Wall clock time and date at job start Mon Mar 30 2020 23:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46496 * 119.99867 * 2 1 4 4 C 1.50702 * 109.46994 * 275.12470 * 3 2 1 5 5 H 1.08001 * 119.99773 * 355.08295 * 4 3 2 6 6 C 1.37872 * 120.00005 * 175.08503 * 4 3 2 7 7 N 1.31523 * 120.00115 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00215 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.46924 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47493 * 119.99856 * 8 6 4 11 11 H 1.48509 * 109.47347 * 240.00184 * 8 6 4 12 12 S 1.65596 * 119.99543 * 179.97438 * 2 1 3 13 13 O 1.42094 * 106.40779 * 17.90591 * 12 2 1 14 14 O 1.42101 * 106.39642 * 150.82531 * 12 2 1 15 15 N 1.65602 * 107.22126 * 264.36170 * 12 2 1 16 16 C 1.46501 * 119.99699 * 64.44002 * 15 12 2 17 17 H 1.09003 * 110.62254 * 21.11689 * 16 15 12 18 18 C 1.54369 * 110.70106 * 257.83758 * 16 15 12 19 19 O 1.45940 * 105.06905 * 223.79162 * 18 16 15 20 20 C 1.34560 * 108.40252 * 32.44243 * 19 18 16 21 21 O 1.20827 * 125.94807 * 146.68681 * 20 19 18 22 22 C 1.51512 * 108.11039 * 326.66168 * 20 19 18 23 23 H 1.08997 * 109.46814 * 270.00370 * 1 2 3 24 24 H 1.09006 * 109.46881 * 30.00068 * 1 2 3 25 25 H 1.08995 * 109.47293 * 150.00376 * 1 2 3 26 26 H 1.09004 * 109.47476 * 35.12369 * 3 2 1 27 27 H 1.09002 * 109.46963 * 155.12583 * 3 2 1 28 28 H 0.96997 * 119.99957 * 180.02562 * 7 6 4 29 29 H 0.97001 * 120.00462 * 244.44213 * 15 12 2 30 30 H 1.09007 * 110.32367 * 342.69188 * 18 16 15 31 31 H 1.09004 * 110.32036 * 104.89479 * 18 16 15 32 32 H 1.08993 * 110.40407 * 261.59488 * 22 20 19 33 33 H 1.08996 * 110.40244 * 139.17084 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3388 1.7672 -1.4152 5 1 1.9952 1.1588 -2.2387 6 6 2.9066 2.9998 -1.6584 7 7 3.3245 3.7408 -0.6554 8 14 3.0810 3.6180 -3.4125 9 1 2.5375 2.6037 -4.3511 10 1 2.3288 4.8891 -3.5665 11 1 4.5161 3.8523 -3.7144 12 16 2.2930 -1.4342 0.0006 13 8 1.3703 -2.4304 -0.4180 14 8 3.5244 -1.1868 -0.6640 15 7 2.6727 -1.7804 1.5749 16 6 1.6065 -2.0420 2.5450 17 1 0.6886 -2.3370 2.0364 18 6 1.3666 -0.8065 3.4387 19 8 1.2363 -1.3367 4.7921 20 6 2.0216 -2.4240 4.8998 21 8 2.6078 -2.7800 5.8946 22 6 2.0425 -3.1248 3.5567 23 1 -0.3633 0.0001 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5137 26 1 1.6513 2.0037 0.5913 27 1 3.1866 1.1172 0.4323 28 1 3.7237 4.6081 -0.8266 29 1 3.6009 -1.8099 1.8548 30 1 2.2157 -0.1254 3.3790 31 1 0.4499 -0.2968 3.1419 32 1 1.3377 -3.9562 3.5508 33 1 3.0483 -3.4765 3.3271 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867285778.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:54 Heat of formation + Delta-G solvation = -176.631735 kcal Electronic energy + Delta-G solvation = -20542.341943 eV Core-core repulsion = 17115.416126 eV Total energy + Delta-G solvation = -3426.925817 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.081 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.99965 -38.79371 -38.25642 -37.18208 -36.84123 -36.42778 -34.46865 -31.42187 -29.63301 -28.81831 -26.72089 -24.17990 -23.24966 -22.37344 -20.65304 -19.10542 -18.53308 -18.36056 -18.12240 -17.68957 -17.42572 -17.05146 -16.59409 -16.05680 -15.18719 -14.96898 -14.73478 -14.52329 -14.29524 -14.06701 -13.91397 -13.57259 -13.28917 -13.12878 -13.01732 -12.90832 -12.82842 -12.74961 -12.43492 -12.37677 -11.93145 -11.79089 -11.67396 -11.45281 -10.67242 -10.56637 -9.75719 -8.18718 -6.28893 -0.35493 0.79962 1.39788 1.43264 1.53672 1.95619 2.32513 2.41994 2.60328 2.99264 3.13389 3.17398 3.46886 3.61696 3.83088 4.10240 4.25987 4.34424 4.57261 4.73055 4.82632 4.88523 4.93309 5.17736 5.26984 5.52356 5.60004 5.73252 5.84692 6.04344 6.15294 6.29089 6.80577 7.40228 8.88347 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.027460 B = 0.005259 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.416900 B = 5322.552962 C = 5733.243221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.001 6.001 3 C 0.271 3.729 4 C -0.544 4.544 5 H 0.050 0.950 6 C 0.014 3.986 7 N -0.924 5.924 8 Si 0.950 3.050 9 H -0.271 1.271 10 H -0.273 1.273 11 H -0.282 1.282 12 S 2.800 3.200 13 O -1.000 7.000 14 O -1.008 7.008 15 N -1.109 6.109 16 C 0.119 3.881 17 H 0.144 0.856 18 C 0.033 3.967 19 O -0.362 6.362 20 C 0.487 3.513 21 O -0.492 6.492 22 C -0.179 4.179 23 H 0.081 0.919 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.036 0.964 27 H 0.018 0.982 28 H 0.266 0.734 29 H 0.425 0.575 30 H 0.092 0.908 31 H 0.143 0.857 32 H 0.157 0.843 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.569 -10.854 7.105 14.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.843 5.843 3 C 0.148 3.852 4 C -0.584 4.584 5 H 0.069 0.931 6 C -0.185 4.185 7 N -0.564 5.564 8 Si 0.776 3.224 9 H -0.195 1.195 10 H -0.198 1.198 11 H -0.208 1.208 12 S 2.808 3.192 13 O -0.983 6.983 14 O -0.992 6.992 15 N -0.871 5.871 16 C 0.011 3.989 17 H 0.162 0.838 18 C -0.043 4.043 19 O -0.280 6.280 20 C 0.329 3.671 21 O -0.377 6.377 22 C -0.219 4.219 23 H 0.100 0.900 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.054 0.946 27 H 0.036 0.964 28 H 0.075 0.925 29 H 0.262 0.738 30 H 0.110 0.890 31 H 0.161 0.839 32 H 0.175 0.825 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.341 -11.275 6.944 14.681 hybrid contribution 0.795 0.957 -0.527 1.352 sum -5.545 -10.317 6.416 13.356 Atomic orbital electron populations 1.21675 0.77803 1.03714 1.03029 1.57471 1.15825 1.21774 1.89217 1.18626 0.90543 0.80460 0.95620 1.21892 1.39677 1.02482 0.94325 0.93141 1.25649 0.95069 0.96947 1.00868 1.69992 1.41869 1.12333 1.32224 0.85622 0.77852 0.78359 0.80553 1.19543 1.19808 1.20804 1.01240 0.72224 0.72529 0.73247 1.93527 1.65259 1.58424 1.81116 1.93601 1.47014 1.85831 1.72788 1.56006 1.15748 1.86900 1.28471 1.22079 0.92223 0.94114 0.90466 0.83804 1.24993 1.06968 0.96371 0.75962 1.87297 1.60441 1.44390 1.35832 1.23706 0.73067 0.80205 0.90118 1.90697 1.39539 1.68978 1.38500 1.23262 1.08454 1.00187 0.89984 0.90036 0.91345 0.90461 0.94578 0.96428 0.92501 0.73834 0.88994 0.83923 0.82515 0.85060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.19 10.65 127.77 1.36 3.55 16 2 N -1.00 -34.36 3.23 -543.20 -1.75 -36.12 16 3 C 0.27 12.20 5.07 85.63 0.43 12.64 16 4 C -0.54 -28.90 9.38 25.60 0.24 -28.66 16 5 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 6 C 0.01 0.76 5.46 84.65 0.46 1.22 16 7 N -0.92 -51.72 13.29 21.45 0.28 -51.44 16 8 Si 0.95 43.10 29.54 68.60 2.03 45.12 16 9 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 12 S 2.80 90.74 6.04 -56.49 -0.34 90.40 16 13 O -1.00 -33.24 16.07 -128.00 -2.06 -35.30 16 14 O -1.01 -43.41 17.32 -128.00 -2.22 -45.62 16 15 N -1.11 -23.62 5.49 -165.39 -0.91 -24.53 16 16 C 0.12 1.88 3.89 45.95 0.18 2.05 16 17 H 0.14 1.78 7.60 -2.39 -0.02 1.76 16 18 C 0.03 0.55 7.60 72.45 0.55 1.10 16 19 O -0.36 -7.72 11.17 -55.05 -0.61 -8.34 16 20 C 0.49 10.49 8.50 71.49 0.61 11.10 16 21 O -0.49 -14.39 18.00 21.55 0.39 -14.00 16 22 C -0.18 -2.42 6.72 30.60 0.21 -2.21 16 23 H 0.08 1.44 7.71 -2.39 -0.02 1.42 16 24 H 0.07 1.99 8.07 -2.38 -0.02 1.97 16 25 H 0.08 1.91 7.00 -2.39 -0.02 1.89 16 26 H 0.04 1.65 8.11 -2.38 -0.02 1.63 16 27 H 0.02 0.85 7.76 -2.39 -0.02 0.83 16 28 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 29 H 0.43 7.89 8.75 -96.74 -0.85 7.04 16 30 H 0.09 1.71 8.02 -2.38 -0.02 1.69 16 31 H 0.14 1.80 7.71 -2.38 -0.02 1.78 16 32 H 0.16 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.13 1.54 7.85 -2.39 -0.02 1.52 16 Total: -1.00 -73.90 301.57 -0.86 -74.75 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 0.29 Total: 4.28 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 4.04 Total: 0.79 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -2.38 Total: -112.09 kcal Atomic # 8 Polarization: -98.76 SS G_CDS: -4.50 Total: -103.26 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 90.74 SS G_CDS: -0.34 Total: 90.40 kcal Total: -73.90 -0.86 -74.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867285778.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.877 kcal (2) G-P(sol) polarization free energy of solvation -73.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds