Wall clock time and date at job start Tue Mar 31 2020 00:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86801 * 120.00060 * 2 1 4 4 H 1.48498 * 109.47124 * 240.00123 * 3 2 1 5 5 H 1.48499 * 109.47127 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47261 * 119.99840 * 3 2 1 7 7 C 1.40031 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00121 * 180.02562 * 7 2 1 9 9 C 1.41338 * 119.99957 * 0.02562 * 7 2 1 10 10 C 1.40607 * 119.78885 * 179.97438 * 9 7 2 11 11 C 1.38305 * 119.12813 * 179.97438 * 10 9 7 12 12 C 1.38700 * 118.67159 * 359.97438 * 11 10 9 13 13 C 1.39630 * 119.49344 * 0.02562 * 12 11 10 14 14 N 1.39275 * 119.57546 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99858 * 174.57526 * 14 13 12 16 16 O 1.21266 * 120.00205 * 4.86808 * 15 14 13 17 17 C 1.50701 * 119.99760 * 184.86405 * 15 14 13 18 18 S 1.81399 * 109.47215 * 180.02562 * 17 15 14 19 19 C 1.81402 * 103.00023 * 179.97438 * 18 17 15 20 20 C 1.53001 * 117.49940 * 243.74814 * 19 18 17 21 21 C 1.53004 * 117.49733 * 175.08635 * 19 18 17 22 22 N 1.31926 * 120.85247 * 0.25707 * 13 12 11 23 23 H 0.96995 * 120.00116 * 0.02562 * 1 2 3 24 24 H 1.07998 * 120.43633 * 0.02562 * 10 9 7 25 25 H 1.08001 * 120.67023 * 179.97438 * 11 10 9 26 26 H 1.07999 * 120.25515 * 180.02562 * 12 11 10 27 27 H 0.96998 * 119.99415 * 354.31287 * 14 13 12 28 28 H 1.09010 * 109.47122 * 300.00327 * 17 15 14 29 29 H 1.08999 * 109.47181 * 60.00440 * 17 15 14 30 30 H 1.08999 * 115.54771 * 29.41795 * 19 18 17 31 31 H 1.09002 * 117.49632 * 359.97438 * 20 19 18 32 32 H 1.08991 * 117.50166 * 145.02461 * 20 19 18 33 33 H 1.09003 * 117.49657 * 214.98144 * 21 19 18 34 34 H 1.08995 * 117.49971 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6964 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0875 -1.2126 -0.0001 9 6 1.3010 -2.4367 -0.0016 10 6 2.0085 -3.6518 -0.0027 11 6 1.3033 -4.8415 -0.0032 12 6 -0.0829 -4.7934 -0.0021 13 6 -0.7278 -3.5550 -0.0011 14 7 -2.1196 -3.5047 -0.0005 15 6 -2.7510 -2.3192 0.1109 16 8 -2.1104 -1.2897 0.1217 17 6 -4.2532 -2.2732 0.2219 18 16 -4.7971 -0.5478 0.3561 19 6 -6.6009 -0.6968 0.4774 20 6 -7.4373 -0.0906 -0.6513 21 6 -7.4006 0.5844 0.7222 22 7 -0.0357 -2.4318 -0.0062 23 1 -0.4850 0.8400 -0.0004 24 1 3.0885 -3.6560 -0.0023 25 1 1.8214 -5.7891 -0.0045 26 1 -0.6591 -5.7069 -0.0021 27 1 -2.6344 -4.3225 -0.0841 28 1 -4.6972 -2.7258 -0.6649 29 1 -4.5692 -2.8240 1.1078 30 1 -6.9669 -1.6144 0.9380 31 1 -6.9036 0.3981 -1.4665 32 1 -8.3537 -0.6090 -0.9329 33 1 -8.2931 0.5096 1.3436 34 1 -6.8429 1.5166 0.8108 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882471984.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:01 Heat of formation + Delta-G solvation = 35.097835 kcal Electronic energy + Delta-G solvation = -18683.288125 eV Core-core repulsion = 15708.685605 eV Total energy + Delta-G solvation = -2974.602520 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.95740 -39.24685 -37.56420 -35.94437 -34.85783 -32.29235 -31.75410 -30.00843 -27.41086 -24.17470 -23.57628 -23.29592 -23.01033 -21.06321 -19.60618 -18.11017 -17.84349 -17.41380 -16.64657 -16.41774 -16.29993 -16.21227 -15.58271 -14.99314 -14.78173 -14.47796 -14.44956 -13.74524 -13.42027 -13.12674 -12.85102 -12.73684 -12.57934 -12.44530 -12.32202 -11.95844 -11.80214 -11.50427 -11.43345 -10.87209 -10.80190 -10.73950 -9.90466 -9.11571 -8.85224 -8.56432 -8.05192 -6.42353 0.52660 0.90932 1.24888 1.38874 1.51023 1.52439 1.64066 2.06366 2.26071 2.33215 2.77193 2.99122 3.76413 3.85046 3.99071 4.04022 4.05212 4.17337 4.28506 4.38516 4.74109 4.74467 4.80961 4.87385 4.95850 5.03123 5.06191 5.22326 5.27315 5.67682 5.83663 5.92399 6.13313 6.36203 6.70927 6.82323 7.07120 7.62222 8.33874 8.56057 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.016654 B = 0.005520 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.905228 B = 5071.524558 C = 6668.099161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.689 5.689 2 C 0.011 3.989 3 Si 0.973 3.027 4 H -0.259 1.259 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.467 4.467 8 H 0.086 0.914 9 C 0.237 3.763 10 C -0.330 4.330 11 C -0.035 4.035 12 C -0.344 4.344 13 C 0.348 3.652 14 N -0.650 5.650 15 C 0.472 3.528 16 O -0.442 6.442 17 C -0.102 4.102 18 S -0.208 6.208 19 C -0.159 4.159 20 C -0.154 4.154 21 C -0.143 4.143 22 N -0.510 5.510 23 H 0.270 0.730 24 H 0.104 0.896 25 H 0.138 0.862 26 H 0.134 0.866 27 H 0.423 0.577 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.136 0.864 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.128 0.872 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.358 -3.789 0.274 15.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.308 5.308 2 C -0.214 4.214 3 Si 0.794 3.206 4 H -0.183 1.183 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.498 4.498 8 H 0.104 0.896 9 C 0.112 3.888 10 C -0.353 4.353 11 C -0.059 4.059 12 C -0.369 4.369 13 C 0.110 3.890 14 N -0.301 5.301 15 C 0.254 3.746 16 O -0.307 6.307 17 C -0.253 4.253 18 S 0.021 5.979 19 C -0.287 4.287 20 C -0.194 4.194 21 C -0.182 4.182 22 N -0.229 5.229 23 H 0.080 0.920 24 H 0.122 0.878 25 H 0.155 0.845 26 H 0.152 0.848 27 H 0.261 0.739 28 H 0.151 0.849 29 H 0.150 0.850 30 H 0.153 0.847 31 H 0.110 0.890 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.918 -1.131 0.318 14.964 hybrid contribution 0.155 -1.684 -0.013 1.691 sum -14.763 -2.815 0.304 15.032 Atomic orbital electron populations 1.70482 1.07239 1.28080 1.24991 1.27020 0.95994 1.03958 0.94451 0.85415 0.78661 0.76607 0.79948 1.18332 1.20061 1.18386 1.19888 0.94470 0.90496 1.44904 0.89599 1.18859 0.87942 0.93380 0.88667 1.21814 0.99235 0.93862 1.20357 1.21049 0.93616 0.97315 0.93917 1.20971 0.95158 0.95704 1.25098 1.19123 0.85040 0.91135 0.93745 1.43224 1.03637 1.10194 1.72996 1.20756 0.89726 0.84754 0.79338 1.91197 1.66230 1.32298 1.40994 1.23408 0.94511 0.98510 1.08850 1.87770 1.03580 1.10044 1.96486 1.24298 0.91772 1.02999 1.09675 1.23342 1.01560 1.02723 0.91768 1.23031 1.01033 0.94107 1.00061 1.68648 1.07410 1.25510 1.21339 0.91965 0.87770 0.84451 0.84822 0.73896 0.84948 0.85042 0.84650 0.89006 0.85849 0.85417 0.89440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -40.90 9.00 21.84 0.20 -40.70 16 2 C 0.01 0.64 5.50 85.29 0.47 1.11 16 3 Si 0.97 41.96 29.56 68.60 2.03 43.99 16 4 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 7 C -0.47 -27.15 9.14 23.47 0.21 -26.94 16 8 H 0.09 4.66 7.85 -2.91 -0.02 4.64 16 9 C 0.24 13.93 6.55 40.20 0.26 14.19 16 10 C -0.33 -16.88 9.83 22.86 0.22 -16.66 16 11 C -0.03 -1.52 10.15 22.40 0.23 -1.29 16 12 C -0.34 -14.63 9.96 22.72 0.23 -14.40 16 13 C 0.35 16.94 7.43 133.23 0.99 17.93 16 14 N -0.65 -24.68 5.38 -308.39 -1.66 -26.34 16 15 C 0.47 19.06 7.81 87.66 0.68 19.74 16 16 O -0.44 -23.28 11.64 -2.99 -0.03 -23.32 16 17 C -0.10 -2.77 6.43 71.24 0.46 -2.31 16 18 S -0.21 -6.54 21.09 -56.49 -1.19 -7.73 16 19 C -0.16 -3.20 6.35 30.60 0.19 -3.00 16 20 C -0.15 -2.55 10.30 30.62 0.32 -2.24 16 21 C -0.14 -2.45 10.30 30.62 0.32 -2.14 16 22 N -0.51 -29.72 5.74 -186.36 -1.07 -30.78 16 23 H 0.27 15.34 8.29 -92.71 -0.77 14.57 16 24 H 0.10 4.97 8.06 -2.91 -0.02 4.95 16 25 H 0.14 4.78 8.06 -2.91 -0.02 4.75 16 26 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 27 H 0.42 11.23 8.70 -92.71 -0.81 10.43 16 28 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.13 1.51 8.14 -2.39 -0.02 1.50 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -77.22 309.46 3.17 -74.05 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: 0.32 Total: 26.86 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: 4.58 Total: -16.02 kcal Atomic # 7 Polarization: -95.30 SS G_CDS: -2.53 Total: -97.83 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.03 Total: -23.32 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Atomic # 16 Polarization: -6.54 SS G_CDS: -1.19 Total: -7.73 kcal Total: -77.22 3.17 -74.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471984.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.151 kcal (2) G-P(sol) polarization free energy of solvation -77.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds