Wall clock time and date at job start Tue Mar 31 2020 01:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47239 * 2 1 4 4 C 1.52999 * 109.47052 * 60.00153 * 3 2 1 5 5 C 1.47201 * 109.46840 * 299.99891 * 3 2 1 6 6 N 3.43552 * 83.99635 * 321.44605 * 2 1 3 7 7 N 1.46501 * 109.46913 * 180.02562 * 3 2 1 8 8 C 1.34778 * 119.99565 * 180.02562 * 7 3 2 9 9 O 1.21752 * 120.00270 * 359.97438 * 8 7 3 10 10 C 1.46238 * 119.99660 * 179.97438 * 8 7 3 11 11 S 1.75668 * 125.22967 * 0.02562 * 10 8 7 12 12 C 1.75473 * 92.09212 * 179.97438 * 11 10 8 13 13 C 1.32761 * 111.36604 * 0.02562 * 12 11 10 14 14 C 1.39551 * 125.22668 * 179.72103 * 10 8 7 15 15 C 1.40528 * 123.71580 * 0.02562 * 14 10 8 16 16 H 1.08000 * 120.00215 * 23.44280 * 15 14 10 17 17 C 1.40306 * 120.00000 * 203.44265 * 15 14 10 18 18 N 1.30636 * 120.00198 * 9.79647 * 17 15 14 19 19 Si 1.86803 * 119.99946 * 189.79592 * 17 15 14 20 20 H 1.48507 * 109.47134 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47283 * 119.99854 * 19 17 15 22 22 H 1.48501 * 109.47337 * 240.00050 * 19 17 15 23 23 H 1.09012 * 109.46577 * 300.00127 * 1 2 3 24 24 H 1.08998 * 109.47487 * 59.99467 * 1 2 3 25 25 H 1.08994 * 109.47301 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46904 * 239.99963 * 2 1 3 27 27 H 1.08998 * 109.47036 * 120.00248 * 2 1 3 28 28 H 1.08995 * 109.47373 * 60.00275 * 4 3 2 29 29 H 1.09004 * 109.46731 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.47191 * 300.00019 * 4 3 2 31 31 H 0.96996 * 120.00370 * 359.97438 * 7 3 2 32 32 H 1.08007 * 124.31414 * 180.02562 * 12 11 10 33 33 H 1.07991 * 122.78513 * 179.97438 * 13 12 11 34 34 H 0.97006 * 119.99840 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1638 1.2493 5 6 1.5494 2.1364 -1.2019 6 7 1.1707 2.6719 -2.1295 7 7 3.5051 1.4424 -0.0006 8 6 4.1789 2.6097 -0.0002 9 8 3.5702 3.6641 0.0002 10 6 5.6413 2.6096 -0.0003 11 16 6.6546 1.1746 -0.0015 12 6 8.1240 2.1338 -0.0015 13 6 7.8532 3.4335 -0.0001 14 6 6.4463 3.7495 -0.0054 15 6 5.9414 5.0610 -0.0108 16 1 4.9468 5.2582 0.3609 17 6 6.7296 6.1141 -0.4989 18 7 7.8490 5.8579 -1.1217 19 14 6.1781 7.8826 -0.2584 20 1 4.8849 7.9030 0.4715 21 1 7.2019 8.6179 0.5268 22 1 6.0088 8.5329 -1.5827 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.8934 1.6500 2.1392 29 1 1.8939 3.1913 1.2494 30 1 0.4401 2.1638 1.2493 31 1 3.9900 0.6024 -0.0006 32 1 9.1215 1.7196 -0.0025 33 1 8.6227 4.1911 0.0005 34 1 8.3940 6.5861 -1.4589 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875483305.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:27 Heat of formation + Delta-G solvation = 4.047041 kcal Electronic energy + Delta-G solvation = -19127.528204 eV Core-core repulsion = 16151.579221 eV Total energy + Delta-G solvation = -2975.948983 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.39605 -37.01198 -35.82461 -34.81426 -33.11176 -32.24762 -29.47589 -28.64020 -26.32588 -24.84978 -22.29493 -22.06885 -20.22534 -18.82431 -17.75906 -17.10576 -15.77705 -15.63294 -15.21228 -14.59242 -14.27042 -13.89235 -13.74330 -13.36708 -12.75720 -12.58246 -12.49350 -12.29974 -12.17463 -11.97535 -11.84386 -11.65477 -11.53099 -11.44389 -11.17078 -11.03140 -10.94699 -10.77371 -10.43436 -10.17426 -9.69212 -9.30460 -8.60345 -8.46824 -7.54721 -7.18452 -7.09915 -4.58372 2.09819 2.92175 2.97725 2.98048 3.07451 3.10512 3.20074 3.59324 3.73480 3.82166 4.04787 4.10186 4.45465 4.74961 4.95492 5.18652 5.23132 5.42585 5.52918 5.76545 5.86795 5.92371 6.00192 6.01195 6.10020 6.55135 6.58069 6.78436 7.07315 7.11546 7.16123 7.41755 7.64390 7.97881 8.28835 8.34124 8.54020 8.69882 9.45802 9.80844 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.017964 B = 0.006336 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.257928 B = 4418.101401 C = 5584.077239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C 0.282 3.718 4 C -0.162 4.162 5 C 0.217 3.783 6 N -0.433 5.433 7 N -0.741 5.741 8 C 0.601 3.399 9 O -0.552 6.552 10 C -0.431 4.431 11 S -0.052 6.052 12 C -0.203 4.203 13 C -0.099 4.099 14 C 0.141 3.859 15 C -0.373 4.373 16 H 0.113 0.887 17 C 0.067 3.933 18 N -0.774 5.774 19 Si 0.924 3.076 20 H -0.252 1.252 21 H -0.269 1.269 22 H -0.270 1.270 23 H 0.066 0.934 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.398 0.602 32 H 0.138 0.862 33 H 0.145 0.855 34 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.741 -8.271 4.895 10.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.161 4.161 3 C 0.191 3.809 4 C -0.221 4.221 5 C -0.103 4.103 6 N -0.109 5.109 7 N -0.396 5.396 8 C 0.399 3.601 9 O -0.435 6.435 10 C -0.550 4.550 11 S 0.203 5.797 12 C -0.337 4.337 13 C -0.131 4.131 14 C 0.130 3.870 15 C -0.403 4.403 16 H 0.131 0.869 17 C -0.155 4.155 18 N -0.398 5.398 19 Si 0.747 3.253 20 H -0.175 1.175 21 H -0.194 1.194 22 H -0.195 1.195 23 H 0.085 0.915 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.108 0.892 28 H 0.092 0.908 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.233 0.767 32 H 0.156 0.844 33 H 0.163 0.837 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.807 -8.117 3.371 10.534 hybrid contribution 0.876 1.562 0.158 1.798 sum -4.931 -6.555 3.529 8.930 Atomic orbital electron populations 1.21846 0.94413 1.02310 1.02664 1.21784 0.97156 0.93119 1.04034 1.17494 0.82268 0.93833 0.87333 1.22299 1.00875 1.03852 0.95102 1.29408 0.93262 0.93258 0.94372 1.81050 1.09286 1.08921 1.11663 1.46053 1.03208 1.09791 1.80556 1.16895 0.85980 0.82153 0.75097 1.90656 1.69032 1.30775 1.52993 1.22456 0.92855 0.93815 1.45866 1.82663 0.99164 1.12850 1.85027 1.24942 0.99692 0.97414 1.11667 1.21727 0.97560 0.94728 0.99121 1.17933 0.89326 0.92476 0.87270 1.20108 1.01869 0.89872 1.28471 0.86933 1.26398 0.93571 1.03228 0.92338 1.69673 1.10681 1.35937 1.23556 0.85971 0.80491 0.79420 0.79451 1.17545 1.19367 1.19480 0.91526 0.92672 0.91807 0.90643 0.89240 0.90808 0.89108 0.91574 0.76692 0.84449 0.83735 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.31 37.16 0.35 -1.08 16 2 C -0.12 -1.29 5.08 -26.73 -0.14 -1.43 16 3 C 0.28 4.30 0.79 -134.60 -0.11 4.19 16 4 C -0.16 -2.32 8.01 37.16 0.30 -2.02 16 5 C 0.22 4.07 11.48 -20.76 -0.24 3.83 16 6 N -0.43 -9.13 18.54 42.15 0.78 -8.35 16 7 N -0.74 -13.29 5.08 -51.65 -0.26 -13.55 16 8 C 0.60 13.96 7.17 -13.05 -0.09 13.86 16 9 O -0.55 -14.35 11.65 5.14 0.06 -14.29 16 10 C -0.43 -10.53 6.51 -35.88 -0.23 -10.76 16 11 S -0.05 -1.06 22.25 -107.50 -2.39 -3.45 16 12 C -0.20 -4.29 11.07 28.86 0.32 -3.97 16 13 C -0.10 -2.36 9.04 -39.12 -0.35 -2.71 16 14 C 0.14 3.68 5.67 -106.21 -0.60 3.08 16 15 C -0.37 -9.90 8.52 -37.94 -0.32 -10.22 16 16 H 0.11 3.13 6.04 -52.49 -0.32 2.82 16 17 C 0.07 1.62 5.39 -17.28 -0.09 1.52 16 18 N -0.77 -18.60 10.82 55.57 0.60 -18.00 16 19 Si 0.92 18.56 29.57 -169.99 -5.03 13.53 16 20 H -0.25 -5.22 7.11 56.52 0.40 -4.82 16 21 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 23 H 0.07 0.56 6.43 -51.92 -0.33 0.22 16 24 H 0.05 0.60 7.23 -51.93 -0.38 0.22 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.09 1.64 6.16 -51.93 -0.32 1.32 16 30 H 0.07 0.77 6.43 -51.93 -0.33 0.44 16 31 H 0.40 6.31 7.55 -40.82 -0.31 6.00 16 32 H 0.14 2.45 8.06 -52.48 -0.42 2.03 16 33 H 0.15 3.42 6.41 -52.49 -0.34 3.09 16 34 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16 LS Contribution 302.43 15.07 4.56 4.56 Total: -1.00 -30.07 302.43 -6.47 -36.55 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -3.57 Total: 8.70 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -1.22 Total: -5.69 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 1.12 Total: -39.91 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.06 Total: -14.29 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Atomic # 16 Polarization: -1.06 SS G_CDS: -2.39 Total: -3.45 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.07 -6.47 -36.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875483305.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.593 kcal (2) G-P(sol) polarization free energy of solvation -30.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds