15 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: -2.35 Total: -2.05 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -0.65 Total: -0.35 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.92 Total: -39.84 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.40 Total: -23.40 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.08 Total: 20.10 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -37.97 -3.18 -41.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850843541.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.342 kcal (2) G-P(sol) polarization free energy of solvation -37.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds