Wall clock time and date at job start Tue Mar 31 2020 00:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86801 * 120.00274 * 2 1 4 4 H 1.48498 * 109.47267 * 270.00172 * 3 2 1 5 5 H 1.48503 * 109.47162 * 30.00035 * 3 2 1 6 6 H 1.48497 * 109.47590 * 150.00074 * 3 2 1 7 7 C 1.40034 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99970 * 179.97438 * 7 2 1 9 9 C 1.41343 * 119.99562 * 0.02562 * 7 2 1 10 10 C 1.40614 * 119.78405 * 179.97438 * 9 7 2 11 11 C 1.38300 * 119.12467 * 180.02562 * 10 9 7 12 12 C 1.38698 * 118.67233 * 0.25197 * 11 10 9 13 13 C 1.39634 * 119.49434 * 359.50602 * 12 11 10 14 14 N 1.39272 * 119.57281 * 180.23046 * 13 12 11 15 15 C 1.34780 * 119.99842 * 174.62340 * 14 13 12 16 16 O 1.21272 * 119.99746 * 5.14573 * 15 14 13 17 17 C 1.50695 * 119.99866 * 185.14705 * 15 14 13 18 18 H 1.08994 * 109.60554 * 300.32077 * 17 15 14 19 19 C 1.52943 * 109.60150 * 179.97438 * 17 15 14 20 20 C 1.53713 * 112.49095 * 209.96868 * 19 17 15 21 21 S 1.83398 * 104.96847 * 2.82837 * 20 19 17 22 22 C 1.55153 * 109.60422 * 60.46344 * 17 15 14 23 23 N 1.31932 * 120.84933 * 0.50311 * 13 12 11 24 24 H 0.97005 * 119.99763 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.43682 * 0.04687 * 10 9 7 26 26 H 1.08000 * 120.66750 * 179.97438 * 11 10 9 27 27 H 1.08002 * 120.25186 * 179.71681 * 12 11 10 28 28 H 0.96994 * 120.00021 * 354.62003 * 14 13 12 29 29 H 1.08999 * 108.88989 * 330.76404 * 19 17 15 30 30 H 1.09000 * 108.89018 * 89.17582 * 19 17 15 31 31 H 1.08998 * 110.34072 * 121.69800 * 20 19 17 32 32 H 1.08995 * 110.33986 * 243.84985 * 20 19 17 33 33 H 1.08997 * 111.13418 * 279.28098 * 22 17 15 34 34 H 1.09006 * 111.13108 * 43.45415 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0464 -1.4000 5 1 1.4390 2.6527 0.7001 6 1 3.5390 1.4402 0.7000 7 6 2.0076 -1.2127 0.0005 8 1 3.0875 -1.2127 0.0001 9 6 1.3008 -2.4367 0.0005 10 6 2.0084 -3.6519 0.0005 11 6 1.3031 -4.8415 0.0000 12 6 -0.0830 -4.7934 -0.0059 13 6 -0.7279 -3.5549 -0.0006 14 7 -2.1197 -3.5046 -0.0016 15 6 -2.7513 -2.3195 0.1128 16 8 -2.1110 -1.2897 0.1227 17 6 -4.2531 -2.2742 0.2285 18 1 -4.7018 -2.7307 -0.6537 19 6 -4.7151 -0.8210 0.3459 20 6 -6.0088 -0.6795 1.1640 21 16 -6.3983 -2.3792 1.7320 22 6 -4.7012 -3.0491 1.4958 23 7 -0.0357 -2.4317 0.0000 24 1 -0.4850 0.8401 -0.0004 25 1 3.0884 -3.6561 0.0013 26 1 1.8213 -5.7891 -0.0004 27 1 -0.6592 -5.7068 -0.0110 28 1 -2.6345 -4.3225 -0.0847 29 1 -3.9287 -0.2384 0.8257 30 1 -4.8849 -0.4227 -0.6544 31 1 -5.8468 -0.0223 2.0183 32 1 -6.8130 -0.2940 0.5374 33 1 -4.7251 -4.1231 1.3118 34 1 -4.0631 -2.8123 2.3473 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882474401.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:52 Heat of formation + Delta-G solvation = -1.030102 kcal Electronic energy + Delta-G solvation = -19385.271187 eV Core-core repulsion = 16409.102042 eV Total energy + Delta-G solvation = -2976.169145 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 278.083 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.16048 -39.52131 -36.47087 -35.86981 -34.87116 -32.23315 -31.45492 -30.27666 -27.50834 -26.48577 -24.28921 -23.22829 -22.12016 -20.53516 -19.56546 -18.22107 -17.98260 -17.28712 -16.59594 -16.43204 -16.26150 -15.65981 -15.38383 -15.07132 -14.74092 -14.67950 -14.13695 -13.82497 -13.51305 -13.05881 -12.93103 -12.82235 -12.72893 -12.58556 -12.52722 -12.31620 -11.79241 -11.76159 -11.50037 -11.29326 -10.86669 -10.47163 -9.89652 -9.10235 -8.82401 -8.74835 -8.06194 -6.42060 0.80859 0.90970 1.22383 1.28508 1.39624 1.50582 1.53201 2.09199 2.25834 2.28489 2.98359 3.50793 3.69691 3.76848 4.01360 4.06315 4.10628 4.23869 4.41233 4.49311 4.64910 4.74031 4.81401 4.91917 4.96107 4.99834 5.06746 5.17702 5.29394 5.68352 5.85049 5.93249 6.15196 6.36946 6.73610 6.83175 7.08093 7.65990 8.33998 8.55874 Molecular weight = 278.08amu Principal moments of inertia in cm(-1) A = 0.017949 B = 0.006006 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.636014 B = 4660.672401 C = 6068.908265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.690 5.690 2 C 0.013 3.987 3 Si 0.973 3.027 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.467 4.467 8 H 0.084 0.916 9 C 0.237 3.763 10 C -0.330 4.330 11 C -0.035 4.035 12 C -0.345 4.345 13 C 0.349 3.651 14 N -0.652 5.652 15 C 0.473 3.527 16 O -0.454 6.454 17 C -0.094 4.094 18 H 0.130 0.870 19 C -0.117 4.117 20 C -0.054 4.054 21 S -0.311 6.311 22 C -0.049 4.049 23 N -0.507 5.507 24 H 0.270 0.730 25 H 0.103 0.897 26 H 0.136 0.864 27 H 0.133 0.867 28 H 0.421 0.579 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.120 0.880 33 H 0.136 0.864 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.459 -3.528 0.594 12.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.309 5.309 2 C -0.212 4.212 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.498 4.498 8 H 0.102 0.898 9 C 0.111 3.889 10 C -0.353 4.353 11 C -0.059 4.059 12 C -0.371 4.371 13 C 0.110 3.890 14 N -0.301 5.301 15 C 0.255 3.745 16 O -0.320 6.320 17 C -0.117 4.117 18 H 0.148 0.852 19 C -0.156 4.156 20 C -0.202 4.202 21 S -0.085 6.085 22 C -0.197 4.197 23 N -0.227 5.227 24 H 0.081 0.919 25 H 0.121 0.879 26 H 0.153 0.847 27 H 0.151 0.849 28 H 0.259 0.741 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.138 0.862 33 H 0.154 0.846 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.740 -2.267 1.038 12.981 hybrid contribution 1.867 -0.007 -0.406 1.911 sum -10.873 -2.274 0.632 11.126 Atomic orbital electron populations 1.70500 1.07173 1.27957 1.25247 1.26985 0.96040 1.03826 0.94382 0.85357 0.79148 0.76973 0.79135 1.19080 1.19778 1.18133 1.19894 0.94415 0.90531 1.44921 0.89801 1.18861 0.88040 0.93315 0.88637 1.21807 0.99173 0.93916 1.20396 1.21037 0.93678 0.97272 0.93941 1.20993 0.95145 0.95860 1.25062 1.19144 0.85266 0.91014 0.93553 1.43362 1.03496 1.10530 1.72695 1.21288 0.90475 0.84275 0.78483 1.91153 1.66570 1.32476 1.41809 1.22191 0.91025 0.97609 1.00868 0.85233 1.21771 0.96428 0.95050 1.02350 1.23949 0.99784 0.94072 1.02417 1.87763 1.17630 1.14132 1.88956 1.24297 0.92972 1.03941 0.98477 1.68654 1.07260 1.25423 1.21373 0.91874 0.87931 0.84650 0.84948 0.74146 0.91684 0.89279 0.88881 0.86170 0.84630 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -38.93 9.00 21.84 0.20 -38.74 16 2 C 0.01 0.71 5.50 85.29 0.47 1.18 16 3 Si 0.97 40.34 29.56 68.60 2.03 42.37 16 4 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 7 C -0.47 -26.47 9.14 23.47 0.21 -26.25 16 8 H 0.08 4.48 7.85 -2.92 -0.02 4.46 16 9 C 0.24 13.59 6.55 40.21 0.26 13.86 16 10 C -0.33 -16.59 9.83 22.86 0.22 -16.36 16 11 C -0.04 -1.51 10.15 22.39 0.23 -1.28 16 12 C -0.35 -14.36 9.95 22.72 0.23 -14.13 16 13 C 0.35 16.38 7.43 133.23 0.99 17.37 16 14 N -0.65 -23.50 5.28 -308.38 -1.63 -25.13 16 15 C 0.47 17.62 7.09 87.66 0.62 18.24 16 16 O -0.45 -22.18 11.16 -3.00 -0.03 -22.21 16 17 C -0.09 -2.36 2.89 -10.82 -0.03 -2.39 16 18 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 19 C -0.12 -2.96 5.61 30.82 0.17 -2.79 16 20 C -0.05 -1.11 7.38 72.22 0.53 -0.57 16 21 S -0.31 -6.96 23.23 -56.49 -1.31 -8.27 16 22 C -0.05 -1.08 6.77 72.72 0.49 -0.58 16 23 N -0.51 -28.61 5.74 -186.35 -1.07 -29.68 16 24 H 0.27 14.33 8.29 -92.70 -0.77 13.56 16 25 H 0.10 4.83 8.06 -2.91 -0.02 4.81 16 26 H 0.14 4.66 8.06 -2.91 -0.02 4.63 16 27 H 0.13 4.35 8.06 -2.91 -0.02 4.32 16 28 H 0.42 10.79 8.70 -92.71 -0.81 9.99 16 29 H 0.06 2.11 6.87 -2.39 -0.02 2.09 16 30 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.14 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.08 2.06 8.10 -2.38 -0.02 2.04 16 Total: -1.00 -71.51 298.26 2.90 -68.61 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: 0.32 Total: 26.79 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 4.40 Total: -13.73 kcal Atomic # 7 Polarization: -91.05 SS G_CDS: -2.50 Total: -93.55 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.03 Total: -22.21 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Atomic # 16 Polarization: -6.96 SS G_CDS: -1.31 Total: -8.27 kcal Total: -71.51 2.90 -68.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882474401.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.576 kcal (2) G-P(sol) polarization free energy of solvation -71.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds