Wall clock time and date at job start Tue Mar 31 2020 01:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47029 * 2 1 4 4 C 1.47199 * 109.47276 * 239.99672 * 2 1 3 5 5 N 2.60803 * 109.47206 * 239.99640 * 2 1 3 6 6 C 1.53003 * 109.47337 * 119.99403 * 2 1 3 7 7 N 1.46498 * 109.47445 * 300.00440 * 6 2 1 8 8 C 1.34773 * 120.00308 * 179.97438 * 7 6 2 9 9 O 1.21761 * 120.00011 * 359.97438 * 8 7 6 10 10 C 1.46234 * 120.00188 * 179.97438 * 8 7 6 11 11 S 1.75667 * 125.22974 * 0.02701 * 10 8 7 12 12 C 1.75471 * 92.09340 * 179.97438 * 11 10 8 13 13 C 1.32766 * 111.36155 * 359.73595 * 12 11 10 14 14 C 1.39550 * 125.23004 * 179.97438 * 10 8 7 15 15 C 1.40538 * 123.71114 * 0.02562 * 14 10 8 16 16 H 1.07995 * 120.00313 * 24.76107 * 15 14 10 17 17 C 1.40309 * 119.99881 * 204.75621 * 15 14 10 18 18 N 1.30643 * 120.00210 * 195.55488 * 17 15 14 19 19 Si 1.86803 * 119.99586 * 15.55915 * 17 15 14 20 20 H 1.48500 * 109.46999 * 263.28232 * 19 17 15 21 21 H 1.48497 * 109.47431 * 23.28650 * 19 17 15 22 22 H 1.48505 * 109.47091 * 143.28751 * 19 17 15 23 23 H 1.09004 * 109.47071 * 299.99837 * 1 2 3 24 24 H 1.08996 * 109.47604 * 60.00040 * 1 2 3 25 25 H 1.09003 * 109.46927 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47038 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47087 * 299.99696 * 3 2 1 28 28 H 1.08994 * 109.47125 * 59.99986 * 3 2 1 29 29 H 1.08998 * 109.47312 * 179.97438 * 6 2 1 30 30 H 1.09004 * 109.46814 * 60.00425 * 6 2 1 31 31 H 0.97003 * 119.99988 * 359.97438 * 7 6 2 32 32 H 1.08004 * 124.31449 * 179.97438 * 12 11 10 33 33 H 1.08001 * 122.77944 * 180.23814 * 13 12 11 34 34 H 0.97000 * 119.99615 * 353.17170 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0206 -0.6940 -1.2018 5 7 2.3993 -1.2296 -2.1294 6 6 2.0400 -0.7211 1.2493 7 7 1.5516 -0.0305 2.4455 8 6 1.8768 -0.4912 3.6696 9 8 2.5762 -1.4816 3.7814 10 6 1.3898 0.1985 4.8635 11 16 0.3760 1.6332 4.8624 12 6 0.3381 1.6862 6.6159 13 6 1.0361 0.6885 7.1451 14 6 1.6581 -0.1824 6.1790 15 6 2.4439 -1.2954 6.5239 16 1 3.1863 -1.6671 5.8333 17 6 2.2638 -1.9235 7.7656 18 7 3.1714 -2.7465 8.2190 19 14 0.7262 -1.5829 8.7702 20 1 1.0180 -0.5359 9.7821 21 1 -0.3587 -1.1139 7.8713 22 1 0.2972 -2.8282 9.4562 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 3.1300 -0.7215 1.2491 30 1 1.6767 -1.7488 1.2493 31 1 0.9942 0.7583 2.3564 32 1 -0.1892 2.4329 7.1912 33 1 1.1326 0.5433 8.2110 34 1 3.9201 -3.0004 7.6569 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867318691.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:13 Heat of formation + Delta-G solvation = -1.432823 kcal Electronic energy + Delta-G solvation = -18789.166406 eV Core-core repulsion = 15812.979798 eV Total energy + Delta-G solvation = -2976.186608 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.20793 -37.69692 -36.30518 -35.26955 -33.40846 -32.42178 -29.23918 -27.58732 -27.27605 -25.59560 -22.72054 -21.66438 -20.27898 -19.29187 -18.38370 -16.76644 -16.32068 -15.42032 -15.12539 -14.91398 -14.65183 -13.95922 -13.77404 -13.62303 -13.50463 -13.27298 -12.89482 -12.81411 -12.38705 -12.21093 -12.02602 -11.93986 -11.66396 -11.61691 -11.27205 -11.15454 -11.00940 -10.84777 -10.12214 -10.03561 -9.65627 -9.35085 -8.59566 -8.42530 -7.85516 -7.60506 -7.30973 -4.67064 1.84652 2.58813 2.64066 2.76708 2.94323 3.16539 3.30889 3.40677 3.50164 3.54346 3.80090 4.17157 4.31753 4.53650 4.62982 4.72347 5.07046 5.38329 5.51539 5.52584 5.59897 5.69848 5.79586 5.87766 5.91938 6.02690 6.08585 6.57200 6.81521 7.02250 7.12727 7.28494 7.40430 7.41123 8.05576 8.26782 8.43569 8.63006 9.44175 9.71645 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.024889 B = 0.005034 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.713716 B = 5561.116950 C = 6343.473060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.022 3.978 3 C -0.142 4.142 4 C 0.224 3.776 5 N -0.434 5.434 6 C 0.142 3.858 7 N -0.747 5.747 8 C 0.601 3.399 9 O -0.559 6.559 10 C -0.432 4.432 11 S -0.024 6.024 12 C -0.175 4.175 13 C -0.161 4.161 14 C 0.112 3.888 15 C -0.423 4.423 16 H 0.110 0.890 17 C 0.034 3.966 18 N -0.782 5.782 19 Si 1.067 2.933 20 H -0.273 1.273 21 H -0.255 1.255 22 H -0.282 1.282 23 H 0.081 0.919 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.391 0.609 32 H 0.145 0.855 33 H 0.125 0.875 34 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.693 8.609 -6.770 12.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.018 3.982 3 C -0.201 4.201 4 C -0.095 4.095 5 N -0.108 5.108 6 C 0.016 3.984 7 N -0.403 5.403 8 C 0.398 3.602 9 O -0.441 6.441 10 C -0.551 4.551 11 S 0.232 5.768 12 C -0.309 4.309 13 C -0.195 4.195 14 C 0.101 3.899 15 C -0.454 4.454 16 H 0.127 0.873 17 C -0.190 4.190 18 N -0.403 5.403 19 Si 0.892 3.108 20 H -0.200 1.200 21 H -0.180 1.180 22 H -0.209 1.209 23 H 0.099 0.901 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.226 0.774 32 H 0.163 0.837 33 H 0.143 0.857 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.839 7.571 -7.797 12.841 hybrid contribution 1.116 0.058 -0.025 1.118 sum -5.722 7.629 -7.821 12.334 Atomic orbital electron populations 1.21914 0.90920 1.03747 1.03496 1.18499 0.97395 0.95343 0.86955 1.21913 1.02341 0.92316 1.03492 1.28855 0.93143 0.93340 0.94189 1.81200 1.08866 1.09065 1.11686 1.20997 0.99369 0.95854 0.82215 1.45779 1.56883 1.32844 1.04786 1.16756 0.79370 0.83126 0.80993 1.90700 1.40279 1.27184 1.85974 1.22398 1.27200 1.10323 0.95164 1.82699 1.57474 1.32947 1.03656 1.24915 1.05442 1.03098 0.97451 1.21425 1.01485 0.96959 0.99585 1.17919 0.89909 0.93149 0.88891 1.21041 1.14436 1.08105 1.01815 0.87264 1.27670 1.01878 0.93286 0.96201 1.70400 1.08076 1.24905 1.36931 0.83779 0.74689 0.76601 0.75775 1.19968 1.17953 1.20897 0.90064 0.91495 0.91300 0.91341 0.91496 0.90075 0.91327 0.91268 0.77429 0.83689 0.85733 0.89240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.26 37.15 0.31 -0.97 16 2 C 0.02 0.23 0.70 -157.30 -0.11 0.12 16 3 C -0.14 -1.27 8.26 37.16 0.31 -0.96 16 4 C 0.22 2.80 13.86 -20.76 -0.29 2.51 16 5 N -0.43 -6.43 18.54 42.15 0.78 -5.65 16 6 C 0.14 2.04 4.52 -4.04 -0.02 2.02 16 7 N -0.75 -12.45 4.95 -61.75 -0.31 -12.75 16 8 C 0.60 13.57 7.76 -13.05 -0.10 13.46 16 9 O -0.56 -14.78 14.47 5.13 0.07 -14.70 16 10 C -0.43 -9.96 6.51 -35.88 -0.23 -10.19 16 11 S -0.02 -0.44 22.25 -107.50 -2.39 -2.84 16 12 C -0.17 -3.24 11.07 28.86 0.32 -2.92 16 13 C -0.16 -3.44 7.36 -39.13 -0.29 -3.73 16 14 C 0.11 2.76 5.30 -106.21 -0.56 2.20 16 15 C -0.42 -11.27 8.88 -37.94 -0.34 -11.60 16 16 H 0.11 3.22 6.28 -52.49 -0.33 2.89 16 17 C 0.03 0.84 5.49 -17.28 -0.09 0.75 16 18 N -0.78 -20.00 13.64 55.57 0.76 -19.24 16 19 Si 1.07 21.96 24.85 -169.99 -4.22 17.74 16 20 H -0.27 -5.14 6.81 56.52 0.38 -4.76 16 21 H -0.26 -5.18 6.40 56.52 0.36 -4.81 16 22 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 23 H 0.08 0.71 6.86 -51.93 -0.36 0.35 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.70 6.86 -51.93 -0.36 0.35 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.39 5.56 5.24 -40.82 -0.21 5.34 16 32 H 0.15 2.14 8.06 -52.48 -0.42 1.72 16 33 H 0.13 2.50 4.45 -52.49 -0.23 2.27 16 34 H 0.30 7.48 8.73 -40.82 -0.36 7.13 16 LS Contribution 302.31 15.07 4.56 4.56 Total: -1.00 -29.69 302.31 -5.51 -35.20 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -3.66 Total: 7.01 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -1.10 Total: -9.32 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 1.23 Total: -37.64 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: 0.07 Total: -14.70 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.22 Total: 17.74 kcal Atomic # 16 Polarization: -0.44 SS G_CDS: -2.39 Total: -2.84 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.69 -5.51 -35.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867318691.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.769 kcal (2) G-P(sol) polarization free energy of solvation -29.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds