Wall clock time and date at job start Tue Mar 31 2020 00:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30621 * 1 3 3 Si 1.86801 * 119.99853 * 2 1 4 4 H 1.48499 * 109.46712 * 83.29818 * 3 2 1 5 5 H 1.48503 * 109.47023 * 203.29299 * 3 2 1 6 6 H 1.48502 * 109.47405 * 323.29514 * 3 2 1 7 7 C 1.40332 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00437 * 18.70663 * 7 2 1 9 9 C 1.40507 * 119.99859 * 198.70164 * 7 2 1 10 10 C 1.39677 * 123.35993 * 25.07684 * 9 7 2 11 11 C 1.32871 * 115.27613 * 179.97438 * 10 9 7 12 12 S 1.75648 * 110.86920 * 0.02562 * 11 10 9 13 13 C 1.39695 * 123.36449 * 204.77785 * 9 7 2 14 14 C 1.41752 * 125.45776 * 0.02562 * 13 9 7 15 15 O 1.21698 * 119.99753 * 0.02562 * 14 13 9 16 16 O 1.34997 * 120.00408 * 180.02562 * 14 13 9 17 17 C 1.42906 * 117.00329 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47112 * 179.97438 * 17 16 14 19 19 C 1.54633 * 111.03660 * 287.01604 * 18 17 16 20 20 C 1.51093 * 104.72701 * 217.33596 * 19 18 17 21 21 C 1.30528 * 111.10892 * 16.43900 * 20 19 18 22 22 C 1.51105 * 111.09608 * 359.97438 * 21 20 19 23 23 H 0.97002 * 120.00217 * 173.01008 * 1 2 3 24 24 H 1.07995 * 122.36237 * 359.94040 * 10 9 7 25 25 H 1.08001 * 124.56473 * 179.97438 * 11 10 9 26 26 H 1.08999 * 109.46864 * 299.99639 * 17 16 14 27 27 H 1.08991 * 109.47175 * 59.99387 * 17 16 14 28 28 H 1.09000 * 110.91805 * 51.03475 * 18 17 16 29 29 H 1.09000 * 110.38639 * 336.15313 * 19 18 17 30 30 H 1.09005 * 110.38242 * 98.52879 * 19 18 17 31 31 H 1.08009 * 124.44631 * 196.45869 * 20 19 18 32 32 H 1.07991 * 124.45440 * 180.02562 * 21 20 19 33 33 H 1.09003 * 110.38405 * 224.74714 * 22 21 20 34 34 H 1.09007 * 110.38405 * 102.37974 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.3461 2.1281 1.3905 5 1 3.6014 1.4035 -0.5537 6 1 1.5156 2.6077 -0.8368 7 6 2.0078 -1.2153 -0.0005 8 1 1.5106 -2.1259 -0.3009 9 6 3.3572 -1.2477 0.3896 10 6 3.9335 -0.3022 1.2411 11 6 5.2226 -0.4870 1.5046 12 16 5.8330 -1.9100 0.6753 13 6 4.2551 -2.2320 -0.0305 14 6 3.9446 -3.3151 -0.8907 15 8 2.8155 -3.4415 -1.3267 16 8 4.9014 -4.2063 -1.2263 17 6 4.5183 -5.2724 -2.0975 18 6 5.7263 -6.1729 -2.3632 19 6 6.7381 -5.4806 -3.3056 20 6 7.2655 -6.5904 -4.1849 21 6 6.4942 -7.6419 -4.1282 22 6 5.3241 -7.4087 -3.2009 23 1 -0.4850 -0.8338 -0.1022 24 1 3.3710 0.5213 1.6555 25 1 5.8155 0.1522 2.1420 26 1 3.7253 -5.8562 -1.6303 27 1 4.1587 -4.8599 -3.0400 28 1 6.2018 -6.4719 -1.4291 29 1 6.2381 -4.7231 -3.9090 30 1 7.5492 -5.0345 -2.7299 31 1 8.1630 -6.5227 -4.7819 32 1 6.6696 -8.5584 -4.6718 33 1 5.1736 -8.2735 -2.5546 34 1 4.4208 -7.2004 -3.7744 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870043730.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:13 Heat of formation + Delta-G solvation = -73.962369 kcal Electronic energy + Delta-G solvation = -18739.251130 eV Core-core repulsion = 15727.626653 eV Total energy + Delta-G solvation = -3011.624476 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.076 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.23751 -39.67751 -38.70350 -36.87964 -35.42091 -32.05050 -30.99847 -29.16706 -28.87110 -26.11811 -23.97246 -22.79379 -21.30079 -21.14306 -19.85659 -19.39471 -18.71049 -17.60256 -17.24447 -16.85957 -16.62994 -16.23820 -15.44250 -15.28751 -14.90072 -14.37732 -13.85969 -13.72354 -13.57985 -13.53507 -13.05894 -13.04305 -12.77871 -12.67040 -12.32412 -12.08911 -12.04356 -11.98311 -11.75752 -11.43210 -11.35559 -11.11594 -10.85619 -9.83348 -9.82448 -9.50185 -9.23133 -6.77752 -0.12988 1.16846 1.26502 1.35114 1.47103 1.55124 1.64188 1.78993 2.05421 2.12403 2.24134 3.03643 3.55324 3.58774 3.85104 4.17736 4.22305 4.27065 4.38449 4.44988 4.52079 4.69052 4.75759 4.83021 4.87367 5.01398 5.04100 5.07221 5.16966 5.23102 5.33788 5.43925 5.58511 5.71667 6.00360 6.01210 6.22676 6.52584 7.30646 7.61957 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.025988 B = 0.004716 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.179400 B = 5935.302065 C = 6592.728286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.008 3.992 3 Si 1.098 2.902 4 H -0.229 1.229 5 H -0.255 1.255 6 H -0.272 1.272 7 C -0.452 4.452 8 H 0.064 0.936 9 C 0.106 3.894 10 C -0.201 4.201 11 C -0.139 4.139 12 S 0.059 5.941 13 C -0.456 4.456 14 C 0.522 3.478 15 O -0.586 6.586 16 O -0.365 6.365 17 C 0.079 3.921 18 C -0.088 4.088 19 C -0.100 4.100 20 C -0.169 4.169 21 C -0.164 4.164 22 C -0.094 4.094 23 H 0.286 0.714 24 H 0.146 0.854 25 H 0.204 0.796 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.145 0.855 32 H 0.151 0.849 33 H 0.089 0.911 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.660 -5.047 -2.226 13.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.212 4.212 3 Si 0.914 3.086 4 H -0.153 1.153 5 H -0.179 1.179 6 H -0.198 1.198 7 C -0.482 4.482 8 H 0.082 0.918 9 C 0.095 3.905 10 C -0.234 4.234 11 C -0.274 4.274 12 S 0.317 5.683 13 C -0.572 4.572 14 C 0.380 3.620 15 O -0.486 6.486 16 O -0.283 6.283 17 C 0.004 3.996 18 C -0.106 4.106 19 C -0.137 4.137 20 C -0.187 4.187 21 C -0.182 4.182 22 C -0.131 4.131 23 H 0.097 0.903 24 H 0.163 0.837 25 H 0.221 0.779 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.109 0.891 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.162 0.838 32 H 0.168 0.832 33 H 0.107 0.893 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 13.445 -4.294 -2.353 14.309 hybrid contribution -2.258 -1.569 -0.301 2.766 sum 11.187 -5.863 -2.653 12.906 Atomic orbital electron populations 1.70473 1.08727 1.33743 1.27754 1.29083 0.95759 1.07385 0.89013 0.83441 0.75287 0.69087 0.80757 1.15269 1.17876 1.19815 1.21079 0.95761 0.97324 1.34045 0.91821 1.17284 0.92494 0.90622 0.90082 1.20338 0.96520 1.02768 1.03729 1.25911 0.97894 1.00914 1.02649 1.83048 1.10703 1.25070 1.49468 1.21415 0.99189 1.11321 1.25229 1.18560 0.82175 0.81519 0.79717 1.90710 1.23702 1.76444 1.57747 1.86145 1.41802 1.37375 1.62990 1.22586 0.97987 0.86736 0.92277 1.22037 0.94037 0.94721 0.99850 1.21434 0.98088 0.97650 0.96490 1.23425 1.00427 0.94739 1.00081 1.23413 0.95486 0.99613 0.99695 1.21367 0.98264 0.96439 0.97009 0.90253 0.83679 0.77864 0.93109 0.93367 0.89130 0.91974 0.90895 0.83763 0.83153 0.89291 0.90640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -41.20 13.64 21.89 0.30 -40.90 16 2 C 0.01 0.39 5.47 85.38 0.47 0.86 16 3 Si 1.10 42.81 24.94 68.60 1.71 44.52 16 4 H -0.23 -7.44 6.78 99.48 0.67 -6.77 16 5 H -0.25 -9.86 6.67 99.48 0.66 -9.20 16 6 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 7 C -0.45 -25.62 8.79 23.33 0.21 -25.42 16 8 H 0.06 4.13 6.22 -2.91 -0.02 4.11 16 9 C 0.11 5.50 5.15 -22.03 -0.11 5.39 16 10 C -0.20 -8.43 7.31 21.44 0.16 -8.27 16 11 C -0.14 -4.85 11.11 66.64 0.74 -4.11 16 12 S 0.06 2.34 23.02 -56.49 -1.30 1.04 16 13 C -0.46 -23.48 6.36 23.49 0.15 -23.33 16 14 C 0.52 27.97 7.73 68.69 0.53 28.50 16 15 O -0.59 -35.06 14.10 19.19 0.27 -34.79 16 16 O -0.36 -16.49 9.84 -59.15 -0.58 -17.07 16 17 C 0.08 2.95 4.69 71.98 0.34 3.29 16 18 C -0.09 -2.47 3.41 -9.69 -0.03 -2.50 16 19 C -0.10 -2.61 6.35 30.53 0.19 -2.42 16 20 C -0.17 -3.44 10.77 26.26 0.28 -3.15 16 21 C -0.16 -3.09 10.78 26.26 0.28 -2.81 16 22 C -0.09 -2.07 6.38 30.53 0.19 -1.87 16 23 H 0.29 15.23 8.73 -92.71 -0.81 14.42 16 24 H 0.15 5.46 4.62 -2.91 -0.01 5.44 16 25 H 0.20 4.85 8.06 -2.91 -0.02 4.83 16 26 H 0.05 1.94 8.13 -2.39 -0.02 1.92 16 27 H 0.05 1.87 7.91 -2.39 -0.02 1.86 16 28 H 0.09 2.50 8.14 -2.39 -0.02 2.49 16 29 H 0.06 1.80 7.74 -2.39 -0.02 1.78 16 30 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 31 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 32 H 0.15 2.02 8.06 -2.92 -0.02 2.00 16 33 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.08 1.71 7.89 -2.38 -0.02 1.69 16 Total: -1.00 -66.99 300.20 4.79 -62.19 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 1.00 Total: 20.86 kcal Atomic # 6 Polarization: -39.24 SS G_CDS: 3.39 Total: -35.84 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.30 Total: -40.90 kcal Atomic # 8 Polarization: -51.56 SS G_CDS: -0.31 Total: -51.87 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.71 Total: 44.52 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -1.30 Total: 1.04 kcal Total: -66.99 4.79 -62.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870043730.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.768 kcal (2) G-P(sol) polarization free energy of solvation -66.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds