Wall clock time and date at job start Tue Mar 31 2020 00:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30619 * 1 3 3 Si 1.86806 * 119.99882 * 2 1 4 4 H 1.48497 * 109.47281 * 269.99872 * 3 2 1 5 5 H 1.48504 * 109.47115 * 29.99906 * 3 2 1 6 6 H 1.48493 * 109.47037 * 149.99652 * 3 2 1 7 7 C 1.40332 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00188 * 169.96688 * 7 2 1 9 9 C 1.40505 * 120.00031 * 349.97027 * 7 2 1 10 10 C 1.39675 * 123.36168 * 334.79252 * 9 7 2 11 11 C 1.32869 * 115.27602 * 180.27899 * 10 9 7 12 12 S 1.75645 * 110.86954 * 359.75996 * 11 10 9 13 13 C 1.39703 * 123.36265 * 154.62702 * 9 7 2 14 14 C 1.41745 * 125.45356 * 0.02562 * 13 9 7 15 15 O 1.21695 * 120.00496 * 359.71862 * 14 13 9 16 16 O 1.35004 * 119.99800 * 179.72037 * 14 13 9 17 17 C 1.42906 * 116.99921 * 180.02562 * 16 14 13 18 18 H 1.08994 * 109.35842 * 29.72261 * 17 16 14 19 19 C 1.50065 * 109.35561 * 269.99616 * 17 16 14 20 20 C 1.29441 * 124.07804 * 222.66404 * 19 17 16 21 21 C 1.50076 * 124.07545 * 0.49074 * 20 19 17 22 22 C 1.53026 * 110.14327 * 342.84762 * 21 20 19 23 23 C 1.53020 * 109.35628 * 149.31051 * 17 16 14 24 24 H 0.97001 * 120.00087 * 0.02562 * 1 2 3 25 25 H 1.07999 * 122.36137 * 0.03997 * 10 9 7 26 26 H 1.08001 * 124.56361 * 179.76213 * 11 10 9 27 27 H 1.08005 * 117.96440 * 42.64142 * 19 17 16 28 28 H 1.08005 * 117.96664 * 180.47086 * 20 19 17 29 29 H 1.08993 * 109.35668 * 103.05430 * 21 20 19 30 30 H 1.08998 * 109.35802 * 222.64293 * 21 20 19 31 31 H 1.08998 * 109.63928 * 169.11873 * 22 21 20 32 32 H 1.09001 * 109.64293 * 289.74796 * 22 21 20 33 33 H 1.08999 * 109.64382 * 289.32002 * 23 17 16 34 34 H 1.09002 * 109.64846 * 49.74495 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.4877 2.0465 -1.4000 5 1 1.4376 2.6528 0.7000 6 1 3.5377 1.4403 0.7001 7 6 2.0079 -1.2153 0.0005 8 1 3.0756 -1.2225 -0.1624 9 6 1.3215 -2.4227 0.2130 10 6 0.1141 -2.5075 0.9101 11 6 -0.3923 -3.7309 1.0209 12 16 0.6394 -4.9095 0.2261 13 6 1.7769 -3.6579 -0.2547 14 6 2.9682 -3.8690 -0.9931 15 8 3.6862 -2.9269 -1.2723 16 8 3.3065 -5.1153 -1.3867 17 6 4.5209 -5.2547 -2.1270 18 1 5.2208 -4.4765 -1.8227 19 6 4.2289 -5.1158 -3.5924 20 6 4.7415 -5.8725 -4.5090 21 6 5.6913 -7.0013 -4.2334 22 6 6.2836 -6.8607 -2.8294 23 6 5.1354 -6.6263 -1.8397 24 1 -0.4850 0.8400 -0.0004 25 1 -0.3716 -1.6404 1.3326 26 1 -1.3141 -3.9686 1.5310 27 1 3.5483 -4.3362 -3.9015 28 1 4.4684 -5.6799 -5.5360 29 1 5.1576 -7.9487 -4.3072 30 1 6.4960 -6.9840 -4.9684 31 1 6.8160 -7.7738 -2.5633 32 1 6.9684 -6.0130 -2.8038 33 1 5.5201 -6.6492 -0.8201 34 1 4.3779 -7.4004 -1.9629 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870043790.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:21 Heat of formation + Delta-G solvation = -76.490630 kcal Electronic energy + Delta-G solvation = -18971.998367 eV Core-core repulsion = 15960.264258 eV Total energy + Delta-G solvation = -3011.734110 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.076 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.30317 -39.25823 -38.25797 -36.53360 -35.11571 -32.09700 -31.42046 -30.63223 -28.56881 -25.03714 -23.83159 -23.30694 -22.22516 -20.70499 -19.53391 -18.98551 -18.40164 -17.55211 -17.14512 -16.76835 -16.42441 -15.71940 -15.40235 -14.67430 -14.42646 -14.29945 -13.97743 -13.83846 -13.75567 -13.55158 -13.29681 -13.16880 -12.95821 -12.84245 -12.23983 -12.21634 -12.05222 -11.93122 -11.63297 -11.48915 -11.13576 -10.96468 -10.72631 -10.07708 -9.46310 -9.12372 -8.99848 -6.64524 0.04082 1.13786 1.29846 1.31775 1.34306 1.46482 1.73468 1.87229 2.11773 2.30679 2.39972 3.18547 3.65659 3.73336 4.04104 4.12279 4.27711 4.33825 4.38462 4.52977 4.69154 4.81198 4.87478 4.96187 5.02398 5.10323 5.11984 5.23079 5.31120 5.35783 5.55705 5.59429 5.69548 5.86904 5.87484 6.27996 6.45379 6.61401 7.42120 7.92698 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.019635 B = 0.005489 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.680007 B = 5099.735913 C = 6160.130191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.034 3.966 3 Si 0.995 3.005 4 H -0.264 1.264 5 H -0.242 1.242 6 H -0.262 1.262 7 C -0.394 4.394 8 H 0.088 0.912 9 C 0.116 3.884 10 C -0.134 4.134 11 C -0.178 4.178 12 S 0.016 5.984 13 C -0.458 4.458 14 C 0.524 3.476 15 O -0.581 6.581 16 O -0.363 6.363 17 C 0.113 3.887 18 H 0.058 0.942 19 C -0.200 4.200 20 C -0.122 4.122 21 C -0.092 4.092 22 C -0.111 4.111 23 C -0.109 4.109 24 H 0.308 0.692 25 H 0.147 0.853 26 H 0.184 0.816 27 H 0.072 0.928 28 H 0.122 0.878 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.990 -7.316 -3.137 9.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.188 4.188 3 Si 0.813 3.187 4 H -0.188 1.188 5 H -0.165 1.165 6 H -0.186 1.186 7 C -0.424 4.424 8 H 0.106 0.894 9 C 0.105 3.895 10 C -0.167 4.167 11 C -0.313 4.313 12 S 0.272 5.728 13 C -0.573 4.573 14 C 0.382 3.618 15 O -0.481 6.481 16 O -0.282 6.282 17 C 0.058 3.942 18 H 0.076 0.924 19 C -0.218 4.218 20 C -0.140 4.140 21 C -0.128 4.128 22 C -0.149 4.149 23 C -0.147 4.147 24 H 0.120 0.880 25 H 0.164 0.836 26 H 0.201 0.799 27 H 0.090 0.910 28 H 0.140 0.860 29 H 0.112 0.888 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.896 -8.521 -3.431 10.409 hybrid contribution 0.079 2.585 0.052 2.587 sum 4.975 -5.936 -3.379 8.450 Atomic orbital electron populations 1.69623 1.08936 1.32720 1.28571 1.27174 0.95898 1.05065 0.90700 0.85012 0.79157 0.74587 0.79945 1.18842 1.16530 1.18575 1.20260 0.97200 0.90777 1.34127 0.89424 1.17373 0.91556 0.91936 0.88597 1.20539 0.96685 0.97755 1.01684 1.25735 1.04221 0.96121 1.05181 1.82926 1.18031 1.11395 1.60447 1.21453 1.07118 0.98095 1.30668 1.18475 0.85210 0.80304 0.77818 1.90652 1.54425 1.42924 1.60082 1.86269 1.42398 1.31833 1.67698 1.21101 0.84707 0.99696 0.88696 0.92386 1.22271 1.03009 1.01452 0.95098 1.22399 0.97277 0.95643 0.98669 1.20629 0.98050 0.96680 0.97444 1.21633 0.96085 1.03440 0.93693 1.21699 0.98721 0.93307 1.00924 0.88048 0.83612 0.79898 0.90992 0.86032 0.88790 0.88107 0.87796 0.91902 0.90952 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -36.35 10.87 21.89 0.24 -36.12 16 2 C 0.03 1.63 5.37 85.38 0.46 2.09 16 3 Si 0.99 36.93 29.57 68.60 2.03 38.95 16 4 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 5 H -0.24 -7.81 7.11 99.48 0.71 -7.10 16 6 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 7 C -0.39 -21.93 8.40 23.33 0.20 -21.73 16 8 H 0.09 5.21 6.07 -2.91 -0.02 5.19 16 9 C 0.12 6.47 5.53 -22.03 -0.12 6.35 16 10 C -0.13 -6.57 8.81 21.44 0.19 -6.38 16 11 C -0.18 -7.58 11.11 66.64 0.74 -6.84 16 12 S 0.02 0.72 23.02 -56.49 -1.30 -0.58 16 13 C -0.46 -25.25 6.36 23.49 0.15 -25.10 16 14 C 0.52 29.10 7.68 68.69 0.53 29.62 16 15 O -0.58 -34.64 13.56 19.20 0.26 -34.38 16 16 O -0.36 -17.53 9.49 -59.23 -0.56 -18.09 16 17 C 0.11 4.49 2.66 29.66 0.08 4.57 16 18 H 0.06 2.54 7.10 -2.39 -0.02 2.53 16 19 C -0.20 -7.30 9.38 27.04 0.25 -7.05 16 20 C -0.12 -3.25 9.80 27.04 0.27 -2.98 16 21 C -0.09 -1.73 6.12 29.66 0.18 -1.55 16 22 C -0.11 -2.28 6.01 30.73 0.18 -2.10 16 23 C -0.11 -3.14 5.65 30.73 0.17 -2.97 16 24 H 0.31 12.46 8.29 -92.71 -0.77 11.69 16 25 H 0.15 6.95 6.37 -2.91 -0.02 6.93 16 26 H 0.18 6.08 8.06 -2.91 -0.02 6.05 16 27 H 0.07 3.05 8.06 -2.91 -0.02 3.03 16 28 H 0.12 2.77 8.06 -2.91 -0.02 2.75 16 29 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 1.35 8.12 -2.39 -0.02 1.34 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.08 2.18 8.13 -2.39 -0.02 2.16 16 Total: -1.00 -66.78 301.53 5.05 -61.73 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 1.11 Total: 22.56 kcal Atomic # 6 Polarization: -37.36 SS G_CDS: 3.28 Total: -34.08 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.24 Total: -36.12 kcal Atomic # 8 Polarization: -52.16 SS G_CDS: -0.30 Total: -52.47 kcal Atomic # 14 Polarization: 36.93 SS G_CDS: 2.03 Total: 38.95 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -1.30 Total: -0.58 kcal Total: -66.78 5.05 -61.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870043790.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.764 kcal (2) G-P(sol) polarization free energy of solvation -66.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds