Wall clock time and date at job start Tue Mar 31 2020 00:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86801 * 120.00274 * 2 1 4 4 H 1.48498 * 109.47267 * 270.00172 * 3 2 1 5 5 H 1.48503 * 109.47162 * 30.00035 * 3 2 1 6 6 H 1.48497 * 109.47590 * 150.00074 * 3 2 1 7 7 C 1.40034 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99970 * 179.97438 * 7 2 1 9 9 C 1.41343 * 119.99562 * 0.02562 * 7 2 1 10 10 C 1.40614 * 119.78405 * 179.97438 * 9 7 2 11 11 C 1.38300 * 119.12467 * 180.02562 * 10 9 7 12 12 C 1.38698 * 118.67233 * 0.25197 * 11 10 9 13 13 C 1.39634 * 119.49434 * 359.50602 * 12 11 10 14 14 N 1.39272 * 119.57281 * 180.23046 * 13 12 11 15 15 C 1.34780 * 119.99842 * 174.62340 * 14 13 12 16 16 O 1.21272 * 119.99746 * 5.14573 * 15 14 13 17 17 C 1.50695 * 119.99866 * 185.14705 * 15 14 13 18 18 H 1.08994 * 109.60554 * 300.32077 * 17 15 14 19 19 C 1.52943 * 109.60150 * 179.97438 * 17 15 14 20 20 C 1.53713 * 112.49095 * 209.96868 * 19 17 15 21 21 S 1.83398 * 104.96847 * 2.82837 * 20 19 17 22 22 C 1.55153 * 109.60422 * 60.46344 * 17 15 14 23 23 N 1.31932 * 120.84933 * 0.50311 * 13 12 11 24 24 H 0.97005 * 119.99763 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.43682 * 0.04687 * 10 9 7 26 26 H 1.08000 * 120.66750 * 179.97438 * 11 10 9 27 27 H 1.08002 * 120.25186 * 179.71681 * 12 11 10 28 28 H 0.96994 * 120.00021 * 354.62003 * 14 13 12 29 29 H 1.08999 * 108.88989 * 330.76404 * 19 17 15 30 30 H 1.09000 * 108.89018 * 89.17582 * 19 17 15 31 31 H 1.08998 * 110.34072 * 121.69800 * 20 19 17 32 32 H 1.08995 * 110.33986 * 243.84985 * 20 19 17 33 33 H 1.08997 * 111.13418 * 279.28098 * 22 17 15 34 34 H 1.09006 * 111.13108 * 43.45415 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0464 -1.4000 5 1 1.4390 2.6527 0.7001 6 1 3.5390 1.4402 0.7000 7 6 2.0076 -1.2127 0.0005 8 1 3.0875 -1.2127 0.0001 9 6 1.3008 -2.4367 0.0005 10 6 2.0084 -3.6519 0.0005 11 6 1.3031 -4.8415 0.0000 12 6 -0.0830 -4.7934 -0.0059 13 6 -0.7279 -3.5549 -0.0006 14 7 -2.1197 -3.5046 -0.0016 15 6 -2.7513 -2.3195 0.1128 16 8 -2.1110 -1.2897 0.1227 17 6 -4.2531 -2.2742 0.2285 18 1 -4.7018 -2.7307 -0.6537 19 6 -4.7151 -0.8210 0.3459 20 6 -6.0088 -0.6795 1.1640 21 16 -6.3983 -2.3792 1.7320 22 6 -4.7012 -3.0491 1.4958 23 7 -0.0357 -2.4317 0.0000 24 1 -0.4850 0.8401 -0.0004 25 1 3.0884 -3.6561 0.0013 26 1 1.8213 -5.7891 -0.0004 27 1 -0.6592 -5.7068 -0.0110 28 1 -2.6345 -4.3225 -0.0847 29 1 -3.9287 -0.2384 0.8257 30 1 -4.8849 -0.4227 -0.6544 31 1 -5.8468 -0.0223 2.0183 32 1 -6.8130 -0.2940 0.5374 33 1 -4.7251 -4.1231 1.3118 34 1 -4.0631 -2.8123 2.3473 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882474401.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:54 Heat of formation + Delta-G solvation = 17.322987 kcal Electronic energy + Delta-G solvation = -19384.475337 eV Core-core repulsion = 16409.102042 eV Total energy + Delta-G solvation = -2975.373295 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.60585 -37.80266 -35.21668 -34.16505 -33.07820 -30.40110 -30.07917 -28.75478 -25.71893 -25.29919 -22.76382 -21.43985 -20.63525 -19.09648 -17.86235 -16.78750 -16.52934 -15.98112 -15.32562 -14.71185 -14.48434 -14.24342 -13.77312 -13.71751 -13.49777 -12.97840 -12.71689 -12.22539 -12.05037 -11.92199 -11.69987 -11.46832 -11.17777 -10.98591 -10.71706 -10.68594 -10.51614 -10.21980 -9.96665 -9.72977 -9.06662 -8.96587 -8.01210 -7.79156 -7.26419 -7.02202 -6.18936 -4.44083 1.78081 2.21937 2.71863 3.02190 3.14467 3.16777 3.23227 3.60534 3.70777 4.02875 4.58538 4.77594 4.86251 4.89941 5.00992 5.11715 5.36563 5.43758 5.64066 5.74368 5.98766 6.02200 6.08440 6.27299 6.44785 6.62884 6.78910 6.80954 7.19234 7.50269 7.57355 7.77309 8.00458 8.15024 8.40923 8.69024 9.00298 9.16260 10.19239 10.43423 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.017949 B = 0.006006 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.636014 B = 4660.672401 C = 6068.908265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.658 5.658 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.425 4.425 8 H 0.083 0.917 9 C 0.271 3.729 10 C -0.304 4.304 11 C -0.036 4.036 12 C -0.356 4.356 13 C 0.370 3.630 14 N -0.664 5.664 15 C 0.479 3.521 16 O -0.402 6.402 17 C -0.110 4.110 18 H 0.102 0.898 19 C -0.119 4.119 20 C -0.062 4.062 21 S -0.306 6.306 22 C -0.054 4.054 23 N -0.474 5.474 24 H 0.272 0.728 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.399 0.601 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.053 -2.300 0.748 10.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.276 5.276 2 C -0.171 4.171 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.455 4.455 8 H 0.101 0.899 9 C 0.146 3.854 10 C -0.327 4.327 11 C -0.061 4.061 12 C -0.382 4.382 13 C 0.132 3.868 14 N -0.311 5.311 15 C 0.258 3.742 16 O -0.265 6.265 17 C -0.134 4.134 18 H 0.120 0.880 19 C -0.158 4.158 20 C -0.211 4.211 21 S -0.080 6.080 22 C -0.202 4.202 23 N -0.193 5.193 24 H 0.083 0.917 25 H 0.115 0.885 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.232 0.768 29 H 0.115 0.885 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.127 0.873 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.293 -0.981 1.191 11.398 hybrid contribution 1.508 -0.209 -0.461 1.590 sum -9.785 -1.190 0.730 9.884 Atomic orbital electron populations 1.70318 1.05801 1.27352 1.24152 1.26171 0.95140 1.00606 0.95141 0.86512 0.80593 0.81795 0.79040 1.19643 1.20305 1.18731 1.19591 0.94096 0.89369 1.42466 0.89937 1.18387 0.87163 0.91974 0.87915 1.21634 0.98593 0.93531 1.18932 1.20567 0.93194 0.96549 0.95747 1.20498 0.94820 0.94956 1.27938 1.18612 0.83245 0.90964 0.93992 1.43381 1.05150 1.09150 1.73399 1.20390 0.88428 0.85145 0.80220 1.91150 1.64815 1.30745 1.39792 1.22251 0.95329 0.96813 0.98966 0.87980 1.21811 0.96444 0.95654 1.01885 1.23943 1.00294 0.94544 1.02270 1.87700 1.18091 1.13487 1.88722 1.24322 0.93327 1.02579 0.99976 1.68685 1.07047 1.23231 1.20324 0.91667 0.88542 0.88600 0.89070 0.76777 0.88461 0.90036 0.89153 0.88467 0.87270 0.88547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -17.75 9.00 55.55 0.50 -17.25 16 2 C 0.06 1.51 5.50 -17.34 -0.10 1.42 16 3 Si 0.90 18.97 29.56 -169.99 -5.02 13.94 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.42 -11.53 9.14 -37.73 -0.34 -11.88 16 8 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 9 C 0.27 7.50 6.55 -85.00 -0.56 6.94 16 10 C -0.30 -7.56 9.83 -38.66 -0.38 -7.94 16 11 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 12 C -0.36 -7.83 9.95 -38.89 -0.39 -8.21 16 13 C 0.37 8.77 7.43 -154.96 -1.15 7.62 16 14 N -0.66 -12.37 5.28 -11.40 -0.06 -12.43 16 15 C 0.48 8.96 7.09 -10.99 -0.08 8.88 16 16 O -0.40 -9.48 11.16 5.56 0.06 -9.42 16 17 C -0.11 -1.48 2.89 -90.66 -0.26 -1.74 16 18 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 19 C -0.12 -1.56 5.61 -26.39 -0.15 -1.70 16 20 C -0.06 -0.69 7.38 37.53 0.28 -0.42 16 21 S -0.31 -3.80 23.23 -107.50 -2.50 -6.30 16 22 C -0.05 -0.65 6.77 38.30 0.26 -0.39 16 23 N -0.47 -13.00 5.74 -10.25 -0.06 -13.06 16 24 H 0.27 6.85 8.29 -40.82 -0.34 6.51 16 25 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 26 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 27 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 28 H 0.40 5.67 8.70 -40.82 -0.36 5.32 16 29 H 0.10 1.53 6.87 -51.93 -0.36 1.17 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.10 1.29 8.10 -51.93 -0.42 0.87 16 LS Contribution 298.26 15.07 4.49 4.49 Total: -1.00 -31.38 298.26 -9.91 -41.29 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -4.06 Total: 7.36 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -3.27 Total: -8.63 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.38 Total: -42.74 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.06 Total: -9.42 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.02 Total: 13.94 kcal Atomic # 16 Polarization: -3.80 SS G_CDS: -2.50 Total: -6.30 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.38 -9.91 -41.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882474401.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.612 kcal (2) G-P(sol) polarization free energy of solvation -31.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds