Wall clock time and date at job start Tue Mar 31 2020 00:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30621 * 1 3 3 Si 1.86801 * 119.99853 * 2 1 4 4 H 1.48499 * 109.46712 * 83.29818 * 3 2 1 5 5 H 1.48503 * 109.47023 * 203.29299 * 3 2 1 6 6 H 1.48502 * 109.47405 * 323.29514 * 3 2 1 7 7 C 1.40332 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00437 * 18.70663 * 7 2 1 9 9 C 1.40507 * 119.99859 * 198.70164 * 7 2 1 10 10 C 1.39677 * 123.35993 * 25.07684 * 9 7 2 11 11 C 1.32871 * 115.27613 * 179.97438 * 10 9 7 12 12 S 1.75648 * 110.86920 * 0.02562 * 11 10 9 13 13 C 1.39695 * 123.36449 * 204.77785 * 9 7 2 14 14 C 1.41752 * 125.45776 * 0.02562 * 13 9 7 15 15 O 1.21698 * 119.99753 * 0.02562 * 14 13 9 16 16 O 1.34997 * 120.00408 * 180.02562 * 14 13 9 17 17 C 1.42906 * 117.00329 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47112 * 179.97438 * 17 16 14 19 19 C 1.54633 * 111.03660 * 287.01604 * 18 17 16 20 20 C 1.51093 * 104.72701 * 217.33596 * 19 18 17 21 21 C 1.30528 * 111.10892 * 16.43900 * 20 19 18 22 22 C 1.51105 * 111.09608 * 359.97438 * 21 20 19 23 23 H 0.97002 * 120.00217 * 173.01008 * 1 2 3 24 24 H 1.07995 * 122.36237 * 359.94040 * 10 9 7 25 25 H 1.08001 * 124.56473 * 179.97438 * 11 10 9 26 26 H 1.08999 * 109.46864 * 299.99639 * 17 16 14 27 27 H 1.08991 * 109.47175 * 59.99387 * 17 16 14 28 28 H 1.09000 * 110.91805 * 51.03475 * 18 17 16 29 29 H 1.09000 * 110.38639 * 336.15313 * 19 18 17 30 30 H 1.09005 * 110.38242 * 98.52879 * 19 18 17 31 31 H 1.08009 * 124.44631 * 196.45869 * 20 19 18 32 32 H 1.07991 * 124.45440 * 180.02562 * 21 20 19 33 33 H 1.09003 * 110.38405 * 224.74714 * 22 21 20 34 34 H 1.09007 * 110.38405 * 102.37974 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.3461 2.1281 1.3905 5 1 3.6014 1.4035 -0.5537 6 1 1.5156 2.6077 -0.8368 7 6 2.0078 -1.2153 -0.0005 8 1 1.5106 -2.1259 -0.3009 9 6 3.3572 -1.2477 0.3896 10 6 3.9335 -0.3022 1.2411 11 6 5.2226 -0.4870 1.5046 12 16 5.8330 -1.9100 0.6753 13 6 4.2551 -2.2320 -0.0305 14 6 3.9446 -3.3151 -0.8907 15 8 2.8155 -3.4415 -1.3267 16 8 4.9014 -4.2063 -1.2263 17 6 4.5183 -5.2724 -2.0975 18 6 5.7263 -6.1729 -2.3632 19 6 6.7381 -5.4806 -3.3056 20 6 7.2655 -6.5904 -4.1849 21 6 6.4942 -7.6419 -4.1282 22 6 5.3241 -7.4087 -3.2009 23 1 -0.4850 -0.8338 -0.1022 24 1 3.3710 0.5213 1.6555 25 1 5.8155 0.1522 2.1420 26 1 3.7253 -5.8562 -1.6303 27 1 4.1587 -4.8599 -3.0400 28 1 6.2018 -6.4719 -1.4291 29 1 6.2381 -4.7231 -3.9090 30 1 7.5492 -5.0345 -2.7299 31 1 8.1630 -6.5227 -4.7819 32 1 6.6696 -8.5584 -4.6718 33 1 5.1736 -8.2735 -2.5546 34 1 4.4208 -7.2004 -3.7744 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870043730.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:13 Heat of formation + Delta-G solvation = -58.243794 kcal Electronic energy + Delta-G solvation = -18738.569521 eV Core-core repulsion = 15727.626653 eV Total energy + Delta-G solvation = -3010.942868 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.076 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.49273 -38.39127 -36.95911 -34.97779 -33.55795 -30.72272 -29.25654 -28.15716 -27.03746 -24.70977 -22.18620 -21.03585 -20.07237 -19.28684 -18.80878 -17.71113 -16.84797 -16.15931 -15.78852 -15.34050 -14.94160 -14.68773 -13.75078 -13.52984 -13.25705 -12.70102 -12.69117 -12.15951 -12.09887 -11.90025 -11.79844 -11.55419 -11.33382 -11.16797 -11.09163 -10.85305 -10.67351 -10.24008 -10.04753 -9.68789 -9.65422 -9.39785 -8.91887 -8.85479 -7.92730 -7.66564 -7.40353 -4.79691 1.67430 2.21392 2.84266 2.91095 3.12596 3.27782 3.43909 3.48103 3.73093 3.79779 4.16593 4.63777 4.67067 4.97539 5.07531 5.25796 5.36346 5.57770 5.70156 5.74261 5.76479 5.83875 5.96338 6.02480 6.06347 6.16944 6.35681 6.47399 6.74911 6.78493 6.85522 7.13445 7.15769 7.29861 7.66854 7.93300 8.27325 8.44973 9.28259 9.57205 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.025988 B = 0.004716 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.179400 B = 5935.302065 C = 6592.728286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.033 3.967 3 Si 1.066 2.934 4 H -0.270 1.270 5 H -0.255 1.255 6 H -0.279 1.279 7 C -0.410 4.410 8 H 0.111 0.889 9 C 0.111 3.889 10 C -0.168 4.168 11 C -0.174 4.174 12 S 0.016 5.984 13 C -0.415 4.415 14 C 0.532 3.468 15 O -0.549 6.549 16 O -0.368 6.368 17 C 0.084 3.916 18 C -0.091 4.091 19 C -0.096 4.096 20 C -0.162 4.162 21 C -0.173 4.173 22 C -0.094 4.094 23 H 0.297 0.703 24 H 0.126 0.874 25 H 0.148 0.852 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.072 0.928 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.549 -5.705 -2.942 11.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.192 4.192 3 Si 0.890 3.110 4 H -0.196 1.196 5 H -0.179 1.179 6 H -0.206 1.206 7 C -0.441 4.441 8 H 0.129 0.871 9 C 0.101 3.899 10 C -0.202 4.202 11 C -0.309 4.309 12 S 0.275 5.725 13 C -0.531 4.531 14 C 0.388 3.612 15 O -0.446 6.446 16 O -0.287 6.287 17 C 0.008 3.992 18 C -0.109 4.109 19 C -0.133 4.133 20 C -0.180 4.180 21 C -0.191 4.191 22 C -0.131 4.131 23 H 0.110 0.890 24 H 0.143 0.857 25 H 0.166 0.834 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.091 0.909 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.328 -4.913 -3.080 11.845 hybrid contribution -1.406 -1.190 -0.049 1.843 sum 8.922 -6.103 -3.129 11.254 Atomic orbital electron populations 1.70399 1.08242 1.34517 1.25778 1.27795 0.95742 1.05094 0.90569 0.83754 0.76513 0.72474 0.78288 1.19627 1.17876 1.20571 1.21228 0.94281 0.97872 1.30677 0.87081 1.16891 0.92979 0.89640 0.90432 1.20296 0.95183 1.01959 1.02749 1.25275 0.98619 1.02256 1.04738 1.83288 1.14176 1.24547 1.50531 1.20847 0.96048 1.11390 1.24799 1.18202 0.82244 0.80869 0.79883 1.90731 1.22110 1.75364 1.56406 1.86170 1.42962 1.37056 1.62548 1.22278 0.95865 0.87440 0.93599 1.22028 0.95545 0.94355 0.98978 1.21436 0.98496 0.96999 0.96349 1.23368 0.99203 0.95665 0.99802 1.23215 0.96737 0.98714 1.00418 1.21328 0.97637 0.97304 0.96796 0.89022 0.85676 0.83439 0.92471 0.92404 0.89373 0.90420 0.90682 0.86041 0.85998 0.90940 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.33 13.64 55.57 0.76 -18.58 16 2 C 0.03 0.83 5.47 -17.28 -0.09 0.74 16 3 Si 1.07 21.96 24.94 -169.99 -4.24 17.72 16 4 H -0.27 -5.06 6.78 56.52 0.38 -4.67 16 5 H -0.25 -5.26 6.67 56.52 0.38 -4.88 16 6 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.41 -11.05 8.79 -37.94 -0.33 -11.38 16 8 H 0.11 3.29 6.22 -52.48 -0.33 2.96 16 9 C 0.11 2.85 5.15 -107.96 -0.56 2.29 16 10 C -0.17 -3.74 7.31 -40.89 -0.30 -4.04 16 11 C -0.17 -3.43 11.11 28.88 0.32 -3.11 16 12 S 0.02 0.35 23.02 -107.50 -2.47 -2.13 16 13 C -0.41 -10.56 6.36 -37.70 -0.24 -10.79 16 14 C 0.53 13.63 7.73 32.07 0.25 13.88 16 15 O -0.55 -15.32 14.10 -19.42 -0.27 -15.60 16 16 O -0.37 -8.08 9.84 -41.31 -0.41 -8.49 16 17 C 0.08 1.50 4.69 37.16 0.17 1.68 16 18 C -0.09 -1.28 3.41 -88.91 -0.30 -1.59 16 19 C -0.10 -1.29 6.35 -26.83 -0.17 -1.46 16 20 C -0.16 -1.83 10.77 -35.70 -0.38 -2.22 16 21 C -0.17 -1.86 10.78 -35.70 -0.38 -2.25 16 22 C -0.09 -1.10 6.38 -26.84 -0.17 -1.27 16 23 H 0.30 7.37 8.73 -40.82 -0.36 7.01 16 24 H 0.13 2.57 4.62 -52.49 -0.24 2.33 16 25 H 0.15 2.30 8.06 -52.49 -0.42 1.88 16 26 H 0.06 1.03 8.13 -51.93 -0.42 0.61 16 27 H 0.06 1.06 7.91 -51.93 -0.41 0.65 16 28 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.08 1.11 7.74 -51.93 -0.40 0.70 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 32 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.91 7.89 -51.93 -0.41 0.50 16 LS Contribution 300.20 15.07 4.52 4.52 Total: -1.00 -28.80 300.20 -8.25 -37.05 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -3.95 Total: 5.01 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -2.19 Total: -19.52 kcal Atomic # 7 Polarization: -19.33 SS G_CDS: 0.76 Total: -18.58 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.68 Total: -24.09 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.24 Total: 17.72 kcal Atomic # 16 Polarization: 0.35 SS G_CDS: -2.47 Total: -2.13 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.80 -8.25 -37.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870043730.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.189 kcal (2) G-P(sol) polarization free energy of solvation -28.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds