Wall clock time and date at job start Tue Mar 31 2020 01:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47239 * 2 1 4 4 C 1.52999 * 109.47052 * 60.00153 * 3 2 1 5 5 C 1.47201 * 109.46840 * 299.99891 * 3 2 1 6 6 N 3.43552 * 83.99635 * 321.44605 * 2 1 3 7 7 N 1.46501 * 109.46913 * 180.02562 * 3 2 1 8 8 C 1.34778 * 119.99565 * 180.02562 * 7 3 2 9 9 O 1.21752 * 120.00270 * 359.97438 * 8 7 3 10 10 C 1.46238 * 119.99660 * 179.97438 * 8 7 3 11 11 S 1.75668 * 125.22967 * 0.02562 * 10 8 7 12 12 C 1.75473 * 92.09212 * 179.97438 * 11 10 8 13 13 C 1.32761 * 111.36604 * 0.02562 * 12 11 10 14 14 C 1.39551 * 125.22668 * 179.72103 * 10 8 7 15 15 C 1.40528 * 123.71580 * 0.02562 * 14 10 8 16 16 H 1.08000 * 120.00215 * 23.44280 * 15 14 10 17 17 C 1.40306 * 120.00000 * 203.44265 * 15 14 10 18 18 N 1.30636 * 120.00198 * 9.79647 * 17 15 14 19 19 Si 1.86803 * 119.99946 * 189.79592 * 17 15 14 20 20 H 1.48507 * 109.47134 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47283 * 119.99854 * 19 17 15 22 22 H 1.48501 * 109.47337 * 240.00050 * 19 17 15 23 23 H 1.09012 * 109.46577 * 300.00127 * 1 2 3 24 24 H 1.08998 * 109.47487 * 59.99467 * 1 2 3 25 25 H 1.08994 * 109.47301 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46904 * 239.99963 * 2 1 3 27 27 H 1.08998 * 109.47036 * 120.00248 * 2 1 3 28 28 H 1.08995 * 109.47373 * 60.00275 * 4 3 2 29 29 H 1.09004 * 109.46731 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.47191 * 300.00019 * 4 3 2 31 31 H 0.96996 * 120.00370 * 359.97438 * 7 3 2 32 32 H 1.08007 * 124.31414 * 180.02562 * 12 11 10 33 33 H 1.07991 * 122.78513 * 179.97438 * 13 12 11 34 34 H 0.97006 * 119.99840 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1638 1.2493 5 6 1.5494 2.1364 -1.2019 6 7 1.1707 2.6719 -2.1295 7 7 3.5051 1.4424 -0.0006 8 6 4.1789 2.6097 -0.0002 9 8 3.5702 3.6641 0.0002 10 6 5.6413 2.6096 -0.0003 11 16 6.6546 1.1746 -0.0015 12 6 8.1240 2.1338 -0.0015 13 6 7.8532 3.4335 -0.0001 14 6 6.4463 3.7495 -0.0054 15 6 5.9414 5.0610 -0.0108 16 1 4.9468 5.2582 0.3609 17 6 6.7296 6.1141 -0.4989 18 7 7.8490 5.8579 -1.1217 19 14 6.1781 7.8826 -0.2584 20 1 4.8849 7.9030 0.4715 21 1 7.2019 8.6179 0.5268 22 1 6.0088 8.5329 -1.5827 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.8934 1.6500 2.1392 29 1 1.8939 3.1913 1.2494 30 1 0.4401 2.1638 1.2493 31 1 3.9900 0.6024 -0.0006 32 1 9.1215 1.7196 -0.0025 33 1 8.6227 4.1911 0.0005 34 1 8.3940 6.5861 -1.4589 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875483305.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:24 Heat of formation + Delta-G solvation = -15.369749 kcal Electronic energy + Delta-G solvation = -19128.370179 eV Core-core repulsion = 16151.579221 eV Total energy + Delta-G solvation = -2976.790958 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.92496 -38.63283 -37.57092 -36.30382 -34.91960 -33.62775 -30.98896 -30.05587 -28.02709 -26.08884 -23.95131 -23.26255 -21.88734 -20.63078 -19.41949 -18.57486 -17.57538 -17.11519 -16.68417 -16.11543 -15.51124 -15.43560 -15.40314 -14.78856 -14.25139 -14.18217 -14.08963 -13.74614 -13.58096 -13.43257 -13.21004 -13.10196 -12.95367 -12.77331 -12.66528 -12.64896 -12.11353 -12.02771 -11.98469 -11.69321 -11.42081 -11.07030 -10.28819 -10.20360 -9.35843 -8.91932 -8.87340 -6.45490 0.30210 1.29664 1.31208 1.37273 1.45983 1.50872 1.73394 1.79017 1.96181 2.14661 2.45934 2.62268 2.94666 3.32506 3.69750 3.93783 4.35199 4.39475 4.45565 4.64722 4.78946 4.87281 4.94755 5.00016 5.10477 5.13484 5.26353 5.31175 5.39159 5.48448 5.56877 5.63869 5.83677 6.38771 6.49378 6.57977 6.70439 6.93248 7.70338 8.05498 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.017964 B = 0.006336 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.257928 B = 4418.101401 C = 5584.077239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C 0.274 3.726 4 C -0.159 4.159 5 C 0.229 3.771 6 N -0.483 5.483 7 N -0.725 5.725 8 C 0.594 3.406 9 O -0.587 6.587 10 C -0.466 4.466 11 S 0.021 5.979 12 C -0.191 4.191 13 C -0.132 4.132 14 C 0.113 3.887 15 C -0.416 4.416 16 H 0.085 0.915 17 C 0.036 3.964 18 N -0.794 5.794 19 Si 0.984 3.016 20 H -0.270 1.270 21 H -0.244 1.244 22 H -0.264 1.264 23 H 0.077 0.923 24 H 0.032 0.968 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.123 0.877 28 H 0.099 0.901 29 H 0.046 0.954 30 H 0.093 0.907 31 H 0.411 0.589 32 H 0.176 0.824 33 H 0.139 0.861 34 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.595 -10.595 5.748 12.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C 0.184 3.816 4 C -0.218 4.218 5 C -0.090 4.090 6 N -0.160 5.160 7 N -0.380 5.380 8 C 0.391 3.609 9 O -0.472 6.472 10 C -0.584 4.584 11 S 0.276 5.724 12 C -0.325 4.325 13 C -0.164 4.164 14 C 0.102 3.898 15 C -0.447 4.447 16 H 0.103 0.897 17 C -0.184 4.184 18 N -0.418 5.418 19 Si 0.804 3.196 20 H -0.195 1.195 21 H -0.168 1.168 22 H -0.189 1.189 23 H 0.095 0.905 24 H 0.051 0.949 25 H 0.109 0.891 26 H 0.099 0.901 27 H 0.141 0.859 28 H 0.118 0.882 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.248 0.752 32 H 0.193 0.807 33 H 0.156 0.844 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.656 -10.507 4.223 12.658 hybrid contribution 0.792 2.096 -0.098 2.243 sum -4.864 -8.411 4.125 10.555 Atomic orbital electron populations 1.21870 0.93192 1.03922 1.02118 1.21876 0.98036 0.89343 1.05973 1.18152 0.80436 0.96912 0.86133 1.22284 1.02636 1.01329 0.95505 1.30236 0.92140 0.92221 0.94420 1.81040 1.10899 1.10642 1.13462 1.45818 1.04591 1.08671 1.78914 1.17029 0.86060 0.83016 0.74785 1.90646 1.69778 1.32550 1.54212 1.23034 0.94358 0.95910 1.45131 1.82214 0.97013 1.09576 1.83569 1.25464 1.01953 0.96752 1.08367 1.21601 0.96442 0.95902 1.02461 1.18376 0.90964 0.93021 0.87477 1.20044 1.01539 0.91634 1.31500 0.89718 1.27003 0.93597 1.06129 0.91697 1.69656 1.11163 1.37388 1.23624 0.85115 0.79687 0.75272 0.79489 1.19451 1.16785 1.18914 0.90460 0.94860 0.89130 0.90086 0.85925 0.88218 0.93490 0.88853 0.75206 0.80652 0.84395 0.88887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.31 71.98 0.67 -1.66 16 2 C -0.11 -2.00 5.08 30.60 0.16 -1.85 16 3 C 0.27 7.95 0.79 1.80 0.00 7.95 16 4 C -0.16 -4.32 8.01 71.98 0.58 -3.74 16 5 C 0.23 8.62 11.48 89.44 1.03 9.65 16 6 N -0.48 -20.90 18.54 20.01 0.37 -20.53 16 7 N -0.72 -25.15 5.08 -435.53 -2.21 -27.37 16 8 C 0.59 28.03 7.17 86.32 0.62 28.65 16 9 O -0.59 -31.94 11.65 -4.51 -0.05 -31.99 16 10 C -0.47 -22.89 6.51 24.67 0.16 -22.73 16 11 S 0.02 0.79 22.25 -56.49 -1.26 -0.46 16 12 C -0.19 -7.69 11.07 66.64 0.74 -6.95 16 13 C -0.13 -6.29 9.04 22.61 0.20 -6.09 16 14 C 0.11 6.07 5.67 -20.89 -0.12 5.95 16 15 C -0.42 -23.31 8.52 23.33 0.20 -23.11 16 16 H 0.08 5.08 6.04 -2.91 -0.02 5.06 16 17 C 0.04 1.78 5.39 85.37 0.46 2.24 16 18 N -0.79 -38.94 10.82 21.89 0.24 -38.70 16 19 Si 0.98 39.24 29.57 68.60 2.03 41.27 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 21 H -0.24 -8.70 7.11 99.48 0.71 -7.99 16 22 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 23 H 0.08 1.01 6.43 -2.38 -0.02 0.99 16 24 H 0.03 0.65 7.23 -2.39 -0.02 0.64 16 25 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.05 1.73 6.16 -2.39 -0.01 1.71 16 30 H 0.09 2.00 6.43 -2.39 -0.02 1.98 16 31 H 0.41 11.98 7.55 -92.71 -0.70 11.28 16 32 H 0.18 5.60 8.06 -2.91 -0.02 5.57 16 33 H 0.14 6.66 6.41 -2.92 -0.02 6.64 16 34 H 0.30 12.96 8.29 -92.70 -0.77 12.19 16 Total: -1.00 -70.00 302.43 4.26 -65.74 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.45 Total: 23.72 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: 4.69 Total: -11.67 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -1.60 Total: -86.60 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.05 Total: -31.99 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.27 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -1.26 Total: -0.46 kcal Total: -70.00 4.26 -65.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875483305.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.368 kcal (2) G-P(sol) polarization free energy of solvation -69.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds