Wall clock time and date at job start Mon Mar 30 2020 23:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46496 * 119.99867 * 2 1 4 4 C 1.50702 * 109.46994 * 275.12470 * 3 2 1 5 5 H 1.08001 * 119.99773 * 355.08295 * 4 3 2 6 6 C 1.37872 * 120.00005 * 175.08503 * 4 3 2 7 7 N 1.31523 * 120.00115 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00215 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.46924 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47493 * 119.99856 * 8 6 4 11 11 H 1.48509 * 109.47347 * 240.00184 * 8 6 4 12 12 S 1.65596 * 119.99543 * 179.97438 * 2 1 3 13 13 O 1.42094 * 106.40779 * 17.90591 * 12 2 1 14 14 O 1.42101 * 106.39642 * 150.82531 * 12 2 1 15 15 N 1.65602 * 107.22126 * 264.36170 * 12 2 1 16 16 C 1.46501 * 119.99699 * 64.44002 * 15 12 2 17 17 H 1.09003 * 110.62254 * 21.11689 * 16 15 12 18 18 C 1.54369 * 110.70106 * 257.83758 * 16 15 12 19 19 O 1.45940 * 105.06905 * 223.79162 * 18 16 15 20 20 C 1.34560 * 108.40252 * 32.44243 * 19 18 16 21 21 O 1.20827 * 125.94807 * 146.68681 * 20 19 18 22 22 C 1.51512 * 108.11039 * 326.66168 * 20 19 18 23 23 H 1.08997 * 109.46814 * 270.00370 * 1 2 3 24 24 H 1.09006 * 109.46881 * 30.00068 * 1 2 3 25 25 H 1.08995 * 109.47293 * 150.00376 * 1 2 3 26 26 H 1.09004 * 109.47476 * 35.12369 * 3 2 1 27 27 H 1.09002 * 109.46963 * 155.12583 * 3 2 1 28 28 H 0.96997 * 119.99957 * 180.02562 * 7 6 4 29 29 H 0.97001 * 120.00462 * 244.44213 * 15 12 2 30 30 H 1.09007 * 110.32367 * 342.69188 * 18 16 15 31 31 H 1.09004 * 110.32036 * 104.89479 * 18 16 15 32 32 H 1.08993 * 110.40407 * 261.59488 * 22 20 19 33 33 H 1.08996 * 110.40244 * 139.17084 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3388 1.7672 -1.4152 5 1 1.9952 1.1588 -2.2387 6 6 2.9066 2.9998 -1.6584 7 7 3.3245 3.7408 -0.6554 8 14 3.0810 3.6180 -3.4125 9 1 2.5375 2.6037 -4.3511 10 1 2.3288 4.8891 -3.5665 11 1 4.5161 3.8523 -3.7144 12 16 2.2930 -1.4342 0.0006 13 8 1.3703 -2.4304 -0.4180 14 8 3.5244 -1.1868 -0.6640 15 7 2.6727 -1.7804 1.5749 16 6 1.6065 -2.0420 2.5450 17 1 0.6886 -2.3370 2.0364 18 6 1.3666 -0.8065 3.4387 19 8 1.2363 -1.3367 4.7921 20 6 2.0216 -2.4240 4.8998 21 8 2.6078 -2.7800 5.8946 22 6 2.0425 -3.1248 3.5567 23 1 -0.3633 0.0001 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5137 26 1 1.6513 2.0037 0.5913 27 1 3.1866 1.1172 0.4323 28 1 3.7237 4.6081 -0.8266 29 1 3.6009 -1.8099 1.8548 30 1 2.2157 -0.1254 3.3790 31 1 0.4499 -0.2968 3.1419 32 1 1.3377 -3.9562 3.5508 33 1 3.0483 -3.4765 3.3271 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867285778.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:57 Heat of formation + Delta-G solvation = -149.614078 kcal Electronic energy + Delta-G solvation = -20541.170370 eV Core-core repulsion = 17115.416126 eV Total energy + Delta-G solvation = -3425.754244 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.081 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.13096 -37.81022 -36.81790 -35.68579 -35.46425 -35.36569 -32.52898 -30.54500 -28.09738 -27.83097 -25.19542 -22.50001 -22.33942 -21.51847 -19.46958 -17.73587 -17.45855 -16.89108 -16.72175 -16.68214 -16.32472 -15.78868 -15.20630 -14.46954 -14.04505 -13.70475 -13.53962 -13.39406 -13.37660 -12.84473 -12.40773 -12.27186 -12.09275 -11.78446 -11.67126 -11.51897 -11.27614 -11.18736 -10.94228 -10.80966 -10.62243 -10.55306 -10.11574 -9.85875 -9.67274 -8.53771 -8.23266 -6.15330 -4.19421 0.97509 1.67858 3.09954 3.21258 3.25921 3.34181 3.39403 3.70970 3.94216 3.98158 4.32618 4.38047 4.54121 4.80441 5.00576 5.10515 5.20519 5.26101 5.39672 5.49009 5.73039 5.84295 6.15693 6.41373 6.44525 6.80303 7.08514 7.17643 7.27205 7.44069 7.82330 8.09852 8.83932 9.46686 10.93200 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.027460 B = 0.005259 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.416900 B = 5322.552962 C = 5733.243221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.995 5.995 3 C 0.256 3.744 4 C -0.528 4.528 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 S 2.779 3.221 13 O -0.994 6.994 14 O -0.957 6.957 15 N -1.124 6.124 16 C 0.123 3.877 17 H 0.124 0.876 18 C 0.035 3.965 19 O -0.350 6.350 20 C 0.487 3.513 21 O -0.451 6.451 22 C -0.193 4.193 23 H 0.038 0.962 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.040 0.960 27 H 0.033 0.967 28 H 0.264 0.736 29 H 0.417 0.583 30 H 0.099 0.901 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.460 -10.037 7.161 13.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.839 5.839 3 C 0.134 3.866 4 C -0.568 4.568 5 H 0.080 0.920 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.208 1.208 12 S 2.786 3.214 13 O -0.977 6.977 14 O -0.940 6.940 15 N -0.882 5.882 16 C 0.014 3.986 17 H 0.142 0.858 18 C -0.041 4.041 19 O -0.267 6.267 20 C 0.327 3.673 21 O -0.333 6.333 22 C -0.233 4.233 23 H 0.057 0.943 24 H 0.100 0.900 25 H 0.086 0.914 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.250 0.750 30 H 0.117 0.883 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.201 -10.454 7.016 13.622 hybrid contribution 0.502 0.751 -0.603 1.086 sum -4.698 -9.704 6.414 12.545 Atomic orbital electron populations 1.21409 0.79915 1.03880 1.00213 1.57631 1.14417 1.23271 1.88561 1.19086 0.90765 0.78751 0.97959 1.21509 1.40148 1.02458 0.92667 0.92036 1.24933 0.95078 0.96490 0.97535 1.69919 1.40989 1.11942 1.30681 0.86448 0.77970 0.78578 0.84487 1.19618 1.20953 1.20806 1.02112 0.73542 0.73043 0.72691 1.93539 1.65247 1.58607 1.80316 1.93670 1.44701 1.85218 1.70448 1.56496 1.14473 1.87503 1.29682 1.21807 0.92357 0.93710 0.90729 0.85839 1.24857 1.06091 0.96383 0.76739 1.87309 1.60645 1.44049 1.34697 1.23205 0.74192 0.80330 0.89584 1.90715 1.37767 1.68054 1.36715 1.23248 1.06835 1.00236 0.92954 0.94345 0.90047 0.91375 0.94178 0.94900 0.92663 0.74960 0.88255 0.85998 0.85572 0.86267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.33 10.65 59.85 0.64 1.96 16 2 N -1.00 -17.73 3.23 -123.05 -0.40 -18.13 16 3 C 0.26 5.78 5.07 -5.19 -0.03 5.75 16 4 C -0.53 -13.97 9.38 -34.44 -0.32 -14.30 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 7 N -0.90 -25.00 13.29 55.43 0.74 -24.27 16 8 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 9 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 S 2.78 46.96 6.04 -107.50 -0.65 46.31 16 13 O -0.99 -17.66 16.07 -57.17 -0.92 -18.58 16 14 O -0.96 -20.59 17.32 -57.17 -0.99 -21.58 16 15 N -1.12 -13.19 5.49 -3.63 -0.02 -13.21 16 16 C 0.12 1.17 3.89 -66.44 -0.26 0.91 16 17 H 0.12 1.04 7.60 -51.93 -0.39 0.64 16 18 C 0.04 0.34 7.60 37.87 0.29 0.63 16 19 O -0.35 -4.05 11.17 -39.73 -0.44 -4.49 16 20 C 0.49 5.66 8.50 36.40 0.31 5.97 16 21 O -0.45 -6.72 18.00 -18.32 -0.33 -7.05 16 22 C -0.19 -1.61 6.72 -26.72 -0.18 -1.79 16 23 H 0.04 0.41 7.71 -51.93 -0.40 0.01 16 24 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 25 H 0.07 0.93 7.00 -51.93 -0.36 0.57 16 26 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 27 H 0.03 0.78 7.76 -51.93 -0.40 0.38 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.42 4.23 8.75 -34.48 -0.30 3.92 16 30 H 0.10 1.01 8.02 -51.93 -0.42 0.59 16 31 H 0.12 0.98 7.71 -51.93 -0.40 0.58 16 32 H 0.13 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.12 0.89 7.85 -51.93 -0.41 0.48 16 LS Contribution 301.57 15.07 4.54 4.54 Total: -1.00 -34.18 301.57 -7.03 -41.21 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -3.89 Total: -1.54 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 0.35 Total: 0.72 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: 0.32 Total: -55.60 kcal Atomic # 8 Polarization: -49.02 SS G_CDS: -2.68 Total: -51.70 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 46.96 SS G_CDS: -0.65 Total: 46.31 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.18 -7.03 -41.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867285778.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.403 kcal (2) G-P(sol) polarization free energy of solvation -34.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds