Wall clock time and date at job start Tue Mar 31 2020 00:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30619 * 1 3 3 Si 1.86806 * 119.99882 * 2 1 4 4 H 1.48497 * 109.47281 * 269.99872 * 3 2 1 5 5 H 1.48504 * 109.47115 * 29.99906 * 3 2 1 6 6 H 1.48493 * 109.47037 * 149.99652 * 3 2 1 7 7 C 1.40332 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00188 * 169.96688 * 7 2 1 9 9 C 1.40505 * 120.00031 * 349.97027 * 7 2 1 10 10 C 1.39675 * 123.36168 * 334.79252 * 9 7 2 11 11 C 1.32869 * 115.27602 * 180.27899 * 10 9 7 12 12 S 1.75645 * 110.86954 * 359.75996 * 11 10 9 13 13 C 1.39703 * 123.36265 * 154.62702 * 9 7 2 14 14 C 1.41745 * 125.45356 * 0.02562 * 13 9 7 15 15 O 1.21695 * 120.00496 * 359.71862 * 14 13 9 16 16 O 1.35004 * 119.99800 * 179.72037 * 14 13 9 17 17 C 1.42906 * 116.99921 * 180.02562 * 16 14 13 18 18 H 1.08994 * 109.35842 * 29.72261 * 17 16 14 19 19 C 1.50065 * 109.35561 * 269.99616 * 17 16 14 20 20 C 1.29441 * 124.07804 * 222.66404 * 19 17 16 21 21 C 1.50076 * 124.07545 * 0.49074 * 20 19 17 22 22 C 1.53026 * 110.14327 * 342.84762 * 21 20 19 23 23 C 1.53020 * 109.35628 * 149.31051 * 17 16 14 24 24 H 0.97001 * 120.00087 * 0.02562 * 1 2 3 25 25 H 1.07999 * 122.36137 * 0.03997 * 10 9 7 26 26 H 1.08001 * 124.56361 * 179.76213 * 11 10 9 27 27 H 1.08005 * 117.96440 * 42.64142 * 19 17 16 28 28 H 1.08005 * 117.96664 * 180.47086 * 20 19 17 29 29 H 1.08993 * 109.35668 * 103.05430 * 21 20 19 30 30 H 1.08998 * 109.35802 * 222.64293 * 21 20 19 31 31 H 1.08998 * 109.63928 * 169.11873 * 22 21 20 32 32 H 1.09001 * 109.64293 * 289.74796 * 22 21 20 33 33 H 1.08999 * 109.64382 * 289.32002 * 23 17 16 34 34 H 1.09002 * 109.64846 * 49.74495 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.4877 2.0465 -1.4000 5 1 1.4376 2.6528 0.7000 6 1 3.5377 1.4403 0.7001 7 6 2.0079 -1.2153 0.0005 8 1 3.0756 -1.2225 -0.1624 9 6 1.3215 -2.4227 0.2130 10 6 0.1141 -2.5075 0.9101 11 6 -0.3923 -3.7309 1.0209 12 16 0.6394 -4.9095 0.2261 13 6 1.7769 -3.6579 -0.2547 14 6 2.9682 -3.8690 -0.9931 15 8 3.6862 -2.9269 -1.2723 16 8 3.3065 -5.1153 -1.3867 17 6 4.5209 -5.2547 -2.1270 18 1 5.2208 -4.4765 -1.8227 19 6 4.2289 -5.1158 -3.5924 20 6 4.7415 -5.8725 -4.5090 21 6 5.6913 -7.0013 -4.2334 22 6 6.2836 -6.8607 -2.8294 23 6 5.1354 -6.6263 -1.8397 24 1 -0.4850 0.8400 -0.0004 25 1 -0.3716 -1.6404 1.3326 26 1 -1.3141 -3.9686 1.5310 27 1 3.5483 -4.3362 -3.9015 28 1 4.4684 -5.6799 -5.5360 29 1 5.1576 -7.9487 -4.3072 30 1 6.4960 -6.9840 -4.9684 31 1 6.8160 -7.7738 -2.5633 32 1 6.9684 -6.0130 -2.8038 33 1 5.5201 -6.6492 -0.8201 34 1 4.3779 -7.4004 -1.9629 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870043790.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:25 Heat of formation + Delta-G solvation = -62.198606 kcal Electronic energy + Delta-G solvation = -18971.378619 eV Core-core repulsion = 15960.264258 eV Total energy + Delta-G solvation = -3011.114361 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.076 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.59037 -37.72215 -36.53693 -34.71589 -33.25443 -30.92854 -29.89649 -28.96773 -26.70076 -23.42612 -22.28761 -22.11300 -20.45127 -18.82459 -17.93431 -17.47399 -16.64769 -15.97141 -15.47290 -15.06160 -14.71918 -14.24290 -13.86875 -13.24724 -12.89816 -12.76086 -12.58910 -12.55045 -12.09469 -11.99550 -11.74705 -11.52434 -11.23061 -11.11309 -10.93253 -10.54693 -10.53462 -10.43934 -10.29952 -9.71408 -9.48761 -9.28869 -8.88012 -8.74645 -7.55794 -7.24758 -7.17970 -4.68633 1.92285 2.42157 2.88975 2.92155 2.99901 3.15098 3.60058 3.71760 3.77420 4.03432 4.22518 4.83327 4.87174 5.11227 5.15957 5.36294 5.46952 5.58813 5.64194 5.79314 5.88036 5.95090 6.04985 6.06026 6.34099 6.41588 6.68675 6.77287 6.91430 7.02770 7.09978 7.16770 7.47094 7.54640 7.78722 8.22642 8.42542 8.54910 9.36372 9.70669 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.019635 B = 0.005489 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.680007 B = 5099.735913 C = 6160.130191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.065 3.935 3 Si 0.928 3.072 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.254 1.254 7 C -0.363 4.363 8 H 0.113 0.887 9 C 0.141 3.859 10 C -0.109 4.109 11 C -0.201 4.201 12 S -0.013 6.013 13 C -0.412 4.412 14 C 0.532 3.468 15 O -0.549 6.549 16 O -0.358 6.358 17 C 0.121 3.879 18 H 0.086 0.914 19 C -0.150 4.150 20 C -0.162 4.162 21 C -0.089 4.089 22 C -0.116 4.116 23 C -0.114 4.114 24 H 0.291 0.709 25 H 0.144 0.856 26 H 0.140 0.860 27 H 0.106 0.894 28 H 0.102 0.898 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.931 -6.276 -2.647 8.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.158 4.158 3 Si 0.751 3.249 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.177 1.177 7 C -0.393 4.393 8 H 0.131 0.869 9 C 0.130 3.870 10 C -0.142 4.142 11 C -0.336 4.336 12 S 0.244 5.756 13 C -0.528 4.528 14 C 0.388 3.612 15 O -0.446 6.446 16 O -0.277 6.277 17 C 0.065 3.935 18 H 0.103 0.897 19 C -0.169 4.169 20 C -0.180 4.180 21 C -0.126 4.126 22 C -0.154 4.154 23 C -0.152 4.152 24 H 0.103 0.897 25 H 0.162 0.838 26 H 0.158 0.842 27 H 0.124 0.876 28 H 0.120 0.880 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.861 -7.446 -2.942 9.366 hybrid contribution 0.114 2.352 -0.016 2.355 sum 4.975 -5.094 -2.959 7.711 Atomic orbital electron populations 1.69667 1.08180 1.30813 1.30227 1.26452 0.95014 1.02819 0.91556 0.85946 0.80561 0.78386 0.80002 1.18719 1.19694 1.17705 1.20196 0.97914 0.88937 1.32283 0.86933 1.16924 0.90261 0.91585 0.88206 1.20585 0.96715 0.96594 1.00262 1.25265 1.03724 0.97371 1.07213 1.83230 1.19091 1.12543 1.60779 1.21016 1.05786 0.96452 1.29550 1.18313 0.85224 0.79742 0.77914 1.90702 1.53338 1.41809 1.58736 1.86331 1.40436 1.33666 1.67298 1.20741 0.86700 0.97919 0.88165 0.89674 1.22545 0.99855 0.99369 0.95096 1.21949 0.99986 0.97300 0.98764 1.20453 0.97743 0.97474 0.96948 1.21588 0.97406 1.01951 0.94432 1.21639 0.97712 0.96251 0.99562 0.89719 0.83830 0.84222 0.87551 0.87953 0.90944 0.91305 0.91203 0.91550 0.91119 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.00 10.87 55.57 0.60 -17.39 16 2 C 0.06 1.54 5.37 -17.28 -0.09 1.44 16 3 Si 0.93 17.94 29.57 -169.99 -5.03 12.91 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 6 H -0.25 -4.94 7.11 56.52 0.40 -4.54 16 7 C -0.36 -9.62 8.40 -37.94 -0.32 -9.94 16 8 H 0.11 3.11 6.07 -52.48 -0.32 2.79 16 9 C 0.14 3.77 5.53 -107.96 -0.60 3.17 16 10 C -0.11 -2.64 8.81 -40.90 -0.36 -3.00 16 11 C -0.20 -4.40 11.11 28.88 0.32 -4.08 16 12 S -0.01 -0.29 23.02 -107.50 -2.47 -2.77 16 13 C -0.41 -10.86 6.36 -37.70 -0.24 -11.10 16 14 C 0.53 13.80 7.68 32.07 0.25 14.05 16 15 O -0.55 -15.08 13.56 -19.41 -0.26 -15.35 16 16 O -0.36 -8.16 9.49 -41.33 -0.39 -8.55 16 17 C 0.12 2.27 2.66 -28.18 -0.07 2.20 16 18 H 0.09 1.71 7.10 -51.93 -0.37 1.34 16 19 C -0.15 -2.64 9.38 -35.90 -0.34 -2.97 16 20 C -0.16 -2.28 9.80 -35.90 -0.35 -2.63 16 21 C -0.09 -1.01 6.12 -28.17 -0.17 -1.19 16 22 C -0.12 -1.35 6.01 -26.52 -0.16 -1.51 16 23 C -0.11 -1.67 5.65 -26.52 -0.15 -1.82 16 24 H 0.29 6.08 8.29 -40.82 -0.34 5.74 16 25 H 0.14 3.41 6.37 -52.49 -0.33 3.08 16 26 H 0.14 2.55 8.06 -52.49 -0.42 2.13 16 27 H 0.11 2.06 8.06 -52.48 -0.42 1.63 16 28 H 0.10 1.29 8.06 -52.48 -0.42 0.86 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.10 8.13 -51.93 -0.42 0.67 16 LS Contribution 301.53 15.07 4.54 4.54 Total: -1.00 -28.53 301.53 -9.26 -37.78 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -3.96 Total: 6.20 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -2.29 Total: -17.39 kcal Atomic # 7 Polarization: -18.00 SS G_CDS: 0.60 Total: -17.39 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.66 Total: -23.90 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Atomic # 16 Polarization: -0.29 SS G_CDS: -2.47 Total: -2.77 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.53 -9.26 -37.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870043790.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.416 kcal (2) G-P(sol) polarization free energy of solvation -28.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds