Wall clock time and date at job start Mon Mar 30 2020 23:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09006 * 109.47424 * 2 1 4 4 C 1.50697 * 109.47775 * 120.00731 * 2 1 3 5 5 H 1.08007 * 119.99542 * 25.70974 * 4 2 1 6 6 C 1.37875 * 120.00717 * 205.71358 * 4 2 1 7 7 N 1.31517 * 119.99625 * 353.02468 * 6 4 2 8 8 Si 1.86791 * 120.00414 * 173.02375 * 6 4 2 9 9 H 1.48500 * 109.47357 * 180.02562 * 8 6 4 10 10 H 1.48505 * 109.47374 * 299.99880 * 8 6 4 11 11 H 1.48501 * 109.47466 * 59.99930 * 8 6 4 12 12 O 1.45203 * 109.47055 * 240.00707 * 2 1 3 13 13 C 1.34800 * 117.00139 * 89.99568 * 12 2 1 14 14 O 1.21548 * 120.00247 * 0.02562 * 13 12 2 15 15 C 1.47188 * 120.00185 * 180.02562 * 13 12 2 16 16 N 1.35805 * 126.61296 * 0.02727 * 15 13 12 17 17 C 1.29979 * 108.73653 * 179.97438 * 16 15 13 18 18 O 1.33977 * 109.76267 * 359.97438 * 17 16 15 19 19 C 1.34740 * 108.23484 * 359.77065 * 18 17 16 20 20 C 1.47763 * 126.75285 * 180.24969 * 19 18 17 21 21 C 1.42479 * 126.96996 * 0.13453 * 20 19 18 22 22 C 1.35181 * 103.92776 * 180.02562 * 21 20 19 23 23 O 1.34072 * 106.73963 * 359.97438 * 22 21 20 24 24 N 1.20908 * 111.89792 * 359.70854 * 23 22 21 25 25 H 1.08998 * 109.47431 * 56.55679 * 1 2 3 26 26 H 1.09004 * 109.47341 * 176.56010 * 1 2 3 27 27 H 1.09006 * 109.46820 * 296.55464 * 1 2 3 28 28 H 0.97008 * 119.99665 * 354.60631 * 7 6 4 29 29 H 1.08003 * 125.11696 * 180.02562 * 17 16 15 30 30 H 1.08008 * 128.03903 * 359.97438 * 21 20 19 31 31 H 1.08002 * 126.62924 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 1.4179 -1.4571 1.7115 6 6 3.2765 -0.4077 1.7417 7 7 4.0801 0.3979 1.0822 8 14 3.8205 -1.1413 3.3711 9 1 5.1877 -0.6626 3.6976 10 1 2.8807 -0.7213 4.4415 11 1 3.8252 -2.6229 3.2700 12 8 2.0139 -0.6844 -1.1857 13 6 2.2178 0.0674 -2.2858 14 8 1.9975 1.2624 -2.2548 15 6 2.7072 -0.5587 -3.5247 16 7 2.9949 -1.8731 -3.7091 17 6 3.3990 -2.0444 -4.9326 18 8 3.3902 -0.8720 -5.5809 19 6 2.9568 0.0777 -4.7290 20 6 2.7849 1.5159 -5.0213 21 6 3.0406 2.1754 -6.2581 22 6 2.7312 3.4673 -6.0080 23 8 2.3319 3.5282 -4.7295 24 7 2.3599 2.4435 -4.1962 25 1 -0.3634 0.5663 -0.8575 26 1 -0.3634 -1.0258 -0.0617 27 1 -0.3633 0.4594 0.9193 28 1 3.8309 0.7166 0.2005 29 1 3.6962 -2.9898 -5.3621 30 1 3.3993 1.7437 -7.1809 31 1 2.7928 4.2911 -6.7038 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850843541.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:06 Heat of formation + Delta-G solvation = -16.002028 kcal Electronic energy + Delta-G solvation = -21360.058876 eV Core-core repulsion = 17804.654534 eV Total energy + Delta-G solvation = -3555.404342 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.078 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -46.12675 -44.58596 -41.06608 -37.67840 -36.23306 -35.57782 -35.21929 -32.89877 -32.27769 -31.23013 -27.06278 -26.67776 -25.11895 -23.99406 -23.47083 -22.59488 -21.39369 -19.81482 -19.33991 -18.93917 -18.87172 -18.00526 -17.78774 -17.14199 -16.71500 -16.29111 -15.72665 -15.67704 -15.51820 -14.63311 -14.51673 -14.17364 -13.93668 -13.34904 -13.11714 -12.74687 -12.67873 -12.55877 -12.36881 -12.22933 -11.97165 -11.94805 -11.61157 -11.41379 -10.82113 -10.76035 -10.72340 -9.97944 -8.92442 -6.73992 -0.76560 0.65036 0.84011 0.91459 1.28188 1.49071 1.53801 1.79390 1.84600 2.02019 2.40084 2.47567 2.91368 2.98569 3.09317 3.30148 3.73541 3.92472 4.06863 4.20927 4.24042 4.36364 4.44348 4.56068 4.66240 4.78460 4.98352 5.00259 5.09171 5.58008 5.78093 5.95806 6.19935 6.23490 6.91925 7.17604 7.23456 8.42302 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.021202 B = 0.005374 C = 0.004871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.341292 B = 5209.213413 C = 5746.652955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.177 3.823 3 H 0.014 0.986 4 C -0.603 4.603 5 H 0.071 0.929 6 C -0.024 4.024 7 N -0.907 5.907 8 Si 1.129 2.871 9 H -0.280 1.280 10 H -0.256 1.256 11 H -0.264 1.264 12 O -0.359 6.359 13 C 0.506 3.494 14 O -0.504 6.504 15 C -0.052 4.052 16 N -0.492 5.492 17 C 0.223 3.777 18 O -0.169 6.169 19 C 0.105 3.895 20 C 0.014 3.986 21 C -0.203 4.203 22 C -0.042 4.042 23 O 0.125 5.875 24 N -0.324 5.324 25 H 0.036 0.964 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.251 0.749 29 H 0.329 0.671 30 H 0.214 0.786 31 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.400 0.886 -19.733 19.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.125 3.875 3 H 0.032 0.968 4 C -0.639 4.639 5 H 0.089 0.911 6 C -0.225 4.225 7 N -0.542 5.542 8 Si 0.947 3.053 9 H -0.206 1.206 10 H -0.181 1.181 11 H -0.189 1.189 12 O -0.276 6.276 13 C 0.350 3.650 14 O -0.393 6.393 15 C -0.172 4.172 16 N -0.219 5.219 17 C -0.004 4.004 18 O -0.055 6.055 19 C 0.047 3.953 20 C -0.140 4.140 21 C -0.224 4.224 22 C -0.121 4.121 23 O 0.042 5.958 24 N -0.019 5.019 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.344 0.656 30 H 0.231 0.769 31 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 0.247 0.688 -16.815 16.830 hybrid contribution -0.887 0.278 -2.326 2.505 sum -0.640 0.966 -19.140 19.175 Atomic orbital electron populations 1.21900 0.94594 1.01450 1.01207 1.20898 0.92904 0.93320 0.80332 0.96777 1.22416 1.05843 1.27434 1.08189 0.91123 1.28011 0.92870 0.93788 1.07800 1.70901 1.38707 1.30976 1.13628 0.82849 0.76456 0.76153 0.69871 1.20569 1.18064 1.18896 1.87117 1.75816 1.44135 1.20491 1.20250 0.75371 0.85258 0.84118 1.90888 1.48911 1.15163 1.84339 1.21176 1.10969 0.91183 0.93855 1.70762 1.16267 1.15375 1.19489 1.29721 0.95496 0.89848 0.85380 1.84391 1.64415 1.17257 1.39415 1.19825 1.00024 0.88327 0.87112 1.20626 1.09127 0.89640 0.94582 1.23210 1.07270 0.93412 0.98540 1.27125 0.98392 1.00779 0.85796 1.84977 1.61036 1.25396 1.24349 1.75196 1.15307 0.91625 1.19775 0.94475 0.92223 0.90319 0.93917 0.65638 0.76881 0.70316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.59 9.53 71.98 0.69 -5.90 16 2 C 0.18 10.46 2.04 29.84 0.06 10.52 16 3 H 0.01 0.94 6.16 -2.38 -0.01 0.92 16 4 C -0.60 -36.48 8.69 25.60 0.22 -36.26 16 5 H 0.07 4.06 7.82 -2.91 -0.02 4.04 16 6 C -0.02 -1.43 5.45 84.65 0.46 -0.97 16 7 N -0.91 -59.72 13.56 21.45 0.29 -59.43 16 8 Si 1.13 50.91 29.91 68.60 2.05 52.96 16 9 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 10 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 11 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 12 O -0.36 -21.33 9.86 -57.12 -0.56 -21.89 16 13 C 0.51 27.69 7.93 70.17 0.56 28.25 16 14 O -0.50 -28.54 12.68 19.68 0.25 -28.29 16 15 C -0.05 -2.32 7.12 40.94 0.29 -2.03 16 16 N -0.49 -18.85 11.33 -303.83 -3.44 -22.29 16 17 C 0.22 5.15 13.16 130.52 1.72 6.87 16 18 O -0.17 -4.30 10.74 -3.70 -0.04 -4.34 16 19 C 0.10 3.76 7.38 24.85 0.18 3.95 16 20 C 0.01 0.46 7.12 42.81 0.30 0.76 16 21 C -0.20 -3.93 11.15 22.62 0.25 -3.68 16 22 C -0.04 -0.64 12.27 67.11 0.82 0.18 16 23 O 0.12 3.55 11.18 71.35 0.80 4.35 16 24 N -0.32 -12.62 8.71 -49.50 -0.43 -13.05 16 25 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 27 H 0.08 3.55 8.14 -2.38 -0.02 3.53 16 28 H 0.25 17.51 6.97 -92.70 -0.65 16.86 16 29 H 0.33 2.23 8.06 -2.91 -0.02 2.20 16 30 H 0.21 2.31 8.06 -2.91 -0.02 2.29 16 31 H 0.28 0.43 8.06 -2.91 -0.02 0.41 16 Total: -1.00 -93.27 290.66 5.78 -87.49 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: 1.31 Total: 2.81 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: 5.56 Total: 1.69 kcal Atomic # 7 Polarization: -91.18 SS G_CDS: -3.58 Total: -94.77 kcal Atomic # 8 Polarization: -50.63 SS G_CDS: 0.44 Total: -50.19 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 2.05 Total: 52.96 kcal Total: -93.27 5.78 -87.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850843541.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.492 kcal (2) G-P(sol) polarization free energy of solvation -93.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds