Wall clock time and date at job start Tue Mar 31 2020 01:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47029 * 2 1 4 4 C 1.47199 * 109.47276 * 239.99672 * 2 1 3 5 5 N 2.60803 * 109.47206 * 239.99640 * 2 1 3 6 6 C 1.53003 * 109.47337 * 119.99403 * 2 1 3 7 7 N 1.46498 * 109.47445 * 300.00440 * 6 2 1 8 8 C 1.34773 * 120.00308 * 179.97438 * 7 6 2 9 9 O 1.21761 * 120.00011 * 359.97438 * 8 7 6 10 10 C 1.46234 * 120.00188 * 179.97438 * 8 7 6 11 11 S 1.75667 * 125.22974 * 0.02701 * 10 8 7 12 12 C 1.75471 * 92.09340 * 179.97438 * 11 10 8 13 13 C 1.32766 * 111.36155 * 359.73595 * 12 11 10 14 14 C 1.39550 * 125.23004 * 179.97438 * 10 8 7 15 15 C 1.40538 * 123.71114 * 0.02562 * 14 10 8 16 16 H 1.07995 * 120.00313 * 24.76107 * 15 14 10 17 17 C 1.40309 * 119.99881 * 204.75621 * 15 14 10 18 18 N 1.30643 * 120.00210 * 195.55488 * 17 15 14 19 19 Si 1.86803 * 119.99586 * 15.55915 * 17 15 14 20 20 H 1.48500 * 109.46999 * 263.28232 * 19 17 15 21 21 H 1.48497 * 109.47431 * 23.28650 * 19 17 15 22 22 H 1.48505 * 109.47091 * 143.28751 * 19 17 15 23 23 H 1.09004 * 109.47071 * 299.99837 * 1 2 3 24 24 H 1.08996 * 109.47604 * 60.00040 * 1 2 3 25 25 H 1.09003 * 109.46927 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47038 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47087 * 299.99696 * 3 2 1 28 28 H 1.08994 * 109.47125 * 59.99986 * 3 2 1 29 29 H 1.08998 * 109.47312 * 179.97438 * 6 2 1 30 30 H 1.09004 * 109.46814 * 60.00425 * 6 2 1 31 31 H 0.97003 * 119.99988 * 359.97438 * 7 6 2 32 32 H 1.08004 * 124.31449 * 179.97438 * 12 11 10 33 33 H 1.08001 * 122.77944 * 180.23814 * 13 12 11 34 34 H 0.97000 * 119.99615 * 353.17170 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0206 -0.6940 -1.2018 5 7 2.3993 -1.2296 -2.1294 6 6 2.0400 -0.7211 1.2493 7 7 1.5516 -0.0305 2.4455 8 6 1.8768 -0.4912 3.6696 9 8 2.5762 -1.4816 3.7814 10 6 1.3898 0.1985 4.8635 11 16 0.3760 1.6332 4.8624 12 6 0.3381 1.6862 6.6159 13 6 1.0361 0.6885 7.1451 14 6 1.6581 -0.1824 6.1790 15 6 2.4439 -1.2954 6.5239 16 1 3.1863 -1.6671 5.8333 17 6 2.2638 -1.9235 7.7656 18 7 3.1714 -2.7465 8.2190 19 14 0.7262 -1.5829 8.7702 20 1 1.0180 -0.5359 9.7821 21 1 -0.3587 -1.1139 7.8713 22 1 0.2972 -2.8282 9.4562 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 3.1300 -0.7215 1.2491 30 1 1.6767 -1.7488 1.2493 31 1 0.9942 0.7583 2.3564 32 1 -0.1892 2.4329 7.1912 33 1 1.1326 0.5433 8.2110 34 1 3.9201 -3.0004 7.6569 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867318691.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:13 Heat of formation + Delta-G solvation = -21.701325 kcal Electronic energy + Delta-G solvation = -18790.045315 eV Core-core repulsion = 15812.979798 eV Total energy + Delta-G solvation = -2977.065516 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.64580 -39.11381 -37.94005 -36.54733 -35.19582 -33.88434 -30.91626 -28.82855 -28.31232 -27.02020 -24.06683 -23.17505 -21.84067 -21.05819 -19.94788 -18.29687 -17.61435 -16.84111 -16.45805 -16.33701 -16.24686 -15.38576 -15.17710 -15.04100 -14.82698 -14.54586 -14.15512 -14.09051 -13.86674 -13.65701 -13.39706 -13.02426 -12.86034 -12.82259 -12.57434 -12.52448 -12.06991 -11.97077 -11.83898 -11.68841 -11.31767 -11.05494 -10.46851 -10.03034 -9.66891 -9.31705 -8.99361 -6.55099 0.16358 1.23377 1.31268 1.50327 1.53011 1.62063 1.62662 1.72873 1.83001 2.16228 2.35311 2.51035 2.91860 3.20363 3.52830 3.72067 3.86017 4.27616 4.46024 4.53645 4.60174 4.76067 4.78988 4.84914 4.91967 4.96860 5.20485 5.22231 5.29508 5.30733 5.40898 5.59017 5.62128 6.21329 6.34346 6.38597 6.67582 6.91780 7.68583 7.81494 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.024889 B = 0.005034 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.713716 B = 5561.116950 C = 6343.473060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.036 3.964 3 C -0.143 4.143 4 C 0.244 3.756 5 N -0.473 5.473 6 C 0.139 3.861 7 N -0.722 5.722 8 C 0.591 3.409 9 O -0.607 6.607 10 C -0.459 4.459 11 S 0.064 5.936 12 C -0.152 4.152 13 C -0.199 4.199 14 C 0.100 3.900 15 C -0.475 4.475 16 H 0.057 0.943 17 C 0.003 3.997 18 N -0.815 5.815 19 Si 1.103 2.897 20 H -0.238 1.238 21 H -0.247 1.247 22 H -0.281 1.281 23 H 0.089 0.911 24 H 0.092 0.908 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.407 0.593 32 H 0.197 0.803 33 H 0.137 0.863 34 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.974 12.394 -7.253 17.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.032 3.968 3 C -0.201 4.201 4 C -0.075 4.075 5 N -0.148 5.148 6 C 0.014 3.986 7 N -0.377 5.377 8 C 0.387 3.613 9 O -0.492 6.492 10 C -0.578 4.578 11 S 0.322 5.678 12 C -0.287 4.287 13 C -0.232 4.232 14 C 0.088 3.912 15 C -0.507 4.507 16 H 0.075 0.925 17 C -0.214 4.214 18 N -0.437 5.437 19 Si 0.921 3.079 20 H -0.163 1.163 21 H -0.171 1.171 22 H -0.208 1.208 23 H 0.108 0.892 24 H 0.111 0.889 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.111 0.889 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.245 0.755 32 H 0.214 0.786 33 H 0.155 0.845 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.126 11.410 -8.340 17.386 hybrid contribution 2.072 -0.947 -0.187 2.286 sum -8.054 10.463 -8.528 15.718 Atomic orbital electron populations 1.21982 0.88906 1.04012 1.05212 1.18485 0.98751 0.95671 0.83866 1.21981 1.02112 0.90801 1.05205 1.29106 0.92009 0.92391 0.93952 1.81227 1.10192 1.10189 1.13191 1.21058 0.98734 0.95758 0.83093 1.45435 1.55738 1.32762 1.03739 1.17082 0.78874 0.82623 0.82762 1.90694 1.42202 1.29328 1.87016 1.23055 1.27023 1.12580 0.95103 1.82292 1.54034 1.28164 1.03273 1.25603 1.02878 1.02192 0.98041 1.21369 1.04057 0.97967 0.99842 1.18313 0.89445 0.92690 0.90709 1.20790 1.16353 1.11032 1.02486 0.92455 1.28962 1.03573 0.92101 0.96763 1.70496 1.08831 1.27407 1.36963 0.83414 0.71493 0.77603 0.75425 1.16291 1.17096 1.20811 0.89219 0.88875 0.91890 0.91955 0.88875 0.89237 0.92655 0.92578 0.75504 0.78576 0.84543 0.90979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.26 71.98 0.59 -1.48 16 2 C 0.04 0.69 0.70 -53.99 -0.04 0.65 16 3 C -0.14 -2.08 8.26 71.98 0.59 -1.49 16 4 C 0.24 5.77 13.86 89.44 1.24 7.01 16 5 N -0.47 -13.70 18.54 20.01 0.37 -13.33 16 6 C 0.14 3.96 4.52 86.38 0.39 4.35 16 7 N -0.72 -23.20 4.95 -467.48 -2.32 -25.51 16 8 C 0.59 27.05 7.76 86.32 0.67 27.72 16 9 O -0.61 -34.09 14.47 -4.55 -0.07 -34.15 16 10 C -0.46 -20.75 6.51 24.67 0.16 -20.59 16 11 S 0.06 2.06 22.25 -56.49 -1.26 0.80 16 12 C -0.15 -4.85 11.07 66.64 0.74 -4.11 16 13 C -0.20 -8.00 7.36 22.60 0.17 -7.83 16 14 C 0.10 4.95 5.30 -20.89 -0.11 4.84 16 15 C -0.48 -27.00 8.88 23.33 0.21 -26.79 16 16 H 0.06 3.75 6.28 -2.91 -0.02 3.73 16 17 C 0.00 0.14 5.49 85.37 0.47 0.61 16 18 N -0.81 -44.73 13.64 21.89 0.30 -44.43 16 19 Si 1.10 44.02 24.85 68.60 1.70 45.73 16 20 H -0.24 -8.13 6.81 99.48 0.68 -7.45 16 21 H -0.25 -9.41 6.40 99.48 0.64 -8.77 16 22 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 23 H 0.09 1.18 6.86 -2.39 -0.02 1.16 16 24 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 27 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.09 1.18 6.86 -2.39 -0.02 1.16 16 29 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.41 10.29 5.24 -92.71 -0.49 9.81 16 32 H 0.20 4.27 8.06 -2.91 -0.02 4.25 16 33 H 0.14 5.09 4.45 -2.91 -0.01 5.07 16 34 H 0.28 15.68 8.73 -92.71 -0.81 14.87 16 Total: -1.00 -71.52 302.31 4.34 -67.18 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.52 Total: 20.83 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: 5.08 Total: -17.11 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -1.65 Total: -83.28 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -0.07 Total: -34.15 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.70 Total: 45.73 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.26 Total: 0.80 kcal Total: -71.52 4.34 -67.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867318691.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.482 kcal (2) G-P(sol) polarization free energy of solvation -71.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds