Wall clock time and date at job start Tue Mar 31 2020 00:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86801 * 120.00060 * 2 1 4 4 H 1.48498 * 109.47124 * 240.00123 * 3 2 1 5 5 H 1.48499 * 109.47127 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47261 * 119.99840 * 3 2 1 7 7 C 1.40031 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00121 * 180.02562 * 7 2 1 9 9 C 1.41338 * 119.99957 * 0.02562 * 7 2 1 10 10 C 1.40607 * 119.78885 * 179.97438 * 9 7 2 11 11 C 1.38305 * 119.12813 * 179.97438 * 10 9 7 12 12 C 1.38700 * 118.67159 * 359.97438 * 11 10 9 13 13 C 1.39630 * 119.49344 * 0.02562 * 12 11 10 14 14 N 1.39275 * 119.57546 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99858 * 174.57526 * 14 13 12 16 16 O 1.21266 * 120.00205 * 4.86808 * 15 14 13 17 17 C 1.50701 * 119.99760 * 184.86405 * 15 14 13 18 18 S 1.81399 * 109.47215 * 180.02562 * 17 15 14 19 19 C 1.81402 * 103.00023 * 179.97438 * 18 17 15 20 20 C 1.53001 * 117.49940 * 243.74814 * 19 18 17 21 21 C 1.53004 * 117.49733 * 175.08635 * 19 18 17 22 22 N 1.31926 * 120.85247 * 0.25707 * 13 12 11 23 23 H 0.96995 * 120.00116 * 0.02562 * 1 2 3 24 24 H 1.07998 * 120.43633 * 0.02562 * 10 9 7 25 25 H 1.08001 * 120.67023 * 179.97438 * 11 10 9 26 26 H 1.07999 * 120.25515 * 180.02562 * 12 11 10 27 27 H 0.96998 * 119.99415 * 354.31287 * 14 13 12 28 28 H 1.09010 * 109.47122 * 300.00327 * 17 15 14 29 29 H 1.08999 * 109.47181 * 60.00440 * 17 15 14 30 30 H 1.08999 * 115.54771 * 29.41795 * 19 18 17 31 31 H 1.09002 * 117.49632 * 359.97438 * 20 19 18 32 32 H 1.08991 * 117.50166 * 145.02461 * 20 19 18 33 33 H 1.09003 * 117.49657 * 214.98144 * 21 19 18 34 34 H 1.08995 * 117.49971 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6964 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0875 -1.2126 -0.0001 9 6 1.3010 -2.4367 -0.0016 10 6 2.0085 -3.6518 -0.0027 11 6 1.3033 -4.8415 -0.0032 12 6 -0.0829 -4.7934 -0.0021 13 6 -0.7278 -3.5550 -0.0011 14 7 -2.1196 -3.5047 -0.0005 15 6 -2.7510 -2.3192 0.1109 16 8 -2.1104 -1.2897 0.1217 17 6 -4.2532 -2.2732 0.2219 18 16 -4.7971 -0.5478 0.3561 19 6 -6.6009 -0.6968 0.4774 20 6 -7.4373 -0.0906 -0.6513 21 6 -7.4006 0.5844 0.7222 22 7 -0.0357 -2.4318 -0.0062 23 1 -0.4850 0.8400 -0.0004 24 1 3.0885 -3.6560 -0.0023 25 1 1.8214 -5.7891 -0.0045 26 1 -0.6591 -5.7069 -0.0021 27 1 -2.6344 -4.3225 -0.0841 28 1 -4.6972 -2.7258 -0.6649 29 1 -4.5692 -2.8240 1.1078 30 1 -6.9669 -1.6144 0.9380 31 1 -6.9036 0.3981 -1.4665 32 1 -8.3537 -0.6090 -0.9329 33 1 -8.2931 0.5096 1.3436 34 1 -6.8429 1.5166 0.8108 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882471984.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:05 Heat of formation + Delta-G solvation = 54.910083 kcal Electronic energy + Delta-G solvation = -18682.429001 eV Core-core repulsion = 15708.685605 eV Total energy + Delta-G solvation = -2973.743396 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.25363 -37.44521 -36.77299 -34.12925 -33.00482 -30.47841 -30.08299 -28.36292 -25.48529 -22.99551 -22.56610 -22.02296 -21.18288 -19.41328 -17.77415 -16.77641 -16.27941 -16.06394 -15.36629 -14.99953 -14.68286 -14.45293 -14.04600 -13.58971 -13.13625 -12.89798 -12.77419 -12.23945 -11.87493 -11.78723 -11.70167 -11.13787 -11.07476 -10.94988 -10.66511 -10.62098 -10.45508 -9.94281 -9.75484 -9.68048 -9.07717 -9.01025 -7.96769 -7.39767 -7.22983 -6.98029 -6.12061 -4.38867 1.62285 2.66398 2.76726 3.07846 3.20069 3.21189 3.28423 3.54978 3.66711 3.82399 4.09102 4.65157 4.74875 4.79006 4.92872 5.15436 5.24715 5.40999 5.43878 5.50952 5.78787 5.94528 6.04334 6.11143 6.47935 6.65124 6.82314 6.84803 7.25122 7.53861 7.61211 7.81120 8.02991 8.19105 8.44355 8.73953 9.05132 9.18931 10.24309 10.50406 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.016654 B = 0.005520 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.905228 B = 5071.524558 C = 6668.099161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.654 5.654 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.424 4.424 8 H 0.082 0.918 9 C 0.271 3.729 10 C -0.305 4.305 11 C -0.036 4.036 12 C -0.358 4.358 13 C 0.372 3.628 14 N -0.663 5.663 15 C 0.484 3.516 16 O -0.386 6.386 17 C -0.130 4.130 18 S -0.120 6.120 19 C -0.164 4.164 20 C -0.164 4.164 21 C -0.147 4.147 22 N -0.474 5.474 23 H 0.275 0.725 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.399 0.601 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.450 -2.082 0.202 13.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.272 5.272 2 C -0.172 4.172 3 Si 0.721 3.279 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.454 4.454 8 H 0.100 0.900 9 C 0.146 3.854 10 C -0.328 4.328 11 C -0.060 4.060 12 C -0.383 4.383 13 C 0.133 3.867 14 N -0.311 5.311 15 C 0.263 3.737 16 O -0.249 6.249 17 C -0.282 4.282 18 S 0.110 5.890 19 C -0.293 4.293 20 C -0.204 4.204 21 C -0.186 4.186 22 N -0.193 5.193 23 H 0.087 0.913 24 H 0.115 0.885 25 H 0.114 0.886 26 H 0.109 0.891 27 H 0.233 0.767 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.132 0.868 31 H 0.123 0.877 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.972 0.639 0.251 12.990 hybrid contribution -0.329 -2.020 0.012 2.046 sum -13.302 -1.380 0.263 13.376 Atomic orbital electron populations 1.70264 1.05756 1.27806 1.23408 1.26171 0.95142 1.00581 0.95335 0.86575 0.80187 0.81552 0.79626 1.19190 1.20316 1.19178 1.19564 0.94056 0.89397 1.42410 0.89973 1.18371 0.87104 0.91968 0.87986 1.21625 0.98571 0.93528 1.19059 1.20558 0.93163 0.96531 0.95794 1.20462 0.94794 0.94849 1.28239 1.18571 0.83025 0.91019 0.94053 1.43263 1.05205 1.08858 1.73752 1.19793 0.87371 0.85533 0.80981 1.91193 1.64340 1.30434 1.38896 1.23636 0.99215 0.99338 1.05996 1.87403 0.98007 1.07566 1.96059 1.24308 0.95973 1.01315 1.07704 1.23282 1.01365 1.03393 0.92388 1.22898 1.00841 0.95365 0.99477 1.68679 1.07098 1.23213 1.20318 0.91314 0.88543 0.88611 0.89111 0.76737 0.88101 0.88139 0.86824 0.87686 0.88608 0.88106 0.88006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.41 9.00 55.55 0.50 -17.91 16 2 C 0.06 1.53 5.50 -17.35 -0.10 1.43 16 3 Si 0.90 19.58 29.56 -169.99 -5.02 14.56 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.42 -11.78 9.14 -37.73 -0.34 -12.13 16 8 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 9 C 0.27 7.68 6.55 -85.00 -0.56 7.12 16 10 C -0.30 -7.74 9.83 -38.66 -0.38 -8.12 16 11 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 12 C -0.36 -8.05 9.96 -38.89 -0.39 -8.44 16 13 C 0.37 9.12 7.43 -154.97 -1.15 7.97 16 14 N -0.66 -13.00 5.38 -11.40 -0.06 -13.06 16 15 C 0.48 9.79 7.81 -10.99 -0.09 9.70 16 16 O -0.39 -9.80 11.64 5.57 0.06 -9.73 16 17 C -0.13 -1.88 6.43 36.01 0.23 -1.65 16 18 S -0.12 -1.88 21.09 -107.50 -2.27 -4.15 16 19 C -0.16 -1.84 6.35 -26.73 -0.17 -2.01 16 20 C -0.16 -1.56 10.30 -26.69 -0.27 -1.84 16 21 C -0.15 -1.41 10.30 -26.69 -0.27 -1.68 16 22 N -0.47 -13.42 5.74 -10.26 -0.06 -13.48 16 23 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 24 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 25 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 26 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 27 H 0.40 5.88 8.70 -40.82 -0.36 5.53 16 28 H 0.10 1.21 8.14 -51.92 -0.42 0.79 16 29 H 0.10 1.21 8.14 -51.92 -0.42 0.79 16 30 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 309.46 15.07 4.66 4.66 Total: -1.00 -32.99 309.46 -10.20 -43.20 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -4.13 Total: 6.78 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -3.89 Total: -10.87 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.38 Total: -44.45 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.06 Total: -9.73 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Atomic # 16 Polarization: -1.88 SS G_CDS: -2.27 Total: -4.15 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.99 -10.20 -43.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471984.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.107 kcal (2) G-P(sol) polarization free energy of solvation -32.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds